RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 KRTAP19-6Q3LI70 58 aa4.23□□□□□ -1.73
SHMT2-201ENST00000328923 KRTAP19-5Q3LI72 72 aa4.14□□□□□ -1.75
SHMT2-201ENST00000328923 KRTAP6-3Q3LI67 103 aa4.14□□□□□ -1.75
SHMT2-201ENST00000328923 KRTAP19-4Q3LI73 84 aa4.05□□□□□ -1.76
SHMT2-201ENST00000328923 NEBP20929 6669 aa4.05□□□□□ -1.76
SHMT2-201ENST00000328923 KRTAP12-4P60329 112 aa4.02□□□□□ -1.77
SHMT2-201ENST00000328923 MUC12Q9UKN1 5478 aa4.01□□□□□ -1.77
SHMT2-201ENST00000328923 KRTAP4-8A0A0G2JLE6 195 aa4□□□□□ -1.77
SHMT2-201ENST00000328923 KRTAP4-8Q9BYQ9 185 aa4□□□□□ -1.77
SHMT2-201ENST00000328923 KRTAP4-7Q9BYR0 210 aa3.99□□□□□ -1.77
SHMT2-201ENST00000328923 KRTAP20-1Q3LI63 56 aa3.93□□□□□ -1.78
SHMT2-201ENST00000328923 KRTAP19-7Q3SYF9 63 aa3.9□□□□□ -1.79
SHMT2-201ENST00000328923 MDN1Q9NU22 5596 aa3.88□□□□□ -1.79
SHMT2-201ENST00000328923 KRTAP5-9P26371 169 aa3.87□□□□□ -1.79
SHMT2-201ENST00000328923 KRTAP2-2Q9BYT5 123 aa3.83□□□□□ -1.8
SHMT2-201ENST00000328923 MT1LQ93083 61 aa3.82□□□□□ -1.8
SHMT2-201ENST00000328923 LCE1AQ5T7P2 110 aa3.79□□□□□ -1.8
SHMT2-201ENST00000328923 MT1EP04732 61 aa3.78□□□□□ -1.8
SHMT2-201ENST00000328923 SPRR2FQ96RM1 72 aa3.75□□□□□ -1.81
SHMT2-201ENST00000328923 SPRR2EP22531 72 aa3.73□□□□□ -1.81
SHMT2-201ENST00000328923 SPRR2BP35325 72 aa3.73□□□□□ -1.81
SHMT2-201ENST00000328923 SPRR2AP35326 72 aa3.73□□□□□ -1.81
SHMT2-201ENST00000328923 DSTQ03001 7570 aaKnown RBP3.68□□□□□ -1.82
SHMT2-201ENST00000328923 LOC100996750A0A140TA64 210 aa3.68□□□□□ -1.82
SHMT2-201ENST00000328923 PRM1P04553 51 aa3.67□□□□□ -1.82
SHMT2-201ENST00000328923 KRTAP4-3Q9BYR4 195 aa3.62□□□□□ -1.83
SHMT2-201ENST00000328923 SPRR2DP22532 72 aa3.61□□□□□ -1.83
SHMT2-201ENST00000328923 LCE1EQ5T753 118 aa3.61□□□□□ -1.83
SHMT2-201ENST00000328923 KRTAP4-9Q9BYQ8 210 aa3.6□□□□□ -1.83
SHMT2-201ENST00000328923 KRTAP19-3Q7Z4W3 81 aa3.57□□□□□ -1.84
SHMT2-201ENST00000328923 SYNE1Q8NF91 8797 aaKnown RBP3.56□□□□□ -1.84
SHMT2-201ENST00000328923 KRTAP5-5Q701N2 237 aaPredicted RBP3.55□□□□□ -1.84
SHMT2-201ENST00000328923 MT1GP13640 62 aa3.54□□□□□ -1.84
SHMT2-201ENST00000328923 MT1MQ8N339 61 aa3.52□□□□□ -1.85
SHMT2-201ENST00000328923 LCE3BQ5TA77 95 aa3.52□□□□□ -1.85
SHMT2-201ENST00000328923 LCE5AQ5TCM9 118 aa3.48□□□□□ -1.85
SHMT2-201ENST00000328923 LCE1DQ5T752 114 aa3.45□□□□□ -1.86
SHMT2-201ENST00000328923 MT1AP04731 61 aa3.44□□□□□ -1.86
SHMT2-201ENST00000328923 LCE3EQ5T5B0 92 aa3.42□□□□□ -1.86
SHMT2-201ENST00000328923 GPR98Q8WXG9 6306 aa3.41□□□□□ -1.86
SHMT2-201ENST00000328923 LCE3DQ9BYE3 92 aa3.4□□□□□ -1.86
SHMT2-201ENST00000328923 KRTAP6-2Q3LI66 62 aa3.31□□□□□ -1.88
SHMT2-201ENST00000328923 OBSCNQ5VST9 7968 aa3.29□□□□□ -1.88
SHMT2-201ENST00000328923 KRTAP6-1Q3LI64 71 aa3.22□□□□□ -1.89
SHMT2-201ENST00000328923 HMCN1Q96RW7 5635 aa3.2□□□□□ -1.9
SHMT2-201ENST00000328923 MT4P47944 62 aa3.18□□□□□ -1.9
SHMT2-201ENST00000328923 LCE4AQ5TA78 99 aa3.15□□□□□ -1.91
SHMT2-201ENST00000328923 LCE1FQ5T754 118 aa3.14□□□□□ -1.91
SHMT2-201ENST00000328923 AHNAK2Q8IVF2 5795 aa3.13□□□□□ -1.91
SHMT2-201ENST00000328923 KRTAP9-4Q9BYQ2 154 aa3.09□□□□□ -1.91
SHMT2-201ENST00000328923 KRTAP5-10Q6L8G5 202 aa3.08□□□□□ -1.92
SHMT2-201ENST00000328923 KRTAP4-6Q9BYQ5 205 aa3.06□□□□□ -1.92
SHMT2-201ENST00000328923 KRTAP5-4Q6L8H1 288 aa3.05□□□□□ -1.92
SHMT2-201ENST00000328923 KRTAP9-9Q9BYP9 154 aa2.99□□□□□ -1.93
SHMT2-201ENST00000328923 KRTAP5-7Q6L8G8 165 aa2.97□□□□□ -1.93
SHMT2-201ENST00000328923 KRTAP5-3Q6L8H2 238 aa2.96□□□□□ -1.93
SHMT2-201ENST00000328923 KRTAP20-2Q3LI61 65 aa2.91□□□□□ -1.94
SHMT2-201ENST00000328923 MT3P25713 68 aa2.87□□□□□ -1.95
SHMT2-201ENST00000328923 KRTAP4-11Q9BYQ6 195 aa2.74□□□□□ -1.97
SHMT2-201ENST00000328923 KRTAP5-2Q701N4 177 aa2.73□□□□□ -1.97
SHMT2-201ENST00000328923 MUC19Q7Z5P9 8384 aa2.62□□□□□ -1.99
SHMT2-201ENST00000328923 MUC5ACP98088 5654 aa2.62□□□□□ -1.99
SHMT2-201ENST00000328923 MUC5BQ9HC84 5762 aaPredicted RBP2.61□□□□□ -1.99
SHMT2-201ENST00000328923 KRTAP5-8O75690 187 aa2.61□□□□□ -1.99
SHMT2-201ENST00000328923 AHNAKQ09666 5890 aaKnown RBP2.61□□□□□ -1.99
SHMT2-201ENST00000328923 KRTAP5-1Q6L8H4 278 aa2.41□□□□□ -2.02
SHMT2-201ENST00000328923 LCE1CQ5T751 118 aa2.4□□□□□ -2.02
SHMT2-201ENST00000328923 LCE1BQ5T7P3 118 aa2.4□□□□□ -2.02
SHMT2-201ENST00000328923 KRTAP4-12Q9BQ66 201 aa2.39□□□□□ -2.03
SHMT2-201ENST00000328923 KRTAP21-1Q3LI58 79 aa2.34□□□□□ -2.04
SHMT2-201ENST00000328923 KRTAP4-2Q9BYR5 136 aa2.26□□□□□ -2.05
SHMT2-201ENST00000328923 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.12□□□□□ -2.07
SHMT2-201ENST00000328923 KRTAP21-2Q3LI59 83 aa2.09□□□□□ -2.08
SHMT2-201ENST00000328923 KRTAP5-11Q6L8G4 156 aa1.99□□□□□ -2.09
SHMT2-201ENST00000328923 KRTAP4-4Q9BYR3 166 aa1.97□□□□□ -2.09
SHMT2-201ENST00000328923 PHGR1C9JFL3 82 aa1.82□□□□□ -2.12
SHMT2-201ENST00000328923 MUC16Q8WXI7 14507 aa1.2□□□□□ -2.22
Retrieved 77 of 20,778 RNA–protein pairs in 102.2 ms