RNA–Protein interactions for RNA: ENST00000279452.10

CD44-204, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 862 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-204ENST00000279452 SPRR2FQ96RM1 72 aa2.61□□□□□ -1.99
CD44-204ENST00000279452 UQCR11O14957 56 aa2.59□□□□□ -1.99
CD44-204ENST00000279452 KRTAP5-9P26371 169 aa2.59□□□□□ -1.99
CD44-204ENST00000279452 CDC42SE1Q9NRR8 79 aa2.59□□□□□ -1.99
CD44-204ENST00000279452 KRTAP10-12P60413 245 aa2.58□□□□□ -2
CD44-204ENST00000279452 ROMO1P60602 79 aa2.56□□□□□ -2
CD44-204ENST00000279452 SPRR2EP22531 72 aa2.55□□□□□ -2
CD44-204ENST00000279452 SPRR2BP35325 72 aa2.55□□□□□ -2
CD44-204ENST00000279452 SPRR2AP35326 72 aa2.55□□□□□ -2
CD44-204ENST00000279452 MIR22HGQ0VDD5 57 aa2.55□□□□□ -2
CD44-204ENST00000279452 KMT2DO14686 5537 aa2.51□□□□□ -2.01
CD44-204ENST00000279452 NEBP20929 6669 aa2.5□□□□□ -2.01
CD44-204ENST00000279452 TNP1P09430 55 aa2.5□□□□□ -2.01
CD44-204ENST00000279452 KRTAP20-1Q3LI63 56 aa2.49□□□□□ -2.01
CD44-204ENST00000279452 LCE1AQ5T7P2 110 aa2.48□□□□□ -2.01
CD44-204ENST00000279452 C10orf95Q9H7T3 257 aa2.48□□□□□ -2.01
CD44-204ENST00000279452 SPRR2DP22532 72 aa2.47□□□□□ -2.01
CD44-204ENST00000279452 MUC12Q9UKN1 5478 aa2.46□□□□□ -2.02
CD44-204ENST00000279452 LCE3AQ5TA76 89 aa2.44□□□□□ -2.02
CD44-204ENST00000279452 KRTAP2-3P0C7H8 128 aa2.43□□□□□ -2.02
CD44-204ENST00000279452 KRTAP19-5Q3LI72 72 aa2.43□□□□□ -2.02
CD44-204ENST00000279452 KRTAP2-4Q9BYR9 128 aa2.43□□□□□ -2.02
CD44-204ENST00000279452 MT1EP04732 61 aa2.42□□□□□ -2.02
CD44-204ENST00000279452 KRTAP19-7Q3SYF9 63 aa2.42□□□□□ -2.02
CD44-204ENST00000279452 NDUFAF8A1L188 74 aa2.39□□□□□ -2.03
CD44-204ENST00000279452 KRTAP25-1Q3LHN0 102 aa2.39□□□□□ -2.03
CD44-204ENST00000279452 KRTAP19-3Q7Z4W3 81 aa2.38□□□□□ -2.03
CD44-204ENST00000279452 MDN1Q9NU22 5596 aa2.37□□□□□ -2.03
CD44-204ENST00000279452 PP632Q6XCG6 107 aa2.35□□□□□ -2.03
CD44-204ENST00000279452 KRTAP2-2Q9BYT5 123 aa2.35□□□□□ -2.03
CD44-204ENST00000279452 KRTAP2-1Q9BYU5 128 aa2.35□□□□□ -2.03
CD44-204ENST00000279452 KRTAP12-3P60328 96 aa2.34□□□□□ -2.03
CD44-204ENST00000279452 MT1GP13640 62 aa2.33□□□□□ -2.04
CD44-204ENST00000279452 MT1LQ93083 61 aa2.33□□□□□ -2.04
CD44-204ENST00000279452 MT1MQ8N339 61 aa2.3□□□□□ -2.04
CD44-204ENST00000279452 GPR98Q8WXG9 6306 aa2.29□□□□□ -2.04
CD44-204ENST00000279452 KRTAP4-3Q9BYR4 195 aa2.26□□□□□ -2.05
CD44-204ENST00000279452 KRTAP5-11Q6L8G4 156 aa2.23□□□□□ -2.05
CD44-204ENST00000279452 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.22□□□□□ -2.05
CD44-204ENST00000279452 DSTQ03001 7570 aaKnown RBP2.2□□□□□ -2.06
CD44-204ENST00000279452 MT4P47944 62 aa2.16□□□□□ -2.06
CD44-204ENST00000279452 LCE3CQ5T5A8 94 aa2.15□□□□□ -2.07
CD44-204ENST00000279452 INE1O15225 51 aa2.14□□□□□ -2.07
CD44-204ENST00000279452 LCE1EQ5T753 118 aa2.09□□□□□ -2.07
CD44-204ENST00000279452 KRTAP5-4Q6L8H1 288 aa2.09□□□□□ -2.07
CD44-204ENST00000279452 KRTAP5-5Q701N2 237 aaPredicted RBP2.06□□□□□ -2.08
CD44-204ENST00000279452 KRTAP12-4P60329 112 aa2.04□□□□□ -2.08
CD44-204ENST00000279452 KRTAP9-6A8MVA2 160 aa2□□□□□ -2.09
CD44-204ENST00000279452 KRTAP20-2Q3LI61 65 aa2□□□□□ -2.09
CD44-204ENST00000279452 SPRR5A0A1B0GTR4 108 aa1.98□□□□□ -2.09
CD44-204ENST00000279452 MT1AP04731 61 aa1.98□□□□□ -2.09
CD44-204ENST00000279452 HMCN1Q96RW7 5635 aa1.97□□□□□ -2.09
CD44-204ENST00000279452 KRTAP6-1Q3LI64 71 aa1.96□□□□□ -2.1
CD44-204ENST00000279452 MT3P25713 68 aa1.95□□□□□ -2.1
CD44-204ENST00000279452 KRTAP5-1Q6L8H4 278 aa1.95□□□□□ -2.1
CD44-204ENST00000279452 SYNE1Q8NF91 8797 aaKnown RBP1.93□□□□□ -2.1
CD44-204ENST00000279452 AHNAK2Q8IVF2 5795 aa1.9□□□□□ -2.1
CD44-204ENST00000279452 KRTAP5-10Q6L8G5 202 aa1.9□□□□□ -2.11
CD44-204ENST00000279452 KRTAP4-4Q9BYR3 166 aa1.88□□□□□ -2.11
CD44-204ENST00000279452 KRTAP6-2Q3LI66 62 aa1.87□□□□□ -2.11
CD44-204ENST00000279452 KRTAP5-2Q701N4 177 aa1.84□□□□□ -2.11
CD44-204ENST00000279452 LCE1FQ5T754 118 aa1.83□□□□□ -2.12
CD44-204ENST00000279452 KRTAP5-7Q6L8G8 165 aa1.8□□□□□ -2.12
CD44-204ENST00000279452 OBSCNQ5VST9 7968 aa1.79□□□□□ -2.12
CD44-204ENST00000279452 KRTAP5-8O75690 187 aa1.72□□□□□ -2.13
CD44-204ENST00000279452 AHNAKQ09666 5890 aaKnown RBP1.7□□□□□ -2.14
CD44-204ENST00000279452 MUC5BQ9HC84 5762 aaPredicted RBP1.64□□□□□ -2.15
CD44-204ENST00000279452 MUC5ACP98088 5654 aa1.64□□□□□ -2.15
CD44-204ENST00000279452 LCE3EQ5T5B0 92 aa1.6□□□□□ -2.15
CD44-204ENST00000279452 LCE1BQ5T7P3 118 aa1.58□□□□□ -2.16
CD44-204ENST00000279452 LCE3DQ9BYE3 92 aa1.58□□□□□ -2.16
CD44-204ENST00000279452 LCE1CQ5T751 118 aa1.49□□□□□ -2.17
CD44-204ENST00000279452 KRTAP21-2Q3LI59 83 aa1.27□□□□□ -2.21
CD44-204ENST00000279452 MUC19Q7Z5P9 8384 aa1.22□□□□□ -2.21
CD44-204ENST00000279452 PRM1P04553 51 aa1.21□□□□□ -2.22
CD44-204ENST00000279452 PHGR1C9JFL3 82 aa1.16□□□□□ -2.22
CD44-204ENST00000279452 KRTAP21-1Q3LI58 79 aa0.85□□□□□ -2.27
CD44-204ENST00000279452 MUC16Q8WXI7 14507 aa0.72□□□□□ -2.29
Retrieved 78 of 20,778 RNA–protein pairs in 10.9 ms