RNA–Protein interactions for RNA: ENST00000288398.10

TPM1-202, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-202ENST00000288398 A0A1B0GU33 70 aa5.14□□□□□ -1.59
TPM1-202ENST00000288398 MT1GP13640 62 aa5.11□□□□□ -1.59
TPM1-202ENST00000288398 KRTAP19-5Q3LI72 72 aa5.11□□□□□ -1.59
TPM1-202ENST00000288398 CDC42SE1Q9NRR8 79 aa5.11□□□□□ -1.59
TPM1-202ENST00000288398 A6NED7 52 aa5.1□□□□□ -1.59
TPM1-202ENST00000288398 KRTAP12-1P59990 96 aa5.06□□□□□ -1.6
TPM1-202ENST00000288398 MIR22HGQ0VDD5 57 aa5.06□□□□□ -1.6
TPM1-202ENST00000288398 LCE1DQ5T752 114 aa5.04□□□□□ -1.6
TPM1-202ENST00000288398 PRO0628Q9UI54 55 aa5.04□□□□□ -1.6
TPM1-202ENST00000288398 BRK1Q8WUW1 75 aa5.03□□□□□ -1.6
TPM1-202ENST00000288398 LCE4AQ5TA78 99 aa5.02□□□□□ -1.61
TPM1-202ENST00000288398 MT4P47944 62 aa5.01□□□□□ -1.61
TPM1-202ENST00000288398 MT1MQ8N339 61 aa4.99□□□□□ -1.61
TPM1-202ENST00000288398 A8MU10 97 aa4.97□□□□□ -1.61
TPM1-202ENST00000288398 TNP1P09430 55 aa4.96□□□□□ -1.62
TPM1-202ENST00000288398 MT1LQ93083 61 aa4.96□□□□□ -1.62
TPM1-202ENST00000288398 HMCN1Q96RW7 5635 aa4.95□□□□□ -1.62
TPM1-202ENST00000288398 C10orf95Q9H7T3 257 aa4.93□□□□□ -1.62
TPM1-202ENST00000288398 LCE3AQ5TA76 89 aa4.92□□□□□ -1.62
TPM1-202ENST00000288398 KRTAP4-3Q9BYR4 195 aa4.86□□□□□ -1.63
TPM1-202ENST00000288398 LOC100996750A0A140TA64 210 aa4.83□□□□□ -1.64
TPM1-202ENST00000288398 KRTAP4-6Q9BYQ5 205 aa4.83□□□□□ -1.64
TPM1-202ENST00000288398 K7ERS5 55 aa4.82□□□□□ -1.64
TPM1-202ENST00000288398 KRTAP5-4Q6L8H1 288 aa4.82□□□□□ -1.64
TPM1-202ENST00000288398 AHNAK2Q8IVF2 5795 aa4.81□□□□□ -1.64
TPM1-202ENST00000288398 PMAIP1Q13794 54 aa4.8□□□□□ -1.64
TPM1-202ENST00000288398 KRTAP12-3P60328 96 aa4.75□□□□□ -1.65
TPM1-202ENST00000288398 KRTAP5-10Q6L8G5 202 aa4.74□□□□□ -1.65
TPM1-202ENST00000288398 KRTAP4-7Q9BYR0 210 aa4.69□□□□□ -1.66
TPM1-202ENST00000288398 KRTAP15-1Q3LI76 137 aa4.67□□□□□ -1.66
TPM1-202ENST00000288398 ROMO1P60602 79 aa4.65□□□□□ -1.67
TPM1-202ENST00000288398 KTN1-AS1Q86SY8 53 aa4.64□□□□□ -1.67
TPM1-202ENST00000288398 KRTAP5-3Q6L8H2 238 aa4.62□□□□□ -1.67
TPM1-202ENST00000288398 KRTAP12-4P60329 112 aa4.6□□□□□ -1.67
TPM1-202ENST00000288398 KRTAP20-2Q3LI61 65 aa4.6□□□□□ -1.67
TPM1-202ENST00000288398 KRTAP5-7Q6L8G8 165 aa4.6□□□□□ -1.67
TPM1-202ENST00000288398 SPRR5A0A1B0GTR4 108 aa4.58□□□□□ -1.68
TPM1-202ENST00000288398 KRTAP25-1Q3LHN0 102 aa4.57□□□□□ -1.68
TPM1-202ENST00000288398 KRTAP5-5Q701N2 237 aaPredicted RBP4.55□□□□□ -1.68
TPM1-202ENST00000288398 PRAC1Q96KF2 57 aa4.51□□□□□ -1.69
TPM1-202ENST00000288398 KRTAP4-12Q9BQ66 201 aa4.38□□□□□ -1.71
TPM1-202ENST00000288398 KRTAP9-4Q9BYQ2 154 aa4.36□□□□□ -1.71
TPM1-202ENST00000288398 SYNE1Q8NF91 8797 aaKnown RBP4.36□□□□□ -1.71
TPM1-202ENST00000288398 LCE3CQ5T5A8 94 aa4.34□□□□□ -1.71
TPM1-202ENST00000288398 KRTAP4-11Q9BYQ6 195 aa4.25□□□□□ -1.73
TPM1-202ENST00000288398 MT1AP04731 61 aa4.24□□□□□ -1.73
TPM1-202ENST00000288398 KRTAP9-9Q9BYP9 154 aa4.24□□□□□ -1.73
TPM1-202ENST00000288398 NDUFAF8A1L188 74 aa4.21□□□□□ -1.74
TPM1-202ENST00000288398 KRTAP6-1Q3LI64 71 aa4.2□□□□□ -1.74
TPM1-202ENST00000288398 KRTAP5-2Q701N4 177 aa4.19□□□□□ -1.74
TPM1-202ENST00000288398 KRTAP5-8O75690 187 aa4.07□□□□□ -1.76
TPM1-202ENST00000288398 KRTAP6-2Q3LI66 62 aa4.07□□□□□ -1.76
TPM1-202ENST00000288398 AHNAKQ09666 5890 aaKnown RBP4.03□□□□□ -1.76
TPM1-202ENST00000288398 MUC5ACP98088 5654 aa4.02□□□□□ -1.77
TPM1-202ENST00000288398 KRTAP9-6A8MVA2 160 aa4.01□□□□□ -1.77
TPM1-202ENST00000288398 MUC5BQ9HC84 5762 aaPredicted RBP3.98□□□□□ -1.77
TPM1-202ENST00000288398 OBSCNQ5VST9 7968 aa3.97□□□□□ -1.77
TPM1-202ENST00000288398 MT3P25713 68 aa3.92□□□□□ -1.78
TPM1-202ENST00000288398 KRTAP5-1Q6L8H4 278 aa3.79□□□□□ -1.8
TPM1-202ENST00000288398 KRTAP4-2Q9BYR5 136 aa3.75□□□□□ -1.81
TPM1-202ENST00000288398 LUZP6Q538Z0 58 aa3.65□□□□□ -1.83
TPM1-202ENST00000288398 LCE1EQ5T753 118 aa3.61□□□□□ -1.83
TPM1-202ENST00000288398 LCE1BQ5T7P3 118 aa3.46□□□□□ -1.86
TPM1-202ENST00000288398 LCE1CQ5T751 118 aa3.34□□□□□ -1.87
TPM1-202ENST00000288398 LCE1FQ5T754 118 aa3.34□□□□□ -1.87
TPM1-202ENST00000288398 LCE3DQ9BYE3 92 aa3.12□□□□□ -1.91
TPM1-202ENST00000288398 INE1O15225 51 aa3.04□□□□□ -1.92
TPM1-202ENST00000288398 KRTAP5-11Q6L8G4 156 aa3.04□□□□□ -1.92
TPM1-202ENST00000288398 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.99□□□□□ -1.93
TPM1-202ENST00000288398 LCE3EQ5T5B0 92 aa2.9□□□□□ -1.95
TPM1-202ENST00000288398 PHGR1C9JFL3 82 aa2.83□□□□□ -1.96
TPM1-202ENST00000288398 KRTAP21-2Q3LI59 83 aa2.74□□□□□ -1.97
TPM1-202ENST00000288398 KRTAP4-4Q9BYR3 166 aa2.58□□□□□ -2
TPM1-202ENST00000288398 MUC19Q7Z5P9 8384 aa2.45□□□□□ -2.02
TPM1-202ENST00000288398 PRM1P04553 51 aa2.37□□□□□ -2.03
TPM1-202ENST00000288398 KRTAP21-1Q3LI58 79 aa2.16□□□□□ -2.06
TPM1-202ENST00000288398 MUC16Q8WXI7 14507 aa1.71□□□□□ -2.13
Retrieved 77 of 20,778 RNA–protein pairs in 10.3 ms