RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 ZNF469Q96JG9 3925 aaPredicted RBP1.82□□□□□ -2.12
SCN1A-220ENST00000641603 LCE3CQ5T5A8 94 aa1.81□□□□□ -2.12
SCN1A-220ENST00000641603 LYSTQ99698 3801 aa1.81□□□□□ -2.12
SCN1A-220ENST00000641603 LAMA5O15230 3695 aa1.8□□□□□ -2.12
SCN1A-220ENST00000641603 LORP23490 312 aaPredicted RBP1.8□□□□□ -2.12
SCN1A-220ENST00000641603 DMDP11532 3685 aa1.79□□□□□ -2.12
SCN1A-220ENST00000641603 MYO15AQ9UKN7 3530 aa1.79□□□□□ -2.12
SCN1A-220ENST00000641603 WDFY3Q8IZQ1 3526 aa1.78□□□□□ -2.12
SCN1A-220ENST00000641603 ASPMQ8IZT6 3477 aa1.78□□□□□ -2.12
SCN1A-220ENST00000641603 SMG1Q96Q15 3661 aaKnown RBP1.78□□□□□ -2.13
SCN1A-220ENST00000641603 KMT2AQ03164 3969 aa1.77□□□□□ -2.13
SCN1A-220ENST00000641603 FLGP20930 4061 aaPredicted RBP1.76□□□□□ -2.13
SCN1A-220ENST00000641603 KRTAP10-5P60370 271 aa1.76□□□□□ -2.13
SCN1A-220ENST00000641603 RELNP78509 3460 aa1.75□□□□□ -2.13
SCN1A-220ENST00000641603 KRTAP17-1Q9BYP8 105 aa1.74□□□□□ -2.13
SCN1A-220ENST00000641603 KRTAP19-8Q3LI54 63 aa1.72□□□□□ -2.13
SCN1A-220ENST00000641603 ANK3Q12955 4377 aaKnown RBP1.72□□□□□ -2.13
SCN1A-220ENST00000641603 MT3P25713 68 aa1.69□□□□□ -2.14
SCN1A-220ENST00000641603 DNAH2Q9P225 4427 aa1.69□□□□□ -2.14
SCN1A-220ENST00000641603 MUC3AQ02505 3323 aa1.68□□□□□ -2.14
SCN1A-220ENST00000641603 PKHD1L1Q86WI1 4243 aa1.67□□□□□ -2.14
SCN1A-220ENST00000641603 MT2AP02795 61 aa1.67□□□□□ -2.14
SCN1A-220ENST00000641603 KRTAP19-5Q3LI72 72 aa1.66□□□□□ -2.14
SCN1A-220ENST00000641603 KRTAP12-4P60329 112 aa1.66□□□□□ -2.14
SCN1A-220ENST00000641603 PKHD1P08F94 4074 aa1.65□□□□□ -2.15
SCN1A-220ENST00000641603 CRCT1Q9UGL9 99 aa1.65□□□□□ -2.15
SCN1A-220ENST00000641603 FAT2Q9NYQ8 4349 aa1.65□□□□□ -2.15
SCN1A-220ENST00000641603 DYNC2H1Q8NCM8 4307 aaKnown RBP1.64□□□□□ -2.15
SCN1A-220ENST00000641603 VPS13DQ5THJ4 4388 aa1.64□□□□□ -2.15
SCN1A-220ENST00000641603 DNAH10Q8IVF4 4471 aa1.63□□□□□ -2.15
SCN1A-220ENST00000641603 CSMD2Q7Z408 3487 aa1.63□□□□□ -2.15
SCN1A-220ENST00000641603 CSMD1Q96PZ7 3565 aa1.63□□□□□ -2.15
SCN1A-220ENST00000641603 KRTAP19-1Q8IUB9 90 aa1.62□□□□□ -2.15
SCN1A-220ENST00000641603 MT1HP80294 61 aa1.62□□□□□ -2.15
SCN1A-220ENST00000641603 KRTAP10-7P60409 375 aaPredicted RBP1.61□□□□□ -2.15
SCN1A-220ENST00000641603 KRTAP4-1Q9BYQ7 146 aa1.6□□□□□ -2.15
SCN1A-220ENST00000641603 LCE3EQ5T5B0 92 aa1.6□□□□□ -2.15
SCN1A-220ENST00000641603 DNAH9Q9NYC9 4486 aa1.6□□□□□ -2.15
SCN1A-220ENST00000641603 MT1FP04733 61 aa1.59□□□□□ -2.16
SCN1A-220ENST00000641603 MT1XP80297 61 aa1.58□□□□□ -2.16
SCN1A-220ENST00000641603 LCE3DQ9BYE3 92 aa1.58□□□□□ -2.16
SCN1A-220ENST00000641603 MT1LQ93083 61 aa1.57□□□□□ -2.16
SCN1A-220ENST00000641603 MT1GP13640 62 aa1.56□□□□□ -2.16
SCN1A-220ENST00000641603 CUBNO60494 3623 aa1.56□□□□□ -2.16
SCN1A-220ENST00000641603 KRTAP2-3P0C7H8 128 aa1.56□□□□□ -2.16
SCN1A-220ENST00000641603 KRTAP2-4Q9BYR9 128 aa1.56□□□□□ -2.16
SCN1A-220ENST00000641603 KRTAP2-1Q9BYU5 128 aa1.56□□□□□ -2.16
SCN1A-220ENST00000641603 CSMD3Q7Z407 3707 aa1.55□□□□□ -2.16
SCN1A-220ENST00000641603 MT1EP04732 61 aa1.54□□□□□ -2.16
SCN1A-220ENST00000641603 MT1BP07438 61 aa1.53□□□□□ -2.16
