RNA–Protein interactions for RNA: ENST00000622020.4

NPHP4-211, Transcript of nephrocystin 4, humanhuman

TSL 5 BASIC

Gene NPHP4, Length 3,004 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-211ENST00000622020 HSPG2P98160 4391 aa8.2□□□□□ -1.1
NPHP4-211ENST00000622020 K7ERS5 55 aa8.2□□□□□ -1.1
NPHP4-211ENST00000622020 KRTAP13-4Q3LI77 160 aa8.15□□□□□ -1.1
NPHP4-211ENST00000622020 A0A1B0GVY2 172 aa8.14□□□□□ -1.11
NPHP4-211ENST00000622020 RYR2Q92736 4967 aa8.14□□□□□ -1.11
NPHP4-211ENST00000622020 P0C880 135 aa8.14□□□□□ -1.11
NPHP4-211ENST00000622020 KRTAP10-8P60410 259 aa8.14□□□□□ -1.11
NPHP4-211ENST00000622020 FAT3Q8TDW7 4589 aa8.12□□□□□ -1.11
NPHP4-211ENST00000622020 KRTAP3-3Q9BYR6 98 aa8.11□□□□□ -1.11
NPHP4-211ENST00000622020 KRTAP10-6P60371 365 aaPredicted RBP8.11□□□□□ -1.11
NPHP4-211ENST00000622020 RPL37P61927 97 aaKnown RBP8.06□□□□□ -1.12
NPHP4-211ENST00000622020 LPAP08519 4548 aa8.03□□□□□ -1.12
NPHP4-211ENST00000622020 C10orf95Q9H7T3 257 aa8.03□□□□□ -1.12
NPHP4-211ENST00000622020 S4R3F8 94 aa8.03□□□□□ -1.12
NPHP4-211ENST00000622020 TNXBP22105 4242 aa8.02□□□□□ -1.13
NPHP4-211ENST00000622020 KRTAP3-2Q9BYR7 98 aa8.02□□□□□ -1.13
NPHP4-211ENST00000622020 RYR3Q15413 4870 aa8.01□□□□□ -1.13
NPHP4-211ENST00000622020 XP32Q5T750 250 aa8□□□□□ -1.13
NPHP4-211ENST00000622020 SPINT4Q6UDR6 99 aa8□□□□□ -1.13
NPHP4-211ENST00000622020 TPRXLQ17RH7 258 aa7.97□□□□□ -1.13
NPHP4-211ENST00000622020 Q5VSD8 79 aa7.96□□□□□ -1.13
NPHP4-211ENST00000622020 KRTAP12-2P59991 146 aa7.9□□□□□ -1.14
NPHP4-211ENST00000622020 LRP2P98164 4655 aa7.89□□□□□ -1.15
NPHP4-211ENST00000622020 KRTAP17-1Q9BYP8 105 aa7.87□□□□□ -1.15
NPHP4-211ENST00000622020 KIAA1109Q2LD37 5005 aa7.85□□□□□ -1.15
NPHP4-211ENST00000622020 NDUFAF8A1L188 74 aa7.84□□□□□ -1.16
NPHP4-211ENST00000622020 KRTAP12-1P59990 96 aa7.75□□□□□ -1.17
NPHP4-211ENST00000622020 RYR1P21817 5038 aa7.75□□□□□ -1.17
NPHP4-211ENST00000622020 KRTAP15-1Q3LI76 137 aa7.73□□□□□ -1.17
NPHP4-211ENST00000622020 EPPK1P58107 5090 aaKnown RBP7.71□□□□□ -1.18
NPHP4-211ENST00000622020 MT1HL1P0DM35 61 aa7.69□□□□□ -1.18
NPHP4-211ENST00000622020 ABCA13Q86UQ4 5058 aa7.69□□□□□ -1.18
NPHP4-211ENST00000622020 M0QZ58 72 aa7.6□□□□□ -1.19
NPHP4-211ENST00000622020 R4GN34 69 aa7.54□□□□□ -1.2
NPHP4-211ENST00000622020 LORP23490 312 aaPredicted RBP7.49□□□□□ -1.21
NPHP4-211ENST00000622020 KRTAP4-5Q9BYR2 181 aa7.44□□□□□ -1.22
NPHP4-211ENST00000622020 MUC2Q02817 5179 aa7.42□□□□□ -1.22
NPHP4-211ENST00000622020 BIRC6Q9NR09 4857 aa7.35□□□□□ -1.23
NPHP4-211ENST00000622020 KRTAP4-1Q9BYQ7 146 aa7.33□□□□□ -1.24
NPHP4-211ENST00000622020 MUC17Q685J3 4493 aa7.29□□□□□ -1.24
NPHP4-211ENST00000622020 SEC61BP60468 96 aaKnown RBP7.25□□□□□ -1.25
NPHP4-211ENST00000622020 HERC2O95714 4834 aa7.24□□□□□ -1.25
NPHP4-211ENST00000622020 PLAC4Q8WY50 150 aa7.23□□□□□ -1.25
NPHP4-211ENST00000622020 CAMK2N1Q7Z7J9 78 aa7.22□□□□□ -1.25
NPHP4-211ENST00000622020 J3QL48 77 aa7.17□□□□□ -1.26
NPHP4-211ENST00000622020 A0A0A0MQY5 61 aa7.15□□□□□ -1.26
NPHP4-211ENST00000622020 LUZP6Q538Z0 58 aa7.12□□□□□ -1.27
NPHP4-211ENST00000622020 PCLOQ9Y6V0 5065 aa7.07□□□□□ -1.28
NPHP4-211ENST00000622020 KRTAP19-2Q3LHN2 52 aa7.04□□□□□ -1.28
NPHP4-211ENST00000622020 FAT4Q6V0I7 4981 aa7.01□□□□□ -1.29
NPHP4-211ENST00000622020 HERC1Q15751 4861 aa6.95□□□□□ -1.3
NPHP4-211ENST00000622020 PP632Q6XCG6 107 aa6.9□□□□□ -1.3
NPHP4-211ENST00000622020 FLGP20930 4061 aaPredicted RBP6.89□□□□□ -1.31
NPHP4-211ENST00000622020 TNP1P09430 55 aa6.85□□□□□ -1.31
NPHP4-211ENST00000622020 RNF213Q63HN8 5207 aa6.79□□□□□ -1.32
NPHP4-211ENST00000622020 HMCN2Q8NDA2 5059 aa6.75□□□□□ -1.33
NPHP4-211ENST00000622020 M0R2T5 61 aa6.71□□□□□ -1.34
NPHP4-211ENST00000622020 UBR4Q5T4S7 5183 aa6.6□□□□□ -1.35
NPHP4-211ENST00000622020 LCE2CQ5TA81 110 aa6.6□□□□□ -1.35
NPHP4-211ENST00000622020 KRTAP19-1Q8IUB9 90 aa6.58□□□□□ -1.36
NPHP4-211ENST00000622020 LCE3AQ5TA76 89 aa6.55□□□□□ -1.36
NPHP4-211ENST00000622020 SPRR5A0A1B0GTR4 108 aa6.53□□□□□ -1.36
NPHP4-211ENST00000622020 SPRR2GQ9BYE4 73 aa6.52□□□□□ -1.37
NPHP4-211ENST00000622020 KRTAP10-10P60014 251 aa6.51□□□□□ -1.37
NPHP4-211ENST00000622020 KRTAP23-1A1A580 65 aa6.48□□□□□ -1.37
NPHP4-211ENST00000622020 MT1FP04733 61 aa6.44□□□□□ -1.38
NPHP4-211ENST00000622020 MT1HP80294 61 aa6.44□□□□□ -1.38
NPHP4-211ENST00000622020 MT2AP02795 61 aa6.39□□□□□ -1.39
NPHP4-211ENST00000622020 KRTAP9-8Q9BYQ0 159 aa6.3□□□□□ -1.4
NPHP4-211ENST00000622020 KRTAP10-5P60370 271 aa6.23□□□□□ -1.41
NPHP4-211ENST00000622020 MT1XP80297 61 aa6.21□□□□□ -1.41
NPHP4-211ENST00000622020 MT1BP07438 61 aa6.2□□□□□ -1.42
NPHP4-211ENST00000622020 PRO2289Q9P1D8 64 aa6.2□□□□□ -1.42
NPHP4-211ENST00000622020 KRTAP8-1Q8IUC2 63 aa6.2□□□□□ -1.42
NPHP4-211ENST00000622020 USH2AO75445 5202 aa6.18□□□□□ -1.42
NPHP4-211ENST00000622020 KRTAP12-3P60328 96 aa6.17□□□□□ -1.42
NPHP4-211ENST00000622020 KRTAP10-12P60413 245 aa6.17□□□□□ -1.42
NPHP4-211ENST00000622020 KRTAP10-7P60409 375 aaPredicted RBP6.16□□□□□ -1.42
NPHP4-211ENST00000622020 KMT2DO14686 5537 aa6.16□□□□□ -1.42
NPHP4-211ENST00000622020 KRTAP19-8Q3LI54 63 aa6.15□□□□□ -1.43
NPHP4-211ENST00000622020 INE1O15225 51 aa6.03□□□□□ -1.44
NPHP4-211ENST00000622020 KRTAP9-3Q9BYQ3 159 aa6□□□□□ -1.45
NPHP4-211ENST00000622020 KRTAP19-5Q3LI72 72 aa5.91□□□□□ -1.46
NPHP4-211ENST00000622020 LCE2AQ5TA79 106 aaPredicted RBP5.9□□□□□ -1.47
NPHP4-211ENST00000622020 KRTAP4-8A0A0G2JLE6 195 aa5.85□□□□□ -1.47
NPHP4-211ENST00000622020 KRTAP4-8Q9BYQ9 185 aa5.85□□□□□ -1.47
NPHP4-211ENST00000622020 LCE2BO14633 110 aa5.83□□□□□ -1.48
NPHP4-211ENST00000622020 LCE2DQ5TA82 110 aaPredicted RBP5.82□□□□□ -1.48
NPHP4-211ENST00000622020 LCE3CQ5T5A8 94 aa5.78□□□□□ -1.48
NPHP4-211ENST00000622020 KRTAP4-7Q9BYR0 210 aa5.72□□□□□ -1.49
NPHP4-211ENST00000622020 KRTAP9-6A8MVA2 160 aa5.7□□□□□ -1.5
NPHP4-211ENST00000622020 FSIP2Q5CZC0 6907 aa5.68□□□□□ -1.5
NPHP4-211ENST00000622020 KRTAP19-7Q3SYF9 63 aa5.53□□□□□ -1.52
NPHP4-211ENST00000622020 SSPOA2VEC9 5147 aa5.39□□□□□ -1.55
NPHP4-211ENST00000622020 MT1LQ93083 61 aa5.37□□□□□ -1.55
NPHP4-211ENST00000622020 KRTAP2-3P0C7H8 128 aa5.37□□□□□ -1.55
NPHP4-211ENST00000622020 KRTAP2-4Q9BYR9 128 aa5.37□□□□□ -1.55
NPHP4-211ENST00000622020 KRTAP2-1Q9BYU5 128 aa5.37□□□□□ -1.55
NPHP4-211ENST00000622020 DSTQ03001 7570 aaKnown RBP5.36□□□□□ -1.55
NPHP4-211ENST00000622020 MT1EP04732 61 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 163.6 ms