RNA–Protein interactions for RNA: ENST00000368531.6

TPM3-211, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 1,115 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-211ENST00000368531 KRTAP23-1A1A580 65 aa5.31□□□□□ -1.56
TPM3-211ENST00000368531 LCE3AQ5TA76 89 aa5.24□□□□□ -1.57
TPM3-211ENST00000368531 SPRR2EP22531 72 aa5.22□□□□□ -1.57
TPM3-211ENST00000368531 SPRR2BP35325 72 aa5.22□□□□□ -1.57
TPM3-211ENST00000368531 SPRR2AP35326 72 aa5.22□□□□□ -1.57
TPM3-211ENST00000368531 KRTAP25-1Q3LHN0 102 aa5.21□□□□□ -1.58
TPM3-211ENST00000368531 BRK1Q8WUW1 75 aa5.2□□□□□ -1.58
TPM3-211ENST00000368531 KRTAP19-5Q3LI72 72 aa5.18□□□□□ -1.58
TPM3-211ENST00000368531 KRTAP19-7Q3SYF9 63 aa5.18□□□□□ -1.58
TPM3-211ENST00000368531 ROMO1P60602 79 aa5.17□□□□□ -1.58
TPM3-211ENST00000368531 LCE1AQ5T7P2 110 aa5.16□□□□□ -1.58
TPM3-211ENST00000368531 MT1EP04732 61 aa5.12□□□□□ -1.59
TPM3-211ENST00000368531 MUC12Q9UKN1 5478 aa5.07□□□□□ -1.6
TPM3-211ENST00000368531 SPRR2DP22532 72 aa5.03□□□□□ -1.6
TPM3-211ENST00000368531 KRTAP12-3P60328 96 aa5.02□□□□□ -1.61
TPM3-211ENST00000368531 NEBP20929 6669 aa5.01□□□□□ -1.61
TPM3-211ENST00000368531 KRTAP19-3Q7Z4W3 81 aa5.01□□□□□ -1.61
TPM3-211ENST00000368531 KRTAP20-1Q3LI63 56 aa4.98□□□□□ -1.61
TPM3-211ENST00000368531 MDN1Q9NU22 5596 aa4.96□□□□□ -1.61
TPM3-211ENST00000368531 MT1LQ93083 61 aa4.96□□□□□ -1.62
TPM3-211ENST00000368531 MT1GP13640 62 aa4.93□□□□□ -1.62
TPM3-211ENST00000368531 KRTAP2-3P0C7H8 128 aa4.92□□□□□ -1.62
TPM3-211ENST00000368531 KRTAP2-4Q9BYR9 128 aa4.92□□□□□ -1.62
TPM3-211ENST00000368531 PMAIP1Q13794 54 aa4.9□□□□□ -1.63
TPM3-211ENST00000368531 PP632Q6XCG6 107 aa4.9□□□□□ -1.63
TPM3-211ENST00000368531 MT1MQ8N339 61 aa4.86□□□□□ -1.63
TPM3-211ENST00000368531 KRTAP4-3Q9BYR4 195 aa4.79□□□□□ -1.64
TPM3-211ENST00000368531 PRO0628Q9UI54 55 aa4.79□□□□□ -1.64
TPM3-211ENST00000368531 KRTAP2-2Q9BYT5 123 aa4.78□□□□□ -1.64
TPM3-211ENST00000368531 KRTAP2-1Q9BYU5 128 aa4.78□□□□□ -1.64
TPM3-211ENST00000368531 A0A0A0MQY5 61 aa4.71□□□□□ -1.66
TPM3-211ENST00000368531 PRAC1Q96KF2 57 aa4.66□□□□□ -1.66
TPM3-211ENST00000368531 LCE3CQ5T5A8 94 aa4.65□□□□□ -1.67
TPM3-211ENST00000368531 DSTQ03001 7570 aaKnown RBP4.62□□□□□ -1.67
TPM3-211ENST00000368531 KTN1-AS1Q86SY8 53 aa4.51□□□□□ -1.69
TPM3-211ENST00000368531 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.42□□□□□ -1.7
TPM3-211ENST00000368531 MT4P47944 62 aa4.4□□□□□ -1.71
TPM3-211ENST00000368531 KRTAP9-6A8MVA2 160 aa4.39□□□□□ -1.71
TPM3-211ENST00000368531 KRTAP5-11Q6L8G4 156 aa4.39□□□□□ -1.71
TPM3-211ENST00000368531 KRTAP5-4Q6L8H1 288 aa4.39□□□□□ -1.71
TPM3-211ENST00000368531 KRTAP5-5Q701N2 237 aaPredicted RBP4.39□□□□□ -1.71
TPM3-211ENST00000368531 LCE1EQ5T753 118 aa4.24□□□□□ -1.73
TPM3-211ENST00000368531 MT1AP04731 61 aa4.22□□□□□ -1.73
TPM3-211ENST00000368531 KRTAP12-4P60329 112 aa4.22□□□□□ -1.73
TPM3-211ENST00000368531 KRTAP6-1Q3LI64 71 aa4.2□□□□□ -1.74
TPM3-211ENST00000368531 SPRR5A0A1B0GTR4 108 aa4.15□□□□□ -1.75
TPM3-211ENST00000368531 KRTAP20-2Q3LI61 65 aa4.15□□□□□ -1.75
TPM3-211ENST00000368531 SYNE1Q8NF91 8797 aaKnown RBP4.08□□□□□ -1.76
TPM3-211ENST00000368531 MT3P25713 68 aa4.08□□□□□ -1.76
TPM3-211ENST00000368531 HMCN1Q96RW7 5635 aa4.06□□□□□ -1.76
TPM3-211ENST00000368531 KRTAP6-2Q3LI66 62 aa3.95□□□□□ -1.78
TPM3-211ENST00000368531 KRTAP5-2Q701N4 177 aa3.91□□□□□ -1.78
TPM3-211ENST00000368531 GPR98Q8WXG9 6306 aa3.89□□□□□ -1.79
TPM3-211ENST00000368531 AHNAK2Q8IVF2 5795 aa3.86□□□□□ -1.79
TPM3-211ENST00000368531 LUZP6Q538Z0 58 aa3.85□□□□□ -1.79
TPM3-211ENST00000368531 KRTAP5-10Q6L8G5 202 aa3.84□□□□□ -1.79
TPM3-211ENST00000368531 KRTAP5-1Q6L8H4 278 aa3.84□□□□□ -1.79
TPM3-211ENST00000368531 KRTAP4-4Q9BYR3 166 aa3.68□□□□□ -1.82
TPM3-211ENST00000368531 KRTAP5-7Q6L8G8 165 aa3.64□□□□□ -1.83
TPM3-211ENST00000368531 LCE1FQ5T754 118 aa3.59□□□□□ -1.83
TPM3-211ENST00000368531 KRTAP5-8O75690 187 aa3.57□□□□□ -1.84
TPM3-211ENST00000368531 NDUFAF8A1L188 74 aa3.53□□□□□ -1.84
TPM3-211ENST00000368531 OBSCNQ5VST9 7968 aa3.5□□□□□ -1.85
TPM3-211ENST00000368531 LCE3DQ9BYE3 92 aa3.43□□□□□ -1.86
TPM3-211ENST00000368531 LCE3EQ5T5B0 92 aa3.29□□□□□ -1.88
TPM3-211ENST00000368531 LCE1BQ5T7P3 118 aa3.28□□□□□ -1.88
TPM3-211ENST00000368531 MUC5ACP98088 5654 aa3.18□□□□□ -1.9
TPM3-211ENST00000368531 LCE1CQ5T751 118 aa3.17□□□□□ -1.9
TPM3-211ENST00000368531 MUC5BQ9HC84 5762 aaPredicted RBP3.12□□□□□ -1.91
TPM3-211ENST00000368531 AHNAKQ09666 5890 aaKnown RBP3.08□□□□□ -1.92
TPM3-211ENST00000368531 INE1O15225 51 aa2.78□□□□□ -1.96
TPM3-211ENST00000368531 KRTAP21-2Q3LI59 83 aa2.74□□□□□ -1.97
TPM3-211ENST00000368531 PRM1P04553 51 aa2.69□□□□□ -1.98
TPM3-211ENST00000368531 PHGR1C9JFL3 82 aa2.45□□□□□ -2.02
TPM3-211ENST00000368531 MUC19Q7Z5P9 8384 aa2.33□□□□□ -2.04
TPM3-211ENST00000368531 KRTAP21-1Q3LI58 79 aa1.67□□□□□ -2.14
TPM3-211ENST00000368531 MUC16Q8WXI7 14507 aa1.6□□□□□ -2.15
Retrieved 77 of 20,778 RNA–protein pairs in 29.9 ms