SCN1A-220ENST00000641603 DNAH8Q96JB1 4490 aa1.51□□□□□ -2.17
SCN1A-220ENST00000641603 DNAH11Q96DT5 4516 aa1.51□□□□□ -2.17
SCN1A-220ENST00000641603 LCE2CQ5TA81 110 aa1.5□□□□□ -2.17
SCN1A-220ENST00000641603 SACSQ9NZJ4 4579 aa1.5□□□□□ -2.17
SCN1A-220ENST00000641603 DNAH17Q9UFH2 4485 aa1.5□□□□□ -2.17
SCN1A-220ENST00000641603 SVEP1Q4LDE5 3571 aa1.5□□□□□ -2.17
SCN1A-220ENST00000641603 KRTAP4-5Q9BYR2 181 aa1.49□□□□□ -2.17
SCN1A-220ENST00000641603 TNXBP22105 4242 aa1.49□□□□□ -2.17
SCN1A-220ENST00000641603 PKD1P98161 4303 aa1.48□□□□□ -2.17
SCN1A-220ENST00000641603 RYR1P21817 5038 aa1.48□□□□□ -2.17
SCN1A-220ENST00000641603 DYNC1H1Q14204 4646 aaKnown RBP1.47□□□□□ -2.17
SCN1A-220ENST00000641603 MT1AP04731 61 aa1.47□□□□□ -2.17
SCN1A-220ENST00000641603 LCE3BQ5TA77 95 aa1.47□□□□□ -2.17
SCN1A-220ENST00000641603 SPRR2AP35326 72 aa1.46□□□□□ -2.18
SCN1A-220ENST00000641603 LRP1Q07954 4544 aaKnown RBP1.46□□□□□ -2.18
SCN1A-220ENST00000641603 HSPG2P98160 4391 aa1.46□□□□□ -2.18
SCN1A-220ENST00000641603 PCLOQ9Y6V0 5065 aa1.45□□□□□ -2.18
SCN1A-220ENST00000641603 LCE2BO14633 110 aa1.45□□□□□ -2.18
SCN1A-220ENST00000641603 KRTAP9-8Q9BYQ0 159 aa1.45□□□□□ -2.18
SCN1A-220ENST00000641603 SPRR2FQ96RM1 72 aa1.44□□□□□ -2.18
SCN1A-220ENST00000641603 KRTAP19-3Q7Z4W3 81 aa1.44□□□□□ -2.18
SCN1A-220ENST00000641603 SPRR2BP35325 72 aa1.43□□□□□ -2.18
SCN1A-220ENST00000641603 KRTAP9-3Q9BYQ3 159 aa1.43□□□□□ -2.18
SCN1A-220ENST00000641603 PRM1P04553 51 aa1.43□□□□□ -2.18
SCN1A-220ENST00000641603 KRTAP19-2Q3LHN2 52 aa1.42□□□□□ -2.18
SCN1A-220ENST00000641603 APOBP04114 4563 aaKnown RBP1.42□□□□□ -2.18
SCN1A-220ENST00000641603 HYDINQ4G0P3 5121 aa1.42□□□□□ -2.18
SCN1A-220ENST00000641603 SPRR2EP22531 72 aa1.41□□□□□ -2.18
SCN1A-220ENST00000641603 SPRR2DP22532 72 aa1.41□□□□□ -2.18
SCN1A-220ENST00000641603 DNAH5Q8TE73 4624 aa1.41□□□□□ -2.18
SCN1A-220ENST00000641603 LCE2DQ5TA82 110 aaPredicted RBP1.4□□□□□ -2.19
SCN1A-220ENST00000641603 MT1MQ8N339 61 aa1.39□□□□□ -2.19
SCN1A-220ENST00000641603 FAT3Q8TDW7 4589 aa1.38□□□□□ -2.19
SCN1A-220ENST00000641603 PLECQ15149 4684 aaKnown RBP1.37□□□□□ -2.19
SCN1A-220ENST00000641603 STARD9Q9P2P6 4700 aa1.36□□□□□ -2.19
SCN1A-220ENST00000641603 LCE1AQ5T7P2 110 aa1.36□□□□□ -2.19
SCN1A-220ENST00000641603 LRP1BQ9NZR2 4599 aa1.36□□□□□ -2.19
SCN1A-220ENST00000641603 FAT1Q14517 4588 aa1.34□□□□□ -2.2
SCN1A-220ENST00000641603 UBR4Q5T4S7 5183 aa1.34□□□□□ -2.2
SCN1A-220ENST00000641603 KRTAP19-7Q3SYF9 63 aa1.33□□□□□ -2.2
SCN1A-220ENST00000641603 KRTAP19-6Q3LI70 58 aa1.32□□□□□ -2.2
SCN1A-220ENST00000641603 MYCBP2O75592 4640 aa1.32□□□□□ -2.2
SCN1A-220ENST00000641603 EPPK1P58107 5090 aaKnown RBP1.31□□□□□ -2.2
SCN1A-220ENST00000641603 KRTAP4-8A0A0G2JLE6 195 aa1.31□□□□□ -2.2
SCN1A-220ENST00000641603 KRTAP4-8Q9BYQ9 185 aa1.31□□□□□ -2.2
SCN1A-220ENST00000641603 LCE4AQ5TA78 99 aa1.3□□□□□ -2.2
SCN1A-220ENST00000641603 HERC1Q15751 4861 aa1.3□□□□□ -2.2
SCN1A-220ENST00000641603 RYR3Q15413 4870 aa1.3□□□□□ -2.2
SCN1A-220ENST00000641603 DNHD1Q96M86 4753 aa1.29□□□□□ -2.2
SCN1A-220ENST00000641603 KRTAP9-6A8MVA2 160 aa1.27□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms