RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 LCE5AQ5TCM9 118 aa6.18□□□□□ -1.42
CUX2-202ENST00000397643 PMAIP1Q13794 54 aa6.12□□□□□ -1.43
CUX2-202ENST00000397643 LCE1DQ5T752 114 aa6.12□□□□□ -1.43
CUX2-202ENST00000397643 CDC42SE1Q9NRR8 79 aa6.11□□□□□ -1.43
CUX2-202ENST00000397643 KRTAP19-7Q3SYF9 63 aa6.09□□□□□ -1.43
CUX2-202ENST00000397643 HMCN1Q96RW7 5635 aa6.08□□□□□ -1.44
CUX2-202ENST00000397643 KRTAP19-3Q7Z4W3 81 aa6.07□□□□□ -1.44
CUX2-202ENST00000397643 MT1EP04732 61 aa6.04□□□□□ -1.44
CUX2-202ENST00000397643 AHNAK2Q8IVF2 5795 aa6.02□□□□□ -1.45
CUX2-202ENST00000397643 KTN1-AS1Q86SY8 53 aa6□□□□□ -1.45
CUX2-202ENST00000397643 C10orf95Q9H7T3 257 aa6□□□□□ -1.45
CUX2-202ENST00000397643 MT4P47944 62 aa5.97□□□□□ -1.45
CUX2-202ENST00000397643 LCE4AQ5TA78 99 aa5.95□□□□□ -1.46
CUX2-202ENST00000397643 TNP1P09430 55 aa5.94□□□□□ -1.46
CUX2-202ENST00000397643 KRTAP5-10Q6L8G5 202 aa5.94□□□□□ -1.46
CUX2-202ENST00000397643 MT1GP13640 62 aa5.85□□□□□ -1.47
CUX2-202ENST00000397643 KRTAP25-1Q3LHN0 102 aa5.83□□□□□ -1.48
CUX2-202ENST00000397643 ROMO1P60602 79 aa5.81□□□□□ -1.48
CUX2-202ENST00000397643 KRTAP5-4Q6L8H1 288 aa5.81□□□□□ -1.48
CUX2-202ENST00000397643 MT1MQ8N339 61 aa5.78□□□□□ -1.48
CUX2-202ENST00000397643 KRTAP4-6Q9BYQ5 205 aa5.78□□□□□ -1.48
CUX2-202ENST00000397643 KRTAP19-5Q3LI72 72 aa5.77□□□□□ -1.49
CUX2-202ENST00000397643 KRTAP5-7Q6L8G8 165 aa5.76□□□□□ -1.49
CUX2-202ENST00000397643 PP632Q6XCG6 107 aa5.76□□□□□ -1.49
CUX2-202ENST00000397643 LCE3AQ5TA76 89 aa5.72□□□□□ -1.49
CUX2-202ENST00000397643 MT1LQ93083 61 aa5.69□□□□□ -1.5
CUX2-202ENST00000397643 KRTAP5-3Q6L8H2 238 aa5.68□□□□□ -1.5
CUX2-202ENST00000397643 KRTAP4-3Q9BYR4 195 aa5.68□□□□□ -1.5
CUX2-202ENST00000397643 KRTAP23-1A1A580 65 aa5.63□□□□□ -1.51
CUX2-202ENST00000397643 KRTAP12-3P60328 96 aa5.52□□□□□ -1.53
CUX2-202ENST00000397643 KRTAP20-2Q3LI61 65 aa5.5□□□□□ -1.53
CUX2-202ENST00000397643 PRAC1Q96KF2 57 aa5.49□□□□□ -1.53
CUX2-202ENST00000397643 SPRR5A0A1B0GTR4 108 aa5.45□□□□□ -1.54
CUX2-202ENST00000397643 KRTAP4-7Q9BYR0 210 aa5.4□□□□□ -1.54
CUX2-202ENST00000397643 KRTAP5-5Q701N2 237 aaPredicted RBP5.38□□□□□ -1.55
CUX2-202ENST00000397643 KRTAP15-1Q3LI76 137 aa5.31□□□□□ -1.56
CUX2-202ENST00000397643 SYNE1Q8NF91 8797 aaKnown RBP5.31□□□□□ -1.56
CUX2-202ENST00000397643 KRTAP12-4P60329 112 aa5.27□□□□□ -1.57
CUX2-202ENST00000397643 KRTAP19-4Q3LI73 84 aa5.26□□□□□ -1.57
CUX2-202ENST00000397643 H3BS24 57 aa5.21□□□□□ -1.58
CUX2-202ENST00000397643 LOC100996750A0A140TA64 210 aa5.14□□□□□ -1.59
CUX2-202ENST00000397643 KRTAP4-11Q9BYQ6 195 aa5.13□□□□□ -1.59
CUX2-202ENST00000397643 LCE3CQ5T5A8 94 aa5.12□□□□□ -1.59
CUX2-202ENST00000397643 AHNAKQ09666 5890 aaKnown RBP5.08□□□□□ -1.6
CUX2-202ENST00000397643 MUC5ACP98088 5654 aa5.05□□□□□ -1.6
CUX2-202ENST00000397643 MUC5BQ9HC84 5762 aaPredicted RBP5.03□□□□□ -1.6
CUX2-202ENST00000397643 KRTAP5-2Q701N4 177 aa5.02□□□□□ -1.61
CUX2-202ENST00000397643 KRTAP5-8O75690 187 aa4.99□□□□□ -1.61
CUX2-202ENST00000397643 OBSCNQ5VST9 7968 aa4.85□□□□□ -1.63
CUX2-202ENST00000397643 KRTAP6-1Q3LI64 71 aa4.84□□□□□ -1.63
CUX2-202ENST00000397643 MT1AP04731 61 aa4.82□□□□□ -1.64
CUX2-202ENST00000397643 KRTAP9-6A8MVA2 160 aa4.78□□□□□ -1.64
CUX2-202ENST00000397643 KRTAP9-9Q9BYP9 154 aa4.75□□□□□ -1.65
CUX2-202ENST00000397643 KRTAP6-2Q3LI66 62 aa4.7□□□□□ -1.66
CUX2-202ENST00000397643 KRTAP9-4Q9BYQ2 154 aa4.7□□□□□ -1.66
CUX2-202ENST00000397643 NDUFAF8A1L188 74 aa4.69□□□□□ -1.66
CUX2-202ENST00000397643 A0A0A0MQY5 61 aa4.63□□□□□ -1.67
CUX2-202ENST00000397643 KRTAP5-1Q6L8H4 278 aa4.59□□□□□ -1.67
CUX2-202ENST00000397643 LUZP6Q538Z0 58 aa4.54□□□□□ -1.68
CUX2-202ENST00000397643 MT3P25713 68 aa4.4□□□□□ -1.71
CUX2-202ENST00000397643 LCE1EQ5T753 118 aa4.17□□□□□ -1.74
CUX2-202ENST00000397643 INE1O15225 51 aa4.04□□□□□ -1.76
CUX2-202ENST00000397643 KRTAP4-2Q9BYR5 136 aa4.04□□□□□ -1.76
CUX2-202ENST00000397643 LCE1BQ5T7P3 118 aa3.95□□□□□ -1.78
CUX2-202ENST00000397643 LCE1CQ5T751 118 aa3.88□□□□□ -1.79
CUX2-202ENST00000397643 LCE3DQ9BYE3 92 aa3.8□□□□□ -1.8
CUX2-202ENST00000397643 KRTAP4-12Q9BQ66 201 aa3.79□□□□□ -1.8
CUX2-202ENST00000397643 LCE3EQ5T5B0 92 aa3.65□□□□□ -1.83
CUX2-202ENST00000397643 KRTAP5-11Q6L8G4 156 aa3.64□□□□□ -1.83
CUX2-202ENST00000397643 LCE1FQ5T754 118 aa3.56□□□□□ -1.84
CUX2-202ENST00000397643 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.5□□□□□ -1.85
CUX2-202ENST00000397643 PHGR1C9JFL3 82 aa3.45□□□□□ -1.86
CUX2-202ENST00000397643 KRTAP21-2Q3LI59 83 aa3.21□□□□□ -1.9
CUX2-202ENST00000397643 MUC19Q7Z5P9 8384 aa3.04□□□□□ -1.92
CUX2-202ENST00000397643 PRM1P04553 51 aa2.99□□□□□ -1.93
CUX2-202ENST00000397643 KRTAP4-4Q9BYR3 166 aa2.99□□□□□ -1.93
CUX2-202ENST00000397643 KRTAP21-1Q3LI58 79 aa2.62□□□□□ -1.99
CUX2-202ENST00000397643 MUC16Q8WXI7 14507 aa2.07□□□□□ -2.08
Retrieved 78 of 20,778 RNA–protein pairs in 6.1 ms