RNA–Protein interactions for RNA: ENST00000621271.4

CLTCL1-211, Transcript of clathrin heavy chain like 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLTCL1, Length 5,313 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1-211ENST00000621271 KRTAP10-12P60413 245 aa4.41□□□□□ -1.7
CLTCL1-211ENST00000621271 KRTAP3-3Q9BYR6 98 aa4.41□□□□□ -1.7
CLTCL1-211ENST00000621271 PRKDCP78527 4128 aaKnown RBP4.4□□□□□ -1.7
CLTCL1-211ENST00000621271 DNAH1Q9P2D7 4330 aa4.4□□□□□ -1.7
CLTCL1-211ENST00000621271 VPS13CQ709C8 3753 aa4.4□□□□□ -1.71
CLTCL1-211ENST00000621271 BIRC6Q9NR09 4857 aa4.38□□□□□ -1.71
CLTCL1-211ENST00000621271 DNAH10Q8IVF4 4471 aa4.33□□□□□ -1.72
CLTCL1-211ENST00000621271 DNAH5Q8TE73 4624 aa4.33□□□□□ -1.72
CLTCL1-211ENST00000621271 VPS13DQ5THJ4 4388 aa4.29□□□□□ -1.72
CLTCL1-211ENST00000621271 INE1O15225 51 aa4.29□□□□□ -1.72
CLTCL1-211ENST00000621271 KIAA1109Q2LD37 5005 aa4.28□□□□□ -1.72
CLTCL1-211ENST00000621271 DYNC2H1Q8NCM8 4307 aaKnown RBP4.28□□□□□ -1.73
CLTCL1-211ENST00000621271 DYNC1H1Q14204 4646 aaKnown RBP4.26□□□□□ -1.73
CLTCL1-211ENST00000621271 RYR2Q92736 4967 aa4.25□□□□□ -1.73
CLTCL1-211ENST00000621271 RYR3Q15413 4870 aa4.25□□□□□ -1.73
CLTCL1-211ENST00000621271 STARD9Q9P2P6 4700 aa4.24□□□□□ -1.73
CLTCL1-211ENST00000621271 KRTAP12-3P60328 96 aa4.24□□□□□ -1.73
CLTCL1-211ENST00000621271 KRTAP8-1Q8IUC2 63 aa4.23□□□□□ -1.73
CLTCL1-211ENST00000621271 RYR1P21817 5038 aa4.21□□□□□ -1.74
CLTCL1-211ENST00000621271 LORP23490 312 aaPredicted RBP4.21□□□□□ -1.74
CLTCL1-211ENST00000621271 KRTAP17-1Q9BYP8 105 aa4.19□□□□□ -1.74
CLTCL1-211ENST00000621271 DNAH3Q8TD57 4116 aa4.18□□□□□ -1.74
CLTCL1-211ENST00000621271 KRTAP23-1A1A580 65 aa4.18□□□□□ -1.74
CLTCL1-211ENST00000621271 LRP1BQ9NZR2 4599 aa4.17□□□□□ -1.74
CLTCL1-211ENST00000621271 SACSQ9NZJ4 4579 aa4.16□□□□□ -1.74
CLTCL1-211ENST00000621271 DNAH17Q9UFH2 4485 aa4.14□□□□□ -1.75
CLTCL1-211ENST00000621271 HERC2O95714 4834 aa4.13□□□□□ -1.75
CLTCL1-211ENST00000621271 LCE3AQ5TA76 89 aa4.13□□□□□ -1.75
CLTCL1-211ENST00000621271 FAT2Q9NYQ8 4349 aa4.11□□□□□ -1.75
CLTCL1-211ENST00000621271 FAT1Q14517 4588 aa4.08□□□□□ -1.76
CLTCL1-211ENST00000621271 DNAH6Q9C0G6 4158 aa4.08□□□□□ -1.76
CLTCL1-211ENST00000621271 CMYA5Q8N3K9 4069 aa4.06□□□□□ -1.76
CLTCL1-211ENST00000621271 MT1HP80294 61 aa4.06□□□□□ -1.76
CLTCL1-211ENST00000621271 KMT2CQ8NEZ4 4911 aaKnown RBP4.05□□□□□ -1.76
CLTCL1-211ENST00000621271 CSMD3Q7Z407 3707 aa4.04□□□□□ -1.76
CLTCL1-211ENST00000621271 DNAH2Q9P225 4427 aa4.02□□□□□ -1.77
CLTCL1-211ENST00000621271 HYDINQ4G0P3 5121 aa4.01□□□□□ -1.77
CLTCL1-211ENST00000621271 KRTAP10-5P60370 271 aa3.99□□□□□ -1.77
CLTCL1-211ENST00000621271 KRTAP4-1Q9BYQ7 146 aa3.98□□□□□ -1.77
CLTCL1-211ENST00000621271 MT2AP02795 61 aa3.98□□□□□ -1.77
CLTCL1-211ENST00000621271 DNAH7Q8WXX0 4024 aa3.97□□□□□ -1.77
CLTCL1-211ENST00000621271 APOBP04114 4563 aaKnown RBP3.97□□□□□ -1.77
CLTCL1-211ENST00000621271 SPRR2FQ96RM1 72 aa3.97□□□□□ -1.77
CLTCL1-211ENST00000621271 KMT2AQ03164 3969 aa3.95□□□□□ -1.78
CLTCL1-211ENST00000621271 EPPK1P58107 5090 aaKnown RBP3.92□□□□□ -1.78
CLTCL1-211ENST00000621271 DNAH8Q96JB1 4490 aa3.92□□□□□ -1.78
CLTCL1-211ENST00000621271 KRTAP10-7P60409 375 aaPredicted RBP3.91□□□□□ -1.78
CLTCL1-211ENST00000621271 PCLOQ9Y6V0 5065 aa3.91□□□□□ -1.78
CLTCL1-211ENST00000621271 SPRR2GQ9BYE4 73 aa3.87□□□□□ -1.79
CLTCL1-211ENST00000621271 HSPG2P98160 4391 aa3.87□□□□□ -1.79
CLTCL1-211ENST00000621271 HERC1Q15751 4861 aa3.87□□□□□ -1.79
CLTCL1-211ENST00000621271 MT1FP04733 61 aa3.86□□□□□ -1.79
CLTCL1-211ENST00000621271 ABCA13Q86UQ4 5058 aa3.85□□□□□ -1.79
CLTCL1-211ENST00000621271 LYSTQ99698 3801 aa3.83□□□□□ -1.8
CLTCL1-211ENST00000621271 FRAS1Q86XX4 4008 aa3.81□□□□□ -1.8
CLTCL1-211ENST00000621271 VPS13BQ7Z7G8 4022 aa3.8□□□□□ -1.8
CLTCL1-211ENST00000621271 FAT3Q8TDW7 4589 aa3.79□□□□□ -1.8
CLTCL1-211ENST00000621271 MYCBP2O75592 4640 aa3.78□□□□□ -1.8
CLTCL1-211ENST00000621271 LRP1Q07954 4544 aaKnown RBP3.77□□□□□ -1.81
CLTCL1-211ENST00000621271 SPRR2EP22531 72 aa3.76□□□□□ -1.81
CLTCL1-211ENST00000621271 SPRR2BP35325 72 aa3.76□□□□□ -1.81
CLTCL1-211ENST00000621271 SPRR2AP35326 72 aa3.76□□□□□ -1.81
CLTCL1-211ENST00000621271 KRTAP19-5Q3LI72 72 aa3.75□□□□□ -1.81
CLTCL1-211ENST00000621271 PKHD1L1Q86WI1 4243 aa3.75□□□□□ -1.81
CLTCL1-211ENST00000621271 PKHD1P08F94 4074 aa3.74□□□□□ -1.81
CLTCL1-211ENST00000621271 PKD1P98161 4303 aa3.71□□□□□ -1.82
CLTCL1-211ENST00000621271 HECTD4Q9Y4D8 3996 aa3.7□□□□□ -1.82
CLTCL1-211ENST00000621271 KRTAP19-4Q3LI73 84 aa3.68□□□□□ -1.82
CLTCL1-211ENST00000621271 LRP2P98164 4655 aa3.67□□□□□ -1.82
CLTCL1-211ENST00000621271 SPRR2DP22532 72 aa3.65□□□□□ -1.83
CLTCL1-211ENST00000621271 LCE3CQ5T5A8 94 aa3.64□□□□□ -1.83
CLTCL1-211ENST00000621271 KRTAP9-2Q9BYQ4 174 aa3.64□□□□□ -1.83
CLTCL1-211ENST00000621271 LCE2CQ5TA81 110 aa3.6□□□□□ -1.83
CLTCL1-211ENST00000621271 LCE2BO14633 110 aa3.59□□□□□ -1.83
CLTCL1-211ENST00000621271 KRTAP19-8Q3LI54 63 aa3.59□□□□□ -1.83
CLTCL1-211ENST00000621271 LCE2AQ5TA79 106 aaPredicted RBP3.58□□□□□ -1.84
CLTCL1-211ENST00000621271 LCE2DQ5TA82 110 aaPredicted RBP3.58□□□□□ -1.84
CLTCL1-211ENST00000621271 RNF213Q63HN8 5207 aa3.57□□□□□ -1.84
CLTCL1-211ENST00000621271 UBR4Q5T4S7 5183 aa3.57□□□□□ -1.84
CLTCL1-211ENST00000621271 KRTAP9-6A0A140TA67 174 aa3.56□□□□□ -1.84
CLTCL1-211ENST00000621271 HMCN2Q8NDA2 5059 aa3.55□□□□□ -1.84
CLTCL1-211ENST00000621271 KRTAP12-4P60329 112 aa3.55□□□□□ -1.84
CLTCL1-211ENST00000621271 KRTAP19-1Q8IUB9 90 aa3.54□□□□□ -1.84
CLTCL1-211ENST00000621271 SPRR5A0A1B0GTR4 108 aa3.54□□□□□ -1.84
CLTCL1-211ENST00000621271 KRTAP9-8Q9BYQ0 159 aa3.52□□□□□ -1.85
CLTCL1-211ENST00000621271 KRTAP19-2Q3LHN2 52 aa3.49□□□□□ -1.85
CLTCL1-211ENST00000621271 MT1XP80297 61 aa3.47□□□□□ -1.85
CLTCL1-211ENST00000621271 LCE3BQ5TA77 95 aa3.46□□□□□ -1.86
CLTCL1-211ENST00000621271 MT1BP07438 61 aa3.45□□□□□ -1.86
CLTCL1-211ENST00000621271 MT1GP13640 62 aa3.45□□□□□ -1.86
CLTCL1-211ENST00000621271 KRTAP9-3Q9BYQ3 159 aa3.45□□□□□ -1.86
CLTCL1-211ENST00000621271 FAT4Q6V0I7 4981 aa3.43□□□□□ -1.86
CLTCL1-211ENST00000621271 TNXBP22105 4242 aa3.41□□□□□ -1.86
CLTCL1-211ENST00000621271 KRTAP4-8A0A0G2JLE6 195 aa3.38□□□□□ -1.87
CLTCL1-211ENST00000621271 KRTAP4-8Q9BYQ9 185 aa3.38□□□□□ -1.87
CLTCL1-211ENST00000621271 LPAP08519 4548 aa3.35□□□□□ -1.87
CLTCL1-211ENST00000621271 KRTAP19-6Q3LI70 58 aa3.33□□□□□ -1.88
CLTCL1-211ENST00000621271 MUC17Q685J3 4493 aa3.31□□□□□ -1.88
CLTCL1-211ENST00000621271 KRTAP19-3Q7Z4W3 81 aa3.3□□□□□ -1.88
CLTCL1-211ENST00000621271 FLGP20930 4061 aaPredicted RBP3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms