RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 C1orf64Q8NEQ6 169 aa6.58□□□□□ -1.36
SYNE2-228ENST00000639659 CXCL6P80162 114 aa6.56□□□□□ -1.36
SYNE2-228ENST00000639659 SPRR2EP22531 72 aa6.54□□□□□ -1.36
SYNE2-228ENST00000639659 SPRR2BP35325 72 aa6.54□□□□□ -1.36
SYNE2-228ENST00000639659 SPRR2AP35326 72 aa6.54□□□□□ -1.36
SYNE2-228ENST00000639659 SPRR2FQ96RM1 72 aa6.54□□□□□ -1.36
SYNE2-228ENST00000639659 F8W1H4 67 aa6.53□□□□□ -1.36
SYNE2-228ENST00000639659 PRO0461Q9UI25 63 aa6.51□□□□□ -1.37
SYNE2-228ENST00000639659 CRIPTQ9P021 101 aa6.43□□□□□ -1.38
SYNE2-228ENST00000639659 ETDBQ3ZM63 59 aa6.41□□□□□ -1.38
SYNE2-228ENST00000639659 J3QR89 54 aa6.4□□□□□ -1.38
SYNE2-228ENST00000639659 UBL5Q9BZL1 73 aa6.4□□□□□ -1.38
SYNE2-228ENST00000639659 A0A087WVE0 104 aa6.38□□□□□ -1.39
SYNE2-228ENST00000639659 KRTAP8-1Q8IUC2 63 aa6.38□□□□□ -1.39
SYNE2-228ENST00000639659 KRTAP2-2Q9BYT5 123 aa6.38□□□□□ -1.39
SYNE2-228ENST00000639659 KRTAP2-1Q9BYU5 128 aa6.38□□□□□ -1.39
SYNE2-228ENST00000639659 K7ERU9 68 aa6.36□□□□□ -1.39
SYNE2-228ENST00000639659 PRO2289Q9P1D8 64 aa6.35□□□□□ -1.39
SYNE2-228ENST00000639659 KRTAP4-8Q9BYQ9 185 aa6.33□□□□□ -1.4
SYNE2-228ENST00000639659 SPRR2DP22532 72 aa6.32□□□□□ -1.4
SYNE2-228ENST00000639659 LCE1AQ5T7P2 110 aa6.32□□□□□ -1.4
SYNE2-228ENST00000639659 TP53AIP1Q9HCN2 124 aa6.31□□□□□ -1.4
SYNE2-228ENST00000639659 A8MUN3 132 aa6.3□□□□□ -1.4
SYNE2-228ENST00000639659 MT1XP80297 61 aa6.29□□□□□ -1.4
SYNE2-228ENST00000639659 ACYP1P07311 99 aa6.28□□□□□ -1.4
SYNE2-228ENST00000639659 CYP4F30PQ9H0H9 118 aa6.27□□□□□ -1.41
SYNE2-228ENST00000639659 FAM240AA0A1B0GVK7 77 aa6.26□□□□□ -1.41
SYNE2-228ENST00000639659 PLAC4Q8WY50 150 aa6.26□□□□□ -1.41
SYNE2-228ENST00000639659 NDUFC1O43677 76 aa6.25□□□□□ -1.41
SYNE2-228ENST00000639659 ADM2Q7Z4H4 148 aa6.25□□□□□ -1.41
SYNE2-228ENST00000639659 H3BS24 57 aa6.21□□□□□ -1.42
SYNE2-228ENST00000639659 H0YAA0 97 aa6.2□□□□□ -1.42
SYNE2-228ENST00000639659 KRTAP4-8A0A0G2JLE6 195 aa6.19□□□□□ -1.42
SYNE2-228ENST00000639659 TRAV22A0A0B4J277 110 aa6.17□□□□□ -1.42
SYNE2-228ENST00000639659 LOC101927531A0A1B0GV80 90 aa6.17□□□□□ -1.42
SYNE2-228ENST00000639659 KRTAP12-2P59991 146 aa6.17□□□□□ -1.42
SYNE2-228ENST00000639659 LCE3BQ5TA77 95 aa6.16□□□□□ -1.42
SYNE2-228ENST00000639659 ATP5EP2Q5VTU8 51 aa6.15□□□□□ -1.42
SYNE2-228ENST00000639659 LINC00643Q86TS7 51 aa6.13□□□□□ -1.43
SYNE2-228ENST00000639659 HIST1H4AP62805 103 aaKnown RBP6.12□□□□□ -1.43
SYNE2-228ENST00000639659 R4GN34 69 aa6.12□□□□□ -1.43
SYNE2-228ENST00000639659 M0QZ58 72 aa6.08□□□□□ -1.44
SYNE2-228ENST00000639659 LINC01554Q52M75 96 aa6.07□□□□□ -1.44
SYNE2-228ENST00000639659 H0Y9P7 68 aa6.05□□□□□ -1.44
SYNE2-228ENST00000639659 P0C880 135 aa6.03□□□□□ -1.44
SYNE2-228ENST00000639659 KRTAP10-7P60409 375 aaPredicted RBP6.03□□□□□ -1.44
SYNE2-228ENST00000639659 GPR98Q8WXG9 6306 aa6.02□□□□□ -1.45
SYNE2-228ENST00000639659 MT-ATP8P03928 68 aa6.02□□□□□ -1.45
SYNE2-228ENST00000639659 UQCRQO14949 82 aa6□□□□□ -1.45
SYNE2-228ENST00000639659 C20orf197Q8N268 126 aa6□□□□□ -1.45
SYNE2-228ENST00000639659 ATOX1O00244 68 aa5.99□□□□□ -1.45
SYNE2-228ENST00000639659 SCGB1A1P11684 91 aa5.97□□□□□ -1.45
SYNE2-228ENST00000639659 KRTAP10-12P60413 245 aa5.94□□□□□ -1.46
SYNE2-228ENST00000639659 KRTAP4-12Q9BQ66 201 aa5.94□□□□□ -1.46
SYNE2-228ENST00000639659 LINC00208Q96KT6 92 aa5.92□□□□□ -1.46
SYNE2-228ENST00000639659 KRTAP9-9Q9BYP9 154 aa5.91□□□□□ -1.46
SYNE2-228ENST00000639659 KRTAP9-4Q9BYQ2 154 aa5.91□□□□□ -1.46
SYNE2-228ENST00000639659 OCR1Q9BZK8 76 aa5.89□□□□□ -1.47
SYNE2-228ENST00000639659 MP68P56378 58 aa5.87□□□□□ -1.47
SYNE2-228ENST00000639659 KRTAP4-9Q9BYQ8 210 aa5.87□□□□□ -1.47
SYNE2-228ENST00000639659 SMIM20Q8N5G0 67 aa5.86□□□□□ -1.47
SYNE2-228ENST00000639659 DSTQ03001 7570 aaKnown RBP5.85□□□□□ -1.47
SYNE2-228ENST00000639659 H3BPC8 53 aa5.82□□□□□ -1.48
SYNE2-228ENST00000639659 ANAPC13Q9BS18 74 aa5.82□□□□□ -1.48
SYNE2-228ENST00000639659 TRAV7A0A075B6U4 112 aa5.77□□□□□ -1.49
SYNE2-228ENST00000639659 SERP2Q8N6R1 65 aa5.77□□□□□ -1.49
SYNE2-228ENST00000639659 PCP4P48539 62 aa5.76□□□□□ -1.49
SYNE2-228ENST00000639659 DMAC1Q96GE9 116 aa5.73□□□□□ -1.49
SYNE2-228ENST00000639659 COX7CP15954 63 aa5.72□□□□□ -1.49
SYNE2-228ENST00000639659 LCE5AQ5TCM9 118 aa5.67□□□□□ -1.5
SYNE2-228ENST00000639659 KRTAP4-7Q9BYR0 210 aa5.67□□□□□ -1.5
SYNE2-228ENST00000639659 LCE1DQ5T752 114 aa5.65□□□□□ -1.5
SYNE2-228ENST00000639659 KRTAP19-3Q7Z4W3 81 aa5.64□□□□□ -1.51
SYNE2-228ENST00000639659 CCDC179H3BU77 68 aa5.62□□□□□ -1.51
SYNE2-228ENST00000639659 MT1EP04732 61 aa5.61□□□□□ -1.51
SYNE2-228ENST00000639659 KRTAP19-7Q3SYF9 63 aa5.61□□□□□ -1.51
SYNE2-228ENST00000639659 CAMK2N1Q7Z7J9 78 aa5.61□□□□□ -1.51
SYNE2-228ENST00000639659 ACYP2P14621 99 aa5.59□□□□□ -1.51
SYNE2-228ENST00000639659 MT4P47944 62 aa5.59□□□□□ -1.51
SYNE2-228ENST00000639659 SNURFQ9Y675 71 aa5.59□□□□□ -1.51
SYNE2-228ENST00000639659 CYSTM1Q9H1C7 97 aa5.58□□□□□ -1.52
SYNE2-228ENST00000639659 SPTSSBQ8NFR3 76 aa5.57□□□□□ -1.52
SYNE2-228ENST00000639659 HMCN1Q96RW7 5635 aa5.54□□□□□ -1.52
SYNE2-228ENST00000639659 CHKB-CPT1BH3BT56 60 aa5.52□□□□□ -1.53
SYNE2-228ENST00000639659 KRTAP19-4Q3LI73 84 aa5.52□□□□□ -1.53
SYNE2-228ENST00000639659 TMEM258P61165 79 aa5.51□□□□□ -1.53
SYNE2-228ENST00000639659 SPANXA2-OT1Q8N9U9 137 aa5.5□□□□□ -1.53
SYNE2-228ENST00000639659 AHNAK2Q8IVF2 5795 aa5.5□□□□□ -1.53
SYNE2-228ENST00000639659 H7BZZ5 65 aa5.49□□□□□ -1.53
SYNE2-228ENST00000639659 ATP5EP56381 51 aaPredicted RBP5.49□□□□□ -1.53
SYNE2-228ENST00000639659 LCE4AQ5TA78 99 aa5.49□□□□□ -1.53
SYNE2-228ENST00000639659 KRTAP13-4Q3LI77 160 aa5.47□□□□□ -1.53
SYNE2-228ENST00000639659 KRTAP4-2Q9BYR5 136 aa5.45□□□□□ -1.54
SYNE2-228ENST00000639659 PP632Q6XCG6 107 aa5.44□□□□□ -1.54
SYNE2-228ENST00000639659 MT1GP13640 62 aa5.43□□□□□ -1.54
SYNE2-228ENST00000639659 KRTAP19-5Q3LI72 72 aa5.43□□□□□ -1.54
SYNE2-228ENST00000639659 A0A0D9SG42 100 aa5.41□□□□□ -1.54
SYNE2-228ENST00000639659 KRTAP5-10Q6L8G5 202 aa5.39□□□□□ -1.55
SYNE2-228ENST00000639659 MT1MQ8N339 61 aa5.38□□□□□ -1.55
SYNE2-228ENST00000639659 COA5Q86WW8 74 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms