RNA–Protein interactions for RNA: ENST00000620864.1

COLCA1-205, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best) BASIC

Gene COLCA1, Length 8,098 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-205ENST00000620864 CSMD2Q7Z408 3487 aa3.19□□□□□ -1.9
COLCA1-205ENST00000620864 ZFHX4Q86UP3 3567 aa3.19□□□□□ -1.9
COLCA1-205ENST00000620864 HUWE1Q7Z6Z7 4374 aaKnown RBP3.18□□□□□ -1.9
COLCA1-205ENST00000620864 KRTAP12-3P60328 96 aa3.18□□□□□ -1.9
COLCA1-205ENST00000620864 CSMD1Q96PZ7 3565 aa3.16□□□□□ -1.9
COLCA1-205ENST00000620864 SMG1Q96Q15 3661 aaKnown RBP3.15□□□□□ -1.9
COLCA1-205ENST00000620864 KRTAP3-2Q9BYR7 98 aa3.15□□□□□ -1.91
COLCA1-205ENST00000620864 COL7A1Q02388 2944 aa3.12□□□□□ -1.91
COLCA1-205ENST00000620864 BSNQ9UPA5 3926 aa3.09□□□□□ -1.91
COLCA1-205ENST00000620864 KRTAP3-3Q9BYR6 98 aa3.09□□□□□ -1.92
COLCA1-205ENST00000620864 KRTAP9-7A8MTY7 169 aa3.08□□□□□ -1.92
COLCA1-205ENST00000620864 MEGF8Q7Z7M0 2845 aa3.08□□□□□ -1.92
COLCA1-205ENST00000620864 TRRAPQ9Y4A5 3859 aa3.07□□□□□ -1.92
COLCA1-205ENST00000620864 KRTAP10-4P60372 401 aaPredicted RBP3.05□□□□□ -1.92
COLCA1-205ENST00000620864 DNAH3Q8TD57 4116 aa3.05□□□□□ -1.92
COLCA1-205ENST00000620864 VPS13CQ709C8 3753 aa3.04□□□□□ -1.92
COLCA1-205ENST00000620864 LCE3AQ5TA76 89 aa3.03□□□□□ -1.92
COLCA1-205ENST00000620864 KRTAP19-4Q3LI73 84 aa3.03□□□□□ -1.93
COLCA1-205ENST00000620864 KRTAP10-5P60370 271 aa3.02□□□□□ -1.93
COLCA1-205ENST00000620864 LCE2CQ5TA81 110 aa3.01□□□□□ -1.93
COLCA1-205ENST00000620864 DNAH9Q9NYC9 4486 aa3.01□□□□□ -1.93
COLCA1-205ENST00000620864 LCE2BO14633 110 aa3.01□□□□□ -1.93
COLCA1-205ENST00000620864 DNAH1Q9P2D7 4330 aa3□□□□□ -1.93
COLCA1-205ENST00000620864 DNAH7Q8WXX0 4024 aa2.98□□□□□ -1.93
COLCA1-205ENST00000620864 DNAH6Q9C0G6 4158 aa2.97□□□□□ -1.93
COLCA1-205ENST00000620864 LCE2DQ5TA82 110 aaPredicted RBP2.97□□□□□ -1.93
COLCA1-205ENST00000620864 SVEP1Q4LDE5 3571 aa2.95□□□□□ -1.94
COLCA1-205ENST00000620864 HYDINQ4G0P3 5121 aa2.92□□□□□ -1.94
COLCA1-205ENST00000620864 MT1HP80294 61 aa2.92□□□□□ -1.94
COLCA1-205ENST00000620864 HECTD4Q9Y4D8 3996 aa2.91□□□□□ -1.94
COLCA1-205ENST00000620864 PRKDCP78527 4128 aaKnown RBP2.9□□□□□ -1.95
