RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 KRTAP9-6A8MVA2 160 aa3.92□□□□□ -1.78
VPS53-203ENST00000401468 A0A0A0MQY5 61 aa3.91□□□□□ -1.78
VPS53-203ENST00000401468 A6NED7 52 aa3.91□□□□□ -1.78
VPS53-203ENST00000401468 PRR15LQ9BU68 103 aa3.91□□□□□ -1.78
VPS53-203ENST00000401468 LCE1FQ5T754 118 aa3.9□□□□□ -1.79
VPS53-203ENST00000401468 LINC01554Q52M75 96 aa3.87□□□□□ -1.79
VPS53-203ENST00000401468 SPATA8Q6RVD6 105 aa3.86□□□□□ -1.79
VPS53-203ENST00000401468 PLAC4Q8WY50 150 aa3.86□□□□□ -1.79
VPS53-203ENST00000401468 MT1XP80297 61 aa3.85□□□□□ -1.79
VPS53-203ENST00000401468 KRTAP5-4Q6L8H1 288 aa3.83□□□□□ -1.8
VPS53-203ENST00000401468 KRTAP4-4Q9BYR3 166 aa3.83□□□□□ -1.8
VPS53-203ENST00000401468 UQCR11O14957 56 aa3.81□□□□□ -1.8
VPS53-203ENST00000401468 KRTAP12-1P59990 96 aa3.8□□□□□ -1.8
VPS53-203ENST00000401468 PRO2289Q9P1D8 64 aa3.8□□□□□ -1.8
VPS53-203ENST00000401468 A0A0D9SG42 100 aa3.78□□□□□ -1.8
VPS53-203ENST00000401468 A8MU10 97 aa3.77□□□□□ -1.81
VPS53-203ENST00000401468 SPRR2FQ96RM1 72 aa3.77□□□□□ -1.81
VPS53-203ENST00000401468 KRTAP12-2P59991 146 aa3.76□□□□□ -1.81
VPS53-203ENST00000401468 SPRR2EP22531 72 aa3.75□□□□□ -1.81
VPS53-203ENST00000401468 SPRR2BP35325 72 aa3.75□□□□□ -1.81
VPS53-203ENST00000401468 SPRR2AP35326 72 aa3.75□□□□□ -1.81
VPS53-203ENST00000401468 MIR22HGQ0VDD5 57 aa3.72□□□□□ -1.81
VPS53-203ENST00000401468 LCE3CQ5T5A8 94 aa3.72□□□□□ -1.81
VPS53-203ENST00000401468 SPINT4Q6UDR6 99 aa3.7□□□□□ -1.82
VPS53-203ENST00000401468 CAMK2N1Q7Z7J9 78 aa3.7□□□□□ -1.82
VPS53-203ENST00000401468 KRTAP8-1Q8IUC2 63 aa3.7□□□□□ -1.82
VPS53-203ENST00000401468 SPRR2DP22532 72 aa3.64□□□□□ -1.83
VPS53-203ENST00000401468 DSTQ03001 7570 aaKnown RBP3.63□□□□□ -1.83
VPS53-203ENST00000401468 C10orf95Q9H7T3 257 aa3.61□□□□□ -1.83
VPS53-203ENST00000401468 K7ERS5 55 aa3.58□□□□□ -1.84
VPS53-203ENST00000401468 AHNAK2Q8IVF2 5795 aa3.56□□□□□ -1.84
VPS53-203ENST00000401468 KRTAP5-10Q6L8G5 202 aa3.53□□□□□ -1.84
VPS53-203ENST00000401468 KRTAP25-1Q3LHN0 102 aa3.52□□□□□ -1.85
VPS53-203ENST00000401468 TNP1P09430 55 aa3.51□□□□□ -1.85
VPS53-203ENST00000401468 PRAC1Q96KF2 57 aa3.51□□□□□ -1.85
VPS53-203ENST00000401468 OBSCNQ5VST9 7968 aa3.5□□□□□ -1.85
VPS53-203ENST00000401468 ROMO1P60602 79 aa3.5□□□□□ -1.85
VPS53-203ENST00000401468 KRTAP5-7Q6L8G8 165 aa3.48□□□□□ -1.85
VPS53-203ENST00000401468 HMCN1Q96RW7 5635 aa3.46□□□□□ -1.86
VPS53-203ENST00000401468 NDUFAF8A1L188 74 aa3.44□□□□□ -1.86
VPS53-203ENST00000401468 KRTAP19-7Q3SYF9 63 aa3.44□□□□□ -1.86
VPS53-203ENST00000401468 KRTAP4-3Q9BYR4 195 aa3.43□□□□□ -1.86
VPS53-203ENST00000401468 LCE3AQ5TA76 89 aa3.42□□□□□ -1.86
VPS53-203ENST00000401468 SPRR5A0A1B0GTR4 108 aa3.39□□□□□ -1.87
VPS53-203ENST00000401468 MT1EP04732 61 aa3.39□□□□□ -1.87
VPS53-203ENST00000401468 LCE3EQ5T5B0 92 aa3.39□□□□□ -1.87
VPS53-203ENST00000401468 KRTAP19-5Q3LI72 72 aa3.38□□□□□ -1.87
VPS53-203ENST00000401468 KRTAP19-3Q7Z4W3 81 aa3.31□□□□□ -1.88
VPS53-203ENST00000401468 KRTAP12-3P60328 96 aa3.3□□□□□ -1.88
VPS53-203ENST00000401468 PP632Q6XCG6 107 aa3.29□□□□□ -1.88
VPS53-203ENST00000401468 MT1LQ93083 61 aa3.28□□□□□ -1.88
VPS53-203ENST00000401468 MT1GP13640 62 aa3.25□□□□□ -1.89
VPS53-203ENST00000401468 MT4P47944 62 aa3.24□□□□□ -1.89
VPS53-203ENST00000401468 MT1MQ8N339 61 aa3.2□□□□□ -1.9
VPS53-203ENST00000401468 AHNAKQ09666 5890 aaKnown RBP3.16□□□□□ -1.9
VPS53-203ENST00000401468 KRTAP5-2Q701N4 177 aa3.16□□□□□ -1.9
VPS53-203ENST00000401468 MUC5ACP98088 5654 aa3.08□□□□□ -1.92
VPS53-203ENST00000401468 LUZP6Q538Z0 58 aa3.07□□□□□ -1.92
VPS53-203ENST00000401468 KRTAP5-5Q701N2 237 aaPredicted RBP3.06□□□□□ -1.92
VPS53-203ENST00000401468 MUC5BQ9HC84 5762 aaPredicted RBP3.03□□□□□ -1.92
VPS53-203ENST00000401468 LCE1CQ5T751 118 aa2.92□□□□□ -1.94
VPS53-203ENST00000401468 LCE1BQ5T7P3 118 aa2.92□□□□□ -1.94
VPS53-203ENST00000401468 KRTAP20-2Q3LI61 65 aa2.91□□□□□ -1.94
VPS53-203ENST00000401468 INE1O15225 51 aa2.83□□□□□ -1.96
VPS53-203ENST00000401468 KRTAP12-4P60329 112 aa2.81□□□□□ -1.96
VPS53-203ENST00000401468 KRTAP5-8O75690 187 aa2.8□□□□□ -1.96
VPS53-203ENST00000401468 SYNE1Q8NF91 8797 aaKnown RBP2.8□□□□□ -1.96
VPS53-203ENST00000401468 MT1AP04731 61 aa2.79□□□□□ -1.96
VPS53-203ENST00000401468 KRTAP6-1Q3LI64 71 aa2.75□□□□□ -1.97
VPS53-203ENST00000401468 LCE3DQ9BYE3 92 aa2.67□□□□□ -1.98
VPS53-203ENST00000401468 KRTAP6-2Q3LI66 62 aa2.63□□□□□ -1.99
VPS53-203ENST00000401468 MUC19Q7Z5P9 8384 aa2.43□□□□□ -2.02
VPS53-203ENST00000401468 KRTAP21-2Q3LI59 83 aa2.1□□□□□ -2.07
VPS53-203ENST00000401468 PHGR1C9JFL3 82 aa2.06□□□□□ -2.08
VPS53-203ENST00000401468 PRM1P04553 51 aa1.75□□□□□ -2.13
VPS53-203ENST00000401468 KRTAP21-1Q3LI58 79 aa1.57□□□□□ -2.16
VPS53-203ENST00000401468 MUC16Q8WXI7 14507 aa1.1□□□□□ -2.23
Retrieved 77 of 20,778 RNA–protein pairs in 9.9 ms