RNA–Protein interactions for RNA: ENST00000395761.3

CXCL1-201, Transcript of C-X-C motif chemokine ligand 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CXCL1, Length 1,097 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1-201ENST00000395761 SPRR2BP35325 72 aa6.36□□□□□ -1.39
CXCL1-201ENST00000395761 SPRR2AP35326 72 aa6.36□□□□□ -1.39
CXCL1-201ENST00000395761 TNP1P09430 55 aa6.33□□□□□ -1.4
CXCL1-201ENST00000395761 LCE1AQ5T7P2 110 aa6.32□□□□□ -1.4
CXCL1-201ENST00000395761 LCE5AQ5TCM9 118 aa6.29□□□□□ -1.4
CXCL1-201ENST00000395761 ROMO1P60602 79 aa6.26□□□□□ -1.41
CXCL1-201ENST00000395761 KRTAP25-1Q3LHN0 102 aa6.26□□□□□ -1.41
CXCL1-201ENST00000395761 KRTAP20-1Q3LI63 56 aa6.23□□□□□ -1.41
CXCL1-201ENST00000395761 KRTAP19-7Q3SYF9 63 aa6.21□□□□□ -1.42
CXCL1-201ENST00000395761 PRO0628Q9UI54 55 aa6.15□□□□□ -1.42
CXCL1-201ENST00000395761 MT1EP04732 61 aa6.14□□□□□ -1.43
CXCL1-201ENST00000395761 SPRR2DP22532 72 aa6.14□□□□□ -1.43
CXCL1-201ENST00000395761 KRTAP2-3P0C7H8 128 aa6.13□□□□□ -1.43
CXCL1-201ENST00000395761 KRTAP19-5Q3LI72 72 aa6.13□□□□□ -1.43
CXCL1-201ENST00000395761 KRTAP2-4Q9BYR9 128 aa6.13□□□□□ -1.43
CXCL1-201ENST00000395761 KRTAP23-1A1A580 65 aa6.11□□□□□ -1.43
CXCL1-201ENST00000395761 LCE3AQ5TA76 89 aa6.11□□□□□ -1.43
CXCL1-201ENST00000395761 PMAIP1Q13794 54 aa6.1□□□□□ -1.43
CXCL1-201ENST00000395761 KRTAP5-3Q6L8H2 238 aa6.05□□□□□ -1.44
CXCL1-201ENST00000395761 KRTAP19-3Q7Z4W3 81 aa6.02□□□□□ -1.45
CXCL1-201ENST00000395761 PP632Q6XCG6 107 aa5.97□□□□□ -1.45
CXCL1-201ENST00000395761 KRTAP2-2Q9BYT5 123 aa5.95□□□□□ -1.46
CXCL1-201ENST00000395761 KRTAP2-1Q9BYU5 128 aa5.95□□□□□ -1.46
CXCL1-201ENST00000395761 MT1LQ93083 61 aa5.92□□□□□ -1.46
CXCL1-201ENST00000395761 MT1GP13640 62 aa5.91□□□□□ -1.46
CXCL1-201ENST00000395761 KRTAP12-3P60328 96 aa5.89□□□□□ -1.47
CXCL1-201ENST00000395761 MT1MQ8N339 61 aa5.83□□□□□ -1.48
CXCL1-201ENST00000395761 DSTQ03001 7570 aaKnown RBP5.74□□□□□ -1.49
CXCL1-201ENST00000395761 KTN1-AS1Q86SY8 53 aa5.73□□□□□ -1.49
CXCL1-201ENST00000395761 KRTAP4-3Q9BYR4 195 aa5.73□□□□□ -1.49
CXCL1-201ENST00000395761 KRTAP15-1Q3LI76 137 aa5.71□□□□□ -1.5
CXCL1-201ENST00000395761 PRAC1Q96KF2 57 aa5.71□□□□□ -1.5
CXCL1-201ENST00000395761 LCE3CQ5T5A8 94 aa5.49□□□□□ -1.53
CXCL1-201ENST00000395761 KRTAP5-4Q6L8H1 288 aa5.4□□□□□ -1.54
CXCL1-201ENST00000395761 MT4P47944 62 aa5.37□□□□□ -1.55
CXCL1-201ENST00000395761 SVIPQ8NHG7 77 aa5.35□□□□□ -1.55
CXCL1-201ENST00000395761 KRTAP5-5Q701N2 237 aaPredicted RBP5.31□□□□□ -1.56
CXCL1-201ENST00000395761 HMCN1Q96RW7 5635 aa5.29□□□□□ -1.56
CXCL1-201ENST00000395761 KRTAP9-6A8MVA2 160 aa5.16□□□□□ -1.58
CXCL1-201ENST00000395761 SPRR5A0A1B0GTR4 108 aa5.15□□□□□ -1.59
CXCL1-201ENST00000395761 SYNE1Q8NF91 8797 aaKnown RBP5.12□□□□□ -1.59
CXCL1-201ENST00000395761 GPR98Q8WXG9 6306 aa5.11□□□□□ -1.59
CXCL1-201ENST00000395761 KRTAP12-4P60329 112 aa5.08□□□□□ -1.6
CXCL1-201ENST00000395761 KRTAP20-2Q3LI61 65 aa5.08□□□□□ -1.6
CXCL1-201ENST00000395761 MT1AP04731 61 aa5.03□□□□□ -1.6
CXCL1-201ENST00000395761 AHNAK2Q8IVF2 5795 aa5.01□□□□□ -1.61
CXCL1-201ENST00000395761 KRTAP6-1Q3LI64 71 aa5□□□□□ -1.61
CXCL1-201ENST00000395761 KRTAP5-10Q6L8G5 202 aa4.87□□□□□ -1.63
CXCL1-201ENST00000395761 KRTAP5-2Q701N4 177 aa4.78□□□□□ -1.64
CXCL1-201ENST00000395761 LUZP6Q538Z0 58 aa4.75□□□□□ -1.65
CXCL1-201ENST00000395761 KRTAP6-2Q3LI66 62 aa4.73□□□□□ -1.65
CXCL1-201ENST00000395761 KRTAP5-7Q6L8G8 165 aa4.63□□□□□ -1.67
CXCL1-201ENST00000395761 MT3P25713 68 aa4.57□□□□□ -1.68
CXCL1-201ENST00000395761 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.48□□□□□ -1.69
CXCL1-201ENST00000395761 KRTAP5-8O75690 187 aa4.43□□□□□ -1.7
CXCL1-201ENST00000395761 KRTAP5-11Q6L8G4 156 aa4.37□□□□□ -1.71
CXCL1-201ENST00000395761 OBSCNQ5VST9 7968 aa4.35□□□□□ -1.71
CXCL1-201ENST00000395761 NDUFAF8A1L188 74 aa4.34□□□□□ -1.71
CXCL1-201ENST00000395761 KRTAP5-1Q6L8H4 278 aa4.24□□□□□ -1.73
CXCL1-201ENST00000395761 MUC5ACP98088 5654 aa4.16□□□□□ -1.74
CXCL1-201ENST00000395761 LCE1EQ5T753 118 aa4.13□□□□□ -1.75
CXCL1-201ENST00000395761 MUC5BQ9HC84 5762 aaPredicted RBP4.09□□□□□ -1.76
CXCL1-201ENST00000395761 AHNAKQ09666 5890 aaKnown RBP4.07□□□□□ -1.76
CXCL1-201ENST00000395761 LCE3DQ9BYE3 92 aa4.06□□□□□ -1.76
CXCL1-201ENST00000395761 LCE3EQ5T5B0 92 aa3.92□□□□□ -1.78
CXCL1-201ENST00000395761 LCE1BQ5T7P3 118 aa3.91□□□□□ -1.78
CXCL1-201ENST00000395761 A0A0A0MQY5 61 aa3.87□□□□□ -1.79
CXCL1-201ENST00000395761 LCE1CQ5T751 118 aa3.84□□□□□ -1.79
CXCL1-201ENST00000395761 LCE1FQ5T754 118 aa3.76□□□□□ -1.81
CXCL1-201ENST00000395761 KRTAP4-4Q9BYR3 166 aa3.75□□□□□ -1.81
CXCL1-201ENST00000395761 INE1O15225 51 aa3.63□□□□□ -1.83
CXCL1-201ENST00000395761 KRTAP21-2Q3LI59 83 aa3.3□□□□□ -1.88
CXCL1-201ENST00000395761 PRM1P04553 51 aa3.21□□□□□ -1.9
CXCL1-201ENST00000395761 PHGR1C9JFL3 82 aa2.98□□□□□ -1.93
CXCL1-201ENST00000395761 MUC19Q7Z5P9 8384 aa2.68□□□□□ -1.98
CXCL1-201ENST00000395761 KRTAP21-1Q3LI58 79 aa2.11□□□□□ -2.07
CXCL1-201ENST00000395761 MUC16Q8WXI7 14507 aa1.95□□□□□ -2.1
Retrieved 77 of 20,778 RNA–protein pairs in 80.7 ms