RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 LCE3BQ5TA77 95 aa7.88□□□□□ -1.15
CLN3-207ENST00000395653 KRTAP25-1Q3LHN0 102 aa7.82□□□□□ -1.16
CLN3-207ENST00000395653 MT1GP13640 62 aa7.8□□□□□ -1.16
CLN3-207ENST00000395653 MT1LQ93083 61 aa7.76□□□□□ -1.17
CLN3-207ENST00000395653 PP632Q6XCG6 107 aa7.73□□□□□ -1.17
CLN3-207ENST00000395653 KRTAP12-3P60328 96 aa7.69□□□□□ -1.18
CLN3-207ENST00000395653 MT1MQ8N339 61 aa7.65□□□□□ -1.18
CLN3-207ENST00000395653 CDC42SE1Q9NRR8 79 aa7.65□□□□□ -1.18
CLN3-207ENST00000395653 DSTQ03001 7570 aaKnown RBP7.65□□□□□ -1.18
CLN3-207ENST00000395653 KRTAP23-1A1A580 65 aa7.56□□□□□ -1.2
CLN3-207ENST00000395653 ROMO1P60602 79 aa7.52□□□□□ -1.21
CLN3-207ENST00000395653 KRTAP4-3Q9BYR4 195 aa7.44□□□□□ -1.22
CLN3-207ENST00000395653 KRTAP4-7Q9BYR0 210 aa7.36□□□□□ -1.23
CLN3-207ENST00000395653 KRTAP19-4Q3LI73 84 aa7.32□□□□□ -1.24
CLN3-207ENST00000395653 KRTAP15-1Q3LI76 137 aa7.27□□□□□ -1.24
CLN3-207ENST00000395653 KRTAP4-9Q9BYQ8 210 aa7.23□□□□□ -1.25
CLN3-207ENST00000395653 LCE4AQ5TA78 99 aa7.22□□□□□ -1.25
CLN3-207ENST00000395653 KRTAP5-4Q6L8H1 288 aa7.15□□□□□ -1.27
CLN3-207ENST00000395653 BRK1Q8WUW1 75 aa7.12□□□□□ -1.27
CLN3-207ENST00000395653 LCE1DQ5T752 114 aa7.11□□□□□ -1.27
CLN3-207ENST00000395653 LCE3CQ5T5A8 94 aa7.1□□□□□ -1.27
CLN3-207ENST00000395653 MT4P47944 62 aa7.06□□□□□ -1.28
CLN3-207ENST00000395653 KRTAP5-5Q701N2 237 aaPredicted RBP7.01□□□□□ -1.29
CLN3-207ENST00000395653 HMCN1Q96RW7 5635 aa7□□□□□ -1.29
CLN3-207ENST00000395653 LOC100996750A0A140TA64 210 aa6.95□□□□□ -1.3
CLN3-207ENST00000395653 KRTAP4-6Q9BYQ5 205 aa6.9□□□□□ -1.31
CLN3-207ENST00000395653 KRTAP12-4P60329 112 aa6.75□□□□□ -1.33
CLN3-207ENST00000395653 SPRR5A0A1B0GTR4 108 aa6.74□□□□□ -1.33
CLN3-207ENST00000395653 SYNE1Q8NF91 8797 aaKnown RBP6.72□□□□□ -1.33
CLN3-207ENST00000395653 PMAIP1Q13794 54 aa6.71□□□□□ -1.34
CLN3-207ENST00000395653 KRTAP20-2Q3LI61 65 aa6.71□□□□□ -1.34
CLN3-207ENST00000395653 GPR98Q8WXG9 6306 aa6.7□□□□□ -1.34
CLN3-207ENST00000395653 KRTAP9-6A8MVA2 160 aa6.68□□□□□ -1.34
CLN3-207ENST00000395653 MT1AP04731 61 aa6.61□□□□□ -1.35
CLN3-207ENST00000395653 AHNAK2Q8IVF2 5795 aa6.58□□□□□ -1.36
CLN3-207ENST00000395653 KRTAP6-1Q3LI64 71 aa6.53□□□□□ -1.36
CLN3-207ENST00000395653 SVIPQ8NHG7 77 aa6.53□□□□□ -1.36
CLN3-207ENST00000395653 KRTAP5-3Q6L8H2 238 aa6.5□□□□□ -1.37
CLN3-207ENST00000395653 KRTAP5-10Q6L8G5 202 aa6.47□□□□□ -1.37
