RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.84□□□□□ -1.47
SKA1-202ENST00000398452 ROMO1P60602 79 aa5.82□□□□□ -1.48
SKA1-202ENST00000398452 TNP1P09430 55 aa5.79□□□□□ -1.48
SKA1-202ENST00000398452 C10orf95Q9H7T3 257 aa5.79□□□□□ -1.48
SKA1-202ENST00000398452 KRTAP2-2Q9BYT5 123 aa5.78□□□□□ -1.48
SKA1-202ENST00000398452 KRTAP5-11Q6L8G4 156 aa5.75□□□□□ -1.49
SKA1-202ENST00000398452 NEBP20929 6669 aa5.74□□□□□ -1.49
SKA1-202ENST00000398452 KRTAP25-1Q3LHN0 102 aa5.72□□□□□ -1.49
SKA1-202ENST00000398452 PRAC1Q96KF2 57 aa5.69□□□□□ -1.5
SKA1-202ENST00000398452 MUC12Q9UKN1 5478 aa5.62□□□□□ -1.51
SKA1-202ENST00000398452 KRTAP10-12P60413 245 aa5.61□□□□□ -1.51
SKA1-202ENST00000398452 KRTAP20-1Q3LI63 56 aa5.6□□□□□ -1.51
SKA1-202ENST00000398452 LUZP6Q538Z0 58 aa5.58□□□□□ -1.52
SKA1-202ENST00000398452 LCE1EQ5T753 118 aa5.58□□□□□ -1.52
SKA1-202ENST00000398452 KRTAP5-9P26371 169 aa5.55□□□□□ -1.52
SKA1-202ENST00000398452 PP632Q6XCG6 107 aa5.51□□□□□ -1.53
SKA1-202ENST00000398452 KMT2DO14686 5537 aa5.5□□□□□ -1.53
SKA1-202ENST00000398452 LCE3AQ5TA76 89 aa5.47□□□□□ -1.53
SKA1-202ENST00000398452 KRTAP8-1Q8IUC2 63 aa5.47□□□□□ -1.53
SKA1-202ENST00000398452 SPRR2FQ96RM1 72 aa5.46□□□□□ -1.54
SKA1-202ENST00000398452 MDN1Q9NU22 5596 aa5.43□□□□□ -1.54
SKA1-202ENST00000398452 SPRR2EP22531 72 aa5.42□□□□□ -1.54
SKA1-202ENST00000398452 SPRR2BP35325 72 aa5.42□□□□□ -1.54
SKA1-202ENST00000398452 SPRR2AP35326 72 aa5.42□□□□□ -1.54
SKA1-202ENST00000398452 KRTAP2-3P0C7H8 128 aa5.39□□□□□ -1.55
SKA1-202ENST00000398452 KRTAP2-4Q9BYR9 128 aa5.39□□□□□ -1.55
SKA1-202ENST00000398452 MT3P25713 68 aa5.35□□□□□ -1.55
SKA1-202ENST00000398452 KRTAP19-5Q3LI72 72 aa5.3□□□□□ -1.56
SKA1-202ENST00000398452 KRTAP12-3P60328 96 aa5.29□□□□□ -1.56
SKA1-202ENST00000398452 NDUFAF8A1L188 74 aa5.25□□□□□ -1.57
SKA1-202ENST00000398452 SPRR2DP22532 72 aa5.23□□□□□ -1.57
SKA1-202ENST00000398452 KRTAP19-7Q3SYF9 63 aa5.22□□□□□ -1.57
SKA1-202ENST00000398452 KRTAP2-1Q9BYU5 128 aa5.21□□□□□ -1.58
SKA1-202ENST00000398452 MT1EP04732 61 aa5.19□□□□□ -1.58
SKA1-202ENST00000398452 KRTAP19-3Q7Z4W3 81 aa5.05□□□□□ -1.6
SKA1-202ENST00000398452 MT1LQ93083 61 aa5.05□□□□□ -1.6
SKA1-202ENST00000398452 KRTAP5-1Q6L8H4 278 aa5.03□□□□□ -1.6
SKA1-202ENST00000398452 MT1GP13640 62 aa5.02□□□□□ -1.61
SKA1-202ENST00000398452 LCE3CQ5T5A8 94 aa4.91□□□□□ -1.62
SKA1-202ENST00000398452 MT1MQ8N339 61 aa4.9□□□□□ -1.63
SKA1-202ENST00000398452 KRTAP9-6A8MVA2 160 aa4.87□□□□□ -1.63
SKA1-202ENST00000398452 KRTAP5-4Q6L8H1 288 aa4.87□□□□□ -1.63
SKA1-202ENST00000398452 KRTAP4-4Q9BYR3 166 aa4.81□□□□□ -1.64
SKA1-202ENST00000398452 DSTQ03001 7570 aaKnown RBP4.8□□□□□ -1.64
SKA1-202ENST00000398452 KRTAP4-3Q9BYR4 195 aa4.74□□□□□ -1.65
SKA1-202ENST00000398452 GPR98Q8WXG9 6306 aa4.73□□□□□ -1.65
SKA1-202ENST00000398452 INE1O15225 51 aa4.67□□□□□ -1.66
SKA1-202ENST00000398452 LCE1FQ5T754 118 aa4.66□□□□□ -1.66
SKA1-202ENST00000398452 SPRR5A0A1B0GTR4 108 aa4.64□□□□□ -1.67
SKA1-202ENST00000398452 MT4P47944 62 aa4.63□□□□□ -1.67
SKA1-202ENST00000398452 HMCN1Q96RW7 5635 aa4.48□□□□□ -1.69
SKA1-202ENST00000398452 OBSCNQ5VST9 7968 aa4.39□□□□□ -1.71
SKA1-202ENST00000398452 AHNAK2Q8IVF2 5795 aa4.39□□□□□ -1.71
SKA1-202ENST00000398452 KRTAP5-5Q701N2 237 aaPredicted RBP4.38□□□□□ -1.71
SKA1-202ENST00000398452 MT1AP04731 61 aa4.33□□□□□ -1.72
SKA1-202ENST00000398452 KRTAP5-10Q6L8G5 202 aa4.33□□□□□ -1.72
SKA1-202ENST00000398452 KRTAP12-4P60329 112 aa4.27□□□□□ -1.73
SKA1-202ENST00000398452 KRTAP6-1Q3LI64 71 aa4.24□□□□□ -1.73
SKA1-202ENST00000398452 KRTAP20-2Q3LI61 65 aa4.22□□□□□ -1.73
SKA1-202ENST00000398452 SYNE1Q8NF91 8797 aaKnown RBP4.18□□□□□ -1.74
SKA1-202ENST00000398452 KRTAP5-7Q6L8G8 165 aa4.17□□□□□ -1.74
SKA1-202ENST00000398452 KRTAP5-2Q701N4 177 aa4.03□□□□□ -1.76
SKA1-202ENST00000398452 LCE3EQ5T5B0 92 aa4□□□□□ -1.77
SKA1-202ENST00000398452 KRTAP6-2Q3LI66 62 aa3.96□□□□□ -1.78
SKA1-202ENST00000398452 KRTAP5-8O75690 187 aa3.75□□□□□ -1.81
SKA1-202ENST00000398452 LCE3DQ9BYE3 92 aa3.69□□□□□ -1.82
SKA1-202ENST00000398452 LCE1CQ5T751 118 aa3.64□□□□□ -1.83
SKA1-202ENST00000398452 LCE1BQ5T7P3 118 aa3.64□□□□□ -1.83
SKA1-202ENST00000398452 AHNAKQ09666 5890 aaKnown RBP3.62□□□□□ -1.83
SKA1-202ENST00000398452 MUC5BQ9HC84 5762 aaPredicted RBP3.61□□□□□ -1.83
SKA1-202ENST00000398452 MUC5ACP98088 5654 aa3.6□□□□□ -1.83
SKA1-202ENST00000398452 MUC19Q7Z5P9 8384 aa3.04□□□□□ -1.92
SKA1-202ENST00000398452 PRM1P04553 51 aa2.99□□□□□ -1.93
SKA1-202ENST00000398452 KRTAP21-2Q3LI59 83 aa2.76□□□□□ -1.97
SKA1-202ENST00000398452 PHGR1C9JFL3 82 aa2.58□□□□□ -2
SKA1-202ENST00000398452 KRTAP21-1Q3LI58 79 aa1.92□□□□□ -2.1
SKA1-202ENST00000398452 MUC16Q8WXI7 14507 aa1.62□□□□□ -2.15
Retrieved 77 of 20,778 RNA–protein pairs in 6 ms