RNA–Protein interactions for RNA: ENST00000374949.2

HLA-DQA1-202, Transcript of major histocompatibility complex, class II, DQ alpha 1, humanhuman

APPRIS P1 BASIC

Gene HLA-DQA1, Length 1,060 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1-202ENST00000374949 KRTAP4-8Q9BYQ9 185 aa4.36□□□□□ -1.71
HLA-DQA1-202ENST00000374949 LCE3BQ5TA77 95 aa4.34□□□□□ -1.71
HLA-DQA1-202ENST00000374949 KRTAP10-7P60409 375 aaPredicted RBP4.3□□□□□ -1.72
HLA-DQA1-202ENST00000374949 PRAC1Q96KF2 57 aa4.3□□□□□ -1.72
HLA-DQA1-202ENST00000374949 KRTAP10-12P60413 245 aa4.27□□□□□ -1.73
HLA-DQA1-202ENST00000374949 KRTAP23-1A1A580 65 aa4.26□□□□□ -1.73
HLA-DQA1-202ENST00000374949 DSTQ03001 7570 aaKnown RBP4.23□□□□□ -1.73
HLA-DQA1-202ENST00000374949 PP632Q6XCG6 107 aa4.23□□□□□ -1.73
HLA-DQA1-202ENST00000374949 LCE3AQ5TA76 89 aa4.19□□□□□ -1.74
HLA-DQA1-202ENST00000374949 KRTAP4-9Q9BYQ8 210 aa4.13□□□□□ -1.75
HLA-DQA1-202ENST00000374949 KRTAP19-5Q3LI72 72 aa4.05□□□□□ -1.76
HLA-DQA1-202ENST00000374949 KRTAP12-3P60328 96 aa4.04□□□□□ -1.76
HLA-DQA1-202ENST00000374949 LCE5AQ5TCM9 118 aa4.02□□□□□ -1.77
HLA-DQA1-202ENST00000374949 KRTAP19-7Q3SYF9 63 aa3.99□□□□□ -1.77
HLA-DQA1-202ENST00000374949 LCE1DQ5T752 114 aa3.99□□□□□ -1.77
HLA-DQA1-202ENST00000374949 HMCN1Q96RW7 5635 aa3.98□□□□□ -1.77
HLA-DQA1-202ENST00000374949 KRTAP19-3Q7Z4W3 81 aa3.98□□□□□ -1.77
HLA-DQA1-202ENST00000374949 MT1EP04732 61 aa3.97□□□□□ -1.77
HLA-DQA1-202ENST00000374949 H3BS24 57 aa3.96□□□□□ -1.78
HLA-DQA1-202ENST00000374949 KRTAP15-1Q3LI76 137 aa3.95□□□□□ -1.78
HLA-DQA1-202ENST00000374949 AHNAK2Q8IVF2 5795 aa3.93□□□□□ -1.78
HLA-DQA1-202ENST00000374949 MT4P47944 62 aa3.93□□□□□ -1.78
HLA-DQA1-202ENST00000374949 LCE4AQ5TA78 99 aa3.87□□□□□ -1.79
HLA-DQA1-202ENST00000374949 MT1LQ93083 61 aa3.86□□□□□ -1.79
HLA-DQA1-202ENST00000374949 KRTAP19-4Q3LI73 84 aa3.85□□□□□ -1.79
HLA-DQA1-202ENST00000374949 KRTAP5-10Q6L8G5 202 aa3.84□□□□□ -1.79
HLA-DQA1-202ENST00000374949 MT1GP13640 62 aa3.82□□□□□ -1.8
HLA-DQA1-202ENST00000374949 MT1MQ8N339 61 aa3.79□□□□□ -1.8
HLA-DQA1-202ENST00000374949 LCE3CQ5T5A8 94 aa3.78□□□□□ -1.8
HLA-DQA1-202ENST00000374949 KRTAP5-4Q6L8H1 288 aa3.77□□□□□ -1.81
HLA-DQA1-202ENST00000374949 KRTAP4-6Q9BYQ5 205 aa3.77□□□□□ -1.81
HLA-DQA1-202ENST00000374949 KRTAP4-3Q9BYR4 195 aa3.75□□□□□ -1.81
HLA-DQA1-202ENST00000374949 KRTAP5-7Q6L8G8 165 aa3.72□□□□□ -1.81
HLA-DQA1-202ENST00000374949 KRTAP4-7Q9BYR0 210 aa3.7□□□□□ -1.82
HLA-DQA1-202ENST00000374949 KRTAP5-3Q6L8H2 238 aa3.69□□□□□ -1.82
HLA-DQA1-202ENST00000374949 SPRR5A0A1B0GTR4 108 aa3.68□□□□□ -1.82
HLA-DQA1-202ENST00000374949 KRTAP20-2Q3LI61 65 aa3.59□□□□□ -1.83
HLA-DQA1-202ENST00000374949 LUZP6Q538Z0 58 aa3.56□□□□□ -1.84
HLA-DQA1-202ENST00000374949 KRTAP9-6A8MVA2 160 aa3.53□□□□□ -1.84
HLA-DQA1-202ENST00000374949 A0A0A0MQY5 61 aa3.52□□□□□ -1.85
HLA-DQA1-202ENST00000374949 KRTAP5-5Q701N2 237 aaPredicted RBP3.5□□□□□ -1.85
HLA-DQA1-202ENST00000374949 LOC100996750A0A140TA64 210 aa3.48□□□□□ -1.85
HLA-DQA1-202ENST00000374949 KRTAP12-4P60329 112 aa3.45□□□□□ -1.86
HLA-DQA1-202ENST00000374949 SYNE1Q8NF91 8797 aaKnown RBP3.4□□□□□ -1.87
HLA-DQA1-202ENST00000374949 NDUFAF8A1L188 74 aa3.38□□□□□ -1.87
HLA-DQA1-202ENST00000374949 AHNAKQ09666 5890 aaKnown RBP3.36□□□□□ -1.87
HLA-DQA1-202ENST00000374949 KRTAP4-11Q9BYQ6 195 aa3.33□□□□□ -1.88
HLA-DQA1-202ENST00000374949 MUC5ACP98088 5654 aa3.33□□□□□ -1.88
HLA-DQA1-202ENST00000374949 MT1AP04731 61 aa3.28□□□□□ -1.88
HLA-DQA1-202ENST00000374949 MUC5BQ9HC84 5762 aaPredicted RBP3.28□□□□□ -1.88
HLA-DQA1-202ENST00000374949 KRTAP5-2Q701N4 177 aa3.25□□□□□ -1.89
HLA-DQA1-202ENST00000374949 KRTAP5-8O75690 187 aa3.24□□□□□ -1.89
HLA-DQA1-202ENST00000374949 KRTAP6-1Q3LI64 71 aa3.24□□□□□ -1.89
HLA-DQA1-202ENST00000374949 KRTAP9-4Q9BYQ2 154 aa3.15□□□□□ -1.91
HLA-DQA1-202ENST00000374949 OBSCNQ5VST9 7968 aa3.14□□□□□ -1.91
HLA-DQA1-202ENST00000374949 KRTAP6-2Q3LI66 62 aa3.1□□□□□ -1.91
HLA-DQA1-202ENST00000374949 KRTAP9-9Q9BYP9 154 aa3.1□□□□□ -1.91
HLA-DQA1-202ENST00000374949 INE1O15225 51 aa3.05□□□□□ -1.92
HLA-DQA1-202ENST00000374949 MT3P25713 68 aa3□□□□□ -1.93
HLA-DQA1-202ENST00000374949 KRTAP5-1Q6L8H4 278 aa2.97□□□□□ -1.93
HLA-DQA1-202ENST00000374949 LCE3DQ9BYE3 92 aa2.83□□□□□ -1.96
HLA-DQA1-202ENST00000374949 LCE3EQ5T5B0 92 aa2.75□□□□□ -1.97
HLA-DQA1-202ENST00000374949 LCE1EQ5T753 118 aa2.71□□□□□ -1.98
HLA-DQA1-202ENST00000374949 LCE1BQ5T7P3 118 aa2.63□□□□□ -1.99
HLA-DQA1-202ENST00000374949 KRTAP4-2Q9BYR5 136 aa2.63□□□□□ -1.99
HLA-DQA1-202ENST00000374949 LCE1CQ5T751 118 aa2.52□□□□□ -2.01
HLA-DQA1-202ENST00000374949 KRTAP4-12Q9BQ66 201 aa2.5□□□□□ -2.01
HLA-DQA1-202ENST00000374949 KRTAP5-11Q6L8G4 156 aa2.35□□□□□ -2.03
HLA-DQA1-202ENST00000374949 PRM1P04553 51 aa2.34□□□□□ -2.03
HLA-DQA1-202ENST00000374949 LCE1FQ5T754 118 aa2.29□□□□□ -2.04
HLA-DQA1-202ENST00000374949 PHGR1C9JFL3 82 aa2.26□□□□□ -2.05
HLA-DQA1-202ENST00000374949 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.26□□□□□ -2.05
HLA-DQA1-202ENST00000374949 KRTAP21-2Q3LI59 83 aa2.12□□□□□ -2.07
HLA-DQA1-202ENST00000374949 KRTAP4-4Q9BYR3 166 aa2□□□□□ -2.09
HLA-DQA1-202ENST00000374949 MUC19Q7Z5P9 8384 aa1.95□□□□□ -2.1
HLA-DQA1-202ENST00000374949 KRTAP21-1Q3LI58 79 aa1.7□□□□□ -2.14
HLA-DQA1-202ENST00000374949 MUC16Q8WXI7 14507 aa1.35□□□□□ -2.19
Retrieved 77 of 20,778 RNA–protein pairs in 48.9 ms