CLN3-207ENST00000395653 PRO0628Q9UI54 55 aa6.44□□□□□ -1.38
CLN3-207ENST00000395653 PRAC1Q96KF2 57 aa6.38□□□□□ -1.39
CLN3-207ENST00000395653 KRTAP9-4Q9BYQ2 154 aa6.35□□□□□ -1.39
CLN3-207ENST00000395653 KRTAP5-2Q701N4 177 aa6.32□□□□□ -1.4
CLN3-207ENST00000395653 KRTAP6-2Q3LI66 62 aa6.18□□□□□ -1.42
CLN3-207ENST00000395653 KRTAP5-7Q6L8G8 165 aa6.18□□□□□ -1.42
CLN3-207ENST00000395653 KTN1-AS1Q86SY8 53 aa6.11□□□□□ -1.43
CLN3-207ENST00000395653 KRTAP4-11Q9BYQ6 195 aa6.05□□□□□ -1.44
CLN3-207ENST00000395653 MT3P25713 68 aa6.04□□□□□ -1.44
CLN3-207ENST00000395653 OBSCNQ5VST9 7968 aa5.86□□□□□ -1.47
CLN3-207ENST00000395653 KRTAP5-8O75690 187 aa5.84□□□□□ -1.47
CLN3-207ENST00000395653 KRTAP5-1Q6L8H4 278 aa5.6□□□□□ -1.51
CLN3-207ENST00000395653 LCE1EQ5T753 118 aa5.48□□□□□ -1.53
CLN3-207ENST00000395653 KRTAP9-9Q9BYP9 154 aa5.48□□□□□ -1.53
CLN3-207ENST00000395653 MUC5ACP98088 5654 aa5.48□□□□□ -1.53
CLN3-207ENST00000395653 MUC5BQ9HC84 5762 aaPredicted RBP5.41□□□□□ -1.54
CLN3-207ENST00000395653 LUZP6Q538Z0 58 aa5.38□□□□□ -1.55
CLN3-207ENST00000395653 AHNAKQ09666 5890 aaKnown RBP5.32□□□□□ -1.56
CLN3-207ENST00000395653 LCE3DQ9BYE3 92 aa5.18□□□□□ -1.58
CLN3-207ENST00000395653 KRTAP4-2Q9BYR5 136 aa5.14□□□□□ -1.59
CLN3-207ENST00000395653 LCE1BQ5T7P3 118 aa5.1□□□□□ -1.59
CLN3-207ENST00000395653 LCE1CQ5T751 118 aa5.09□□□□□ -1.59
CLN3-207ENST00000395653 LCE3EQ5T5B0 92 aa4.93□□□□□ -1.62
CLN3-207ENST00000395653 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.68□□□□□ -1.66
CLN3-207ENST00000395653 H3BS24 57 aa4.6□□□□□ -1.67
CLN3-207ENST00000395653 KRTAP5-11Q6L8G4 156 aa4.59□□□□□ -1.67
CLN3-207ENST00000395653 NDUFAF8A1L188 74 aa4.53□□□□□ -1.68
CLN3-207ENST00000395653 KRTAP4-12Q9BQ66 201 aa4.51□□□□□ -1.69
CLN3-207ENST00000395653 LCE1FQ5T754 118 aa4.4□□□□□ -1.7
CLN3-207ENST00000395653 KRTAP21-2Q3LI59 83 aa4.31□□□□□ -1.72
CLN3-207ENST00000395653 A0A0A0MQY5 61 aa3.97□□□□□ -1.77
CLN3-207ENST00000395653 PHGR1C9JFL3 82 aa3.94□□□□□ -1.78
CLN3-207ENST00000395653 KRTAP4-4Q9BYR3 166 aa3.87□□□□□ -1.79
CLN3-207ENST00000395653 PRM1P04553 51 aa3.85□□□□□ -1.79
CLN3-207ENST00000395653 INE1O15225 51 aa3.71□□□□□ -1.82
CLN3-207ENST00000395653 MUC19Q7Z5P9 8384 aa3.6□□□□□ -1.83
CLN3-207ENST00000395653 KRTAP21-1Q3LI58 79 aa2.85□□□□□ -1.95
CLN3-207ENST00000395653 MUC16Q8WXI7 14507 aa2.55□□□□□ -2
Retrieved 77 of 20,778 RNA–protein pairs in 198.9 ms