COLCA1-205ENST00000620864 CUBNO60494 3623 aa2.9□□□□□ -1.95
COLCA1-205ENST00000620864 KRTAP12-4P60329 112 aa2.89□□□□□ -1.95
COLCA1-205ENST00000620864 LYSTQ99698 3801 aa2.89□□□□□ -1.95
COLCA1-205ENST00000620864 ANK2Q01484 3957 aa2.89□□□□□ -1.95
COLCA1-205ENST00000620864 MT4P47944 62 aa2.87□□□□□ -1.95
COLCA1-205ENST00000620864 DNHD1Q96M86 4753 aa2.87□□□□□ -1.95
COLCA1-205ENST00000620864 ZNF469Q96JG9 3925 aaPredicted RBP2.87□□□□□ -1.95
COLCA1-205ENST00000620864 KRTAP4-1Q9BYQ7 146 aa2.85□□□□□ -1.95
COLCA1-205ENST00000620864 LCE3BQ5TA77 95 aa2.83□□□□□ -1.96
COLCA1-205ENST00000620864 DNAH11Q96DT5 4516 aa2.82□□□□□ -1.96
COLCA1-205ENST00000620864 FAT2Q9NYQ8 4349 aa2.81□□□□□ -1.96
COLCA1-205ENST00000620864 DNAH5Q8TE73 4624 aa2.8□□□□□ -1.96
COLCA1-205ENST00000620864 KRTAP2-3P0C7H8 128 aa2.79□□□□□ -1.96
COLCA1-205ENST00000620864 KRTAP2-4Q9BYR9 128 aa2.79□□□□□ -1.96
COLCA1-205ENST00000620864 MT2AP02795 61 aa2.78□□□□□ -1.97
COLCA1-205ENST00000620864 LCE3CQ5T5A8 94 aa2.77□□□□□ -1.97
COLCA1-205ENST00000620864 PLECQ15149 4684 aaKnown RBP2.76□□□□□ -1.97
COLCA1-205ENST00000620864 DNAH10Q8IVF4 4471 aa2.75□□□□□ -1.97
COLCA1-205ENST00000620864 CSMD3Q7Z407 3707 aa2.74□□□□□ -1.97
COLCA1-205ENST00000620864 UBR4Q5T4S7 5183 aa2.74□□□□□ -1.97
COLCA1-205ENST00000620864 KRTAP19-1Q8IUB9 90 aa2.74□□□□□ -1.97
COLCA1-205ENST00000620864 SPRR2GQ9BYE4 73 aa2.74□□□□□ -1.97
COLCA1-205ENST00000620864 LRP1BQ9NZR2 4599 aa2.73□□□□□ -1.97
COLCA1-205ENST00000620864 DNAH17Q9UFH2 4485 aa2.72□□□□□ -1.97
COLCA1-205ENST00000620864 MT1FP04733 61 aa2.72□□□□□ -1.97
COLCA1-205ENST00000620864 VPS13DQ5THJ4 4388 aa2.72□□□□□ -1.97
COLCA1-205ENST00000620864 DNAH2Q9P225 4427 aa2.71□□□□□ -1.97
COLCA1-205ENST00000620864 DYNC1H1Q14204 4646 aaKnown RBP2.7□□□□□ -1.98
COLCA1-205ENST00000620864 DYNC2H1Q8NCM8 4307 aaKnown RBP2.69□□□□□ -1.98
COLCA1-205ENST00000620864 FRAS1Q86XX4 4008 aa2.68□□□□□ -1.98
COLCA1-205ENST00000620864 KMT2AQ03164 3969 aa2.68□□□□□ -1.98
COLCA1-205ENST00000620864 STARD9Q9P2P6 4700 aa2.67□□□□□ -1.98
COLCA1-205ENST00000620864 FLGP20930 4061 aaPredicted RBP2.66□□□□□ -1.98
COLCA1-205ENST00000620864 SACSQ9NZJ4 4579 aa2.65□□□□□ -1.99
COLCA1-205ENST00000620864 KRTAP19-5Q3LI72 72 aa2.65□□□□□ -1.99
COLCA1-205ENST00000620864 VPS13BQ7Z7G8 4022 aa2.64□□□□□ -1.99
COLCA1-205ENST00000620864 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.64□□□□□ -1.99
COLCA1-205ENST00000620864 PKHD1P08F94 4074 aa2.63□□□□□ -1.99
COLCA1-205ENST00000620864 MT3P25713 68 aa2.63□□□□□ -1.99
COLCA1-205ENST00000620864 FAT1Q14517 4588 aa2.62□□□□□ -1.99
COLCA1-205ENST00000620864 KRTAP2-2Q9BYT5 123 aa2.59□□□□□ -2
COLCA1-205ENST00000620864 KRTAP2-1Q9BYU5 128 aa2.59□□□□□ -2
COLCA1-205ENST00000620864 KRTAP19-6Q3LI70 58 aa2.58□□□□□ -2
COLCA1-205ENST00000620864 PKHD1L1Q86WI1 4243 aa2.57□□□□□ -2
COLCA1-205ENST00000620864 FAT3Q8TDW7 4589 aa2.57□□□□□ -2
COLCA1-205ENST00000620864 KRTAP4-7Q9BYR0 210 aa2.56□□□□□ -2
COLCA1-205ENST00000620864 PKD1P98161 4303 aa2.56□□□□□ -2
COLCA1-205ENST00000620864 RYR2Q92736 4967 aa2.55□□□□□ -2
COLCA1-205ENST00000620864 DNAH8Q96JB1 4490 aa2.54□□□□□ -2
COLCA1-205ENST00000620864 HSPG2P98160 4391 aa2.54□□□□□ -2
COLCA1-205ENST00000620864 RYR3Q15413 4870 aa2.54□□□□□ -2
COLCA1-205ENST00000620864 BIRC6Q9NR09 4857 aa2.53□□□□□ -2
COLCA1-205ENST00000620864 LCE5AQ5TCM9 118 aa2.53□□□□□ -2
COLCA1-205ENST00000620864 LCE1CQ5T751 118 aa2.53□□□□□ -2
COLCA1-205ENST00000620864 LCE1EQ5T753 118 aa2.53□□□□□ -2
COLCA1-205ENST00000620864 LCE1FQ5T754 118 aa2.53□□□□□ -2
COLCA1-205ENST00000620864 LCE1AQ5T7P2 110 aa2.53□□□□□ -2
COLCA1-205ENST00000620864 KRTAP9-9Q9BYP9 154 aa2.52□□□□□ -2.01
COLCA1-205ENST00000620864 EPPK1P58107 5090 aaKnown RBP2.51□□□□□ -2.01
COLCA1-205ENST00000620864 LCE3DQ9BYE3 92 aa2.5□□□□□ -2.01
COLCA1-205ENST00000620864 KRTAP6-3Q3LI67 103 aa2.5□□□□□ -2.01
COLCA1-205ENST00000620864 LCE3EQ5T5B0 92 aa2.5□□□□□ -2.01
COLCA1-205ENST00000620864 APOBP04114 4563 aaKnown RBP2.49□□□□□ -2.01
COLCA1-205ENST00000620864 HERC2O95714 4834 aa2.48□□□□□ -2.01
COLCA1-205ENST00000620864 KMT2CQ8NEZ4 4911 aaKnown RBP2.48□□□□□ -2.01
COLCA1-205ENST00000620864 KRTAP19-8Q3LI54 63 aa2.48□□□□□ -2.01
COLCA1-205ENST00000620864 KRTAP4-9Q9BYQ8 210 aa2.47□□□□□ -2.01
COLCA1-205ENST00000620864 LCE1BQ5T7P3 118 aa2.46□□□□□ -2.02
COLCA1-205ENST00000620864 KIAA1109Q2LD37 5005 aa2.46□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms