RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 A8MUU9 505 aa7.82□□□□□ -1.16
SHROOM1-208ENST00000617339 KRTAP17-1Q9BYP8 105 aa7.82□□□□□ -1.16
SHROOM1-208ENST00000617339 A0A1B0GU33 70 aa7.8□□□□□ -1.16
SHROOM1-208ENST00000617339 A0A0D9SG42 100 aa7.79□□□□□ -1.16
SHROOM1-208ENST00000617339 RYR1P21817 5038 aa7.78□□□□□ -1.16
SHROOM1-208ENST00000617339 EPPK1P58107 5090 aaKnown RBP7.76□□□□□ -1.17
SHROOM1-208ENST00000617339 HSPG2P98160 4391 aa7.74□□□□□ -1.17
SHROOM1-208ENST00000617339 PKHD1L1Q86WI1 4243 aa7.73□□□□□ -1.17
SHROOM1-208ENST00000617339 H1FX-AS1Q4G0G2 97 aa7.7□□□□□ -1.18
SHROOM1-208ENST00000617339 NDUFAF8A1L188 74 aa7.69□□□□□ -1.18
SHROOM1-208ENST00000617339 COX6B2Q6YFQ2 88 aa7.66□□□□□ -1.18
SHROOM1-208ENST00000617339 RPS29P62273 56 aaKnown RBP7.63□□□□□ -1.19
SHROOM1-208ENST00000617339 KRTAP4-5Q9BYR2 181 aa7.63□□□□□ -1.19
SHROOM1-208ENST00000617339 C20orf166-AS1Q96NR2 134 aa7.63□□□□□ -1.19
SHROOM1-208ENST00000617339 P0C880 135 aa7.62□□□□□ -1.19
SHROOM1-208ENST00000617339 KRTAP10-8P60410 259 aa7.61□□□□□ -1.19
SHROOM1-208ENST00000617339 KRTAP3-1Q9BYR8 98 aa7.6□□□□□ -1.19
SHROOM1-208ENST00000617339 LRP2P98164 4655 aa7.59□□□□□ -1.19
SHROOM1-208ENST00000617339 LPAP08519 4548 aa7.56□□□□□ -1.2
SHROOM1-208ENST00000617339 XP32Q5T750 250 aa7.54□□□□□ -1.2
SHROOM1-208ENST00000617339 C10orf95Q9H7T3 257 aa7.54□□□□□ -1.2
SHROOM1-208ENST00000617339 TNXBP22105 4242 aa7.53□□□□□ -1.2
SHROOM1-208ENST00000617339 ABCA13Q86UQ4 5058 aa7.52□□□□□ -1.21
SHROOM1-208ENST00000617339 RPL37P61927 97 aaKnown RBP7.5□□□□□ -1.21
SHROOM1-208ENST00000617339 MT1HL1P0DM35 61 aa7.49□□□□□ -1.21
SHROOM1-208ENST00000617339 TPRXLQ17RH7 258 aa7.45□□□□□ -1.22
SHROOM1-208ENST00000617339 A0A0A0MQY5 61 aa7.44□□□□□ -1.22
SHROOM1-208ENST00000617339 S4R3F8 94 aa7.43□□□□□ -1.22
SHROOM1-208ENST00000617339 SEC61BP60468 96 aaKnown RBP7.41□□□□□ -1.22
SHROOM1-208ENST00000617339 KRTAP13-4Q3LI77 160 aa7.4□□□□□ -1.22
SHROOM1-208ENST00000617339 MUC2Q02817 5179 aa7.35□□□□□ -1.23
SHROOM1-208ENST00000617339 HERC2O95714 4834 aa7.35□□□□□ -1.23
SHROOM1-208ENST00000617339 M0R2T5 61 aa7.33□□□□□ -1.24
SHROOM1-208ENST00000617339 KRTAP10-6P60371 365 aaPredicted RBP7.3□□□□□ -1.24
SHROOM1-208ENST00000617339 LUZP6Q538Z0 58 aa7.25□□□□□ -1.25
SHROOM1-208ENST00000617339 KRTAP3-3Q9BYR6 98 aa7.22□□□□□ -1.25
SHROOM1-208ENST00000617339 KRTAP12-2P59991 146 aa7.2□□□□□ -1.26
SHROOM1-208ENST00000617339 KRTAP15-1Q3LI76 137 aa7.2□□□□□ -1.26
SHROOM1-208ENST00000617339 KRTAP3-2Q9BYR7 98 aa7.2□□□□□ -1.26
SHROOM1-208ENST00000617339 HERC1Q15751 4861 aa7.19□□□□□ -1.26
SHROOM1-208ENST00000617339 R4GN34 69 aa7.15□□□□□ -1.27
SHROOM1-208ENST00000617339 M0QZ58 72 aa7.12□□□□□ -1.27
SHROOM1-208ENST00000617339 KRTAP4-1Q9BYQ7 146 aa7.05□□□□□ -1.28
SHROOM1-208ENST00000617339 KRTAP12-1P59990 96 aa7.05□□□□□ -1.28
SHROOM1-208ENST00000617339 PCLOQ9Y6V0 5065 aa7.02□□□□□ -1.29
SHROOM1-208ENST00000617339 RNF213Q63HN8 5207 aa7.01□□□□□ -1.29
SHROOM1-208ENST00000617339 FAT4Q6V0I7 4981 aa6.99□□□□□ -1.29
SHROOM1-208ENST00000617339 CAMK2N1Q7Z7J9 78 aa6.97□□□□□ -1.29
SHROOM1-208ENST00000617339 BIRC6Q9NR09 4857 aa6.94□□□□□ -1.3
SHROOM1-208ENST00000617339 LORP23490 312 aaPredicted RBP6.88□□□□□ -1.31
SHROOM1-208ENST00000617339 PLAC4Q8WY50 150 aa6.88□□□□□ -1.31
SHROOM1-208ENST00000617339 UBR4Q5T4S7 5183 aa6.86□□□□□ -1.31
SHROOM1-208ENST00000617339 MUC17Q685J3 4493 aa6.81□□□□□ -1.32
SHROOM1-208ENST00000617339 KRTAP10-10P60014 251 aa6.7□□□□□ -1.34
SHROOM1-208ENST00000617339 HMCN2Q8NDA2 5059 aa6.7□□□□□ -1.34
SHROOM1-208ENST00000617339 KRTAP19-2Q3LHN2 52 aa6.56□□□□□ -1.36
SHROOM1-208ENST00000617339 FLGP20930 4061 aaPredicted RBP6.49□□□□□ -1.37
SHROOM1-208ENST00000617339 LCE2CQ5TA81 110 aa6.38□□□□□ -1.39
SHROOM1-208ENST00000617339 PP632Q6XCG6 107 aa6.34□□□□□ -1.39
SHROOM1-208ENST00000617339 MT1HP80294 61 aa6.31□□□□□ -1.4
SHROOM1-208ENST00000617339 TNP1P09430 55 aa6.31□□□□□ -1.4
SHROOM1-208ENST00000617339 FSIP2Q5CZC0 6907 aa6.24□□□□□ -1.41
SHROOM1-208ENST00000617339 USH2AO75445 5202 aa6.22□□□□□ -1.41
SHROOM1-208ENST00000617339 MT1FP04733 61 aa6.21□□□□□ -1.41
SHROOM1-208ENST00000617339 MT2AP02795 61 aa6.17□□□□□ -1.42
SHROOM1-208ENST00000617339 KRTAP19-1Q8IUB9 90 aa6.15□□□□□ -1.42
SHROOM1-208ENST00000617339 KRTAP9-8Q9BYQ0 159 aa6.08□□□□□ -1.44
SHROOM1-208ENST00000617339 SPRR2GQ9BYE4 73 aa6.02□□□□□ -1.45
SHROOM1-208ENST00000617339 SPRR5A0A1B0GTR4 108 aa5.99□□□□□ -1.45
SHROOM1-208ENST00000617339 LCE2DQ5TA82 110 aaPredicted RBP5.98□□□□□ -1.45
SHROOM1-208ENST00000617339 PRO2289Q9P1D8 64 aa5.96□□□□□ -1.46
SHROOM1-208ENST00000617339 KMT2DO14686 5537 aa5.94□□□□□ -1.46
SHROOM1-208ENST00000617339 LCE3AQ5TA76 89 aa5.91□□□□□ -1.46
SHROOM1-208ENST00000617339 MT1BP07438 61 aa5.85□□□□□ -1.47
SHROOM1-208ENST00000617339 KRTAP23-1A1A580 65 aa5.84□□□□□ -1.47
SHROOM1-208ENST00000617339 KRTAP9-3Q9BYQ3 159 aa5.8□□□□□ -1.48
SHROOM1-208ENST00000617339 MT1XP80297 61 aa5.77□□□□□ -1.49
SHROOM1-208ENST00000617339 KRTAP10-5P60370 271 aa5.77□□□□□ -1.49
SHROOM1-208ENST00000617339 KRTAP10-7P60409 375 aaPredicted RBP5.76□□□□□ -1.49
SHROOM1-208ENST00000617339 KRTAP10-12P60413 245 aa5.76□□□□□ -1.49
SHROOM1-208ENST00000617339 LCE2BO14633 110 aa5.74□□□□□ -1.49
SHROOM1-208ENST00000617339 INE1O15225 51 aa5.73□□□□□ -1.49
SHROOM1-208ENST00000617339 KRTAP19-8Q3LI54 63 aa5.73□□□□□ -1.49
SHROOM1-208ENST00000617339 KRTAP4-8A0A0G2JLE6 195 aa5.62□□□□□ -1.51
SHROOM1-208ENST00000617339 KRTAP4-8Q9BYQ9 185 aa5.62□□□□□ -1.51
SHROOM1-208ENST00000617339 KRTAP12-3P60328 96 aa5.59□□□□□ -1.51
SHROOM1-208ENST00000617339 LCE2AQ5TA79 106 aaPredicted RBP5.59□□□□□ -1.52
SHROOM1-208ENST00000617339 KRTAP8-1Q8IUC2 63 aa5.52□□□□□ -1.53
SHROOM1-208ENST00000617339 SSPOA2VEC9 5147 aa5.49□□□□□ -1.53
SHROOM1-208ENST00000617339 KRTAP19-5Q3LI72 72 aa5.47□□□□□ -1.53
SHROOM1-208ENST00000617339 CRCT1Q9UGL9 99 aa5.42□□□□□ -1.54
SHROOM1-208ENST00000617339 DSTQ03001 7570 aaKnown RBP5.4□□□□□ -1.55
SHROOM1-208ENST00000617339 KRTAP4-7Q9BYR0 210 aa5.33□□□□□ -1.56
SHROOM1-208ENST00000617339 MUC12Q9UKN1 5478 aa5.32□□□□□ -1.56
SHROOM1-208ENST00000617339 FCGBPQ9Y6R7 5405 aaPredicted RBP5.25□□□□□ -1.57
SHROOM1-208ENST00000617339 OBSCNQ5VST9 7968 aa5.23□□□□□ -1.57
SHROOM1-208ENST00000617339 SPRR2FQ96RM1 72 aa5.21□□□□□ -1.58
SHROOM1-208ENST00000617339 LCE3CQ5T5A8 94 aa5.17□□□□□ -1.58
SHROOM1-208ENST00000617339 SYNE1Q8NF91 8797 aaKnown RBP5.16□□□□□ -1.58
SHROOM1-208ENST00000617339 KRTAP19-7Q3SYF9 63 aa5.13□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms