RNA–Protein interactions for RNA: ENST00000590574.5

SMARCA4-215, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SMARCA4, Length 5,282 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-215ENST00000590574 PP632Q6XCG6 107 aa8.32□□□□□ -1.08
SMARCA4-215ENST00000590574 DNAH8Q96JB1 4490 aa8.3□□□□□ -1.08
SMARCA4-215ENST00000590574 KRTAP3-3Q9BYR6 98 aa8.3□□□□□ -1.08
SMARCA4-215ENST00000590574 DNAH2Q9P225 4427 aa8.25□□□□□ -1.09
SMARCA4-215ENST00000590574 KRTAP3-2Q9BYR7 98 aa8.25□□□□□ -1.09
SMARCA4-215ENST00000590574 DNAH5Q8TE73 4624 aa8.21□□□□□ -1.09
SMARCA4-215ENST00000590574 LYSTQ99698 3801 aa8.2□□□□□ -1.1
SMARCA4-215ENST00000590574 MT1HL1P0DM35 61 aa8.17□□□□□ -1.1
SMARCA4-215ENST00000590574 KMT2AQ03164 3969 aa8.16□□□□□ -1.1
SMARCA4-215ENST00000590574 FRAS1Q86XX4 4008 aa8.13□□□□□ -1.11
SMARCA4-215ENST00000590574 DYNC2H1Q8NCM8 4307 aaKnown RBP8.12□□□□□ -1.11
SMARCA4-215ENST00000590574 PRKDCP78527 4128 aaKnown RBP8.12□□□□□ -1.11
SMARCA4-215ENST00000590574 LRP1BQ9NZR2 4599 aa8.07□□□□□ -1.12
SMARCA4-215ENST00000590574 DNAH7Q8WXX0 4024 aa8.04□□□□□ -1.12
SMARCA4-215ENST00000590574 HECTD4Q9Y4D8 3996 aa7.99□□□□□ -1.13
SMARCA4-215ENST00000590574 KRTAP10-10P60014 251 aa7.96□□□□□ -1.13
SMARCA4-215ENST00000590574 DYNC1H1Q14204 4646 aaKnown RBP7.95□□□□□ -1.14
SMARCA4-215ENST00000590574 VPS13BQ7Z7G8 4022 aa7.93□□□□□ -1.14
SMARCA4-215ENST00000590574 DNHD1Q96M86 4753 aa7.93□□□□□ -1.14
SMARCA4-215ENST00000590574 SACSQ9NZJ4 4579 aa7.91□□□□□ -1.14
SMARCA4-215ENST00000590574 FAT1Q14517 4588 aa7.9□□□□□ -1.14
SMARCA4-215ENST00000590574 DNAH6Q9C0G6 4158 aa7.89□□□□□ -1.15
SMARCA4-215ENST00000590574 KRTAP15-1Q3LI76 137 aa7.89□□□□□ -1.15
SMARCA4-215ENST00000590574 KRTAP4-5Q9BYR2 181 aa7.85□□□□□ -1.15
SMARCA4-215ENST00000590574 FAT2Q9NYQ8 4349 aa7.82□□□□□ -1.16
SMARCA4-215ENST00000590574 LORP23490 312 aaPredicted RBP7.71□□□□□ -1.18
SMARCA4-215ENST00000590574 PRO2289Q9P1D8 64 aa7.61□□□□□ -1.19
SMARCA4-215ENST00000590574 HYDINQ4G0P3 5121 aa7.59□□□□□ -1.19
SMARCA4-215ENST00000590574 APOBP04114 4563 aaKnown RBP7.55□□□□□ -1.2
SMARCA4-215ENST00000590574 KRTAP4-1Q9BYQ7 146 aa7.48□□□□□ -1.21
SMARCA4-215ENST00000590574 MYCBP2O75592 4640 aa7.45□□□□□ -1.22
SMARCA4-215ENST00000590574 PKD1P98161 4303 aa7.43□□□□□ -1.22
SMARCA4-215ENST00000590574 FAT3Q8TDW7 4589 aa7.42□□□□□ -1.22
SMARCA4-215ENST00000590574 PKHD1P08F94 4074 aa7.42□□□□□ -1.22
SMARCA4-215ENST00000590574 RYR1P21817 5038 aa7.42□□□□□ -1.22
SMARCA4-215ENST00000590574 LRP1Q07954 4544 aaKnown RBP7.41□□□□□ -1.22
SMARCA4-215ENST00000590574 KRTAP17-1Q9BYP8 105 aa7.36□□□□□ -1.23
SMARCA4-215ENST00000590574 KRTAP23-1A1A580 65 aa7.29□□□□□ -1.24
SMARCA4-215ENST00000590574 RYR2Q92736 4967 aa7.28□□□□□ -1.24
SMARCA4-215ENST00000590574 LCE3AQ5TA76 89 aa7.24□□□□□ -1.25
SMARCA4-215ENST00000590574 PKHD1L1Q86WI1 4243 aa7.22□□□□□ -1.25
SMARCA4-215ENST00000590574 RYR3Q15413 4870 aa7.22□□□□□ -1.25
SMARCA4-215ENST00000590574 KIAA1109Q2LD37 5005 aa7.22□□□□□ -1.25
SMARCA4-215ENST00000590574 KRTAP10-12P60413 245 aa7.21□□□□□ -1.26
SMARCA4-215ENST00000590574 HSPG2P98160 4391 aa7.18□□□□□ -1.26
SMARCA4-215ENST00000590574 KRTAP12-3P60328 96 aa7.09□□□□□ -1.27
SMARCA4-215ENST00000590574 TNXBP22105 4242 aa7.08□□□□□ -1.28
SMARCA4-215ENST00000590574 LRP2P98164 4655 aa7.03□□□□□ -1.28
SMARCA4-215ENST00000590574 MT1HP80294 61 aa7□□□□□ -1.29
SMARCA4-215ENST00000590574 SPRR2GQ9BYE4 73 aa6.99□□□□□ -1.29
SMARCA4-215ENST00000590574 KMT2CQ8NEZ4 4911 aaKnown RBP6.97□□□□□ -1.29
SMARCA4-215ENST00000590574 INE1O15225 51 aa6.94□□□□□ -1.3
SMARCA4-215ENST00000590574 LPAP08519 4548 aa6.94□□□□□ -1.3
SMARCA4-215ENST00000590574 MT2AP02795 61 aa6.92□□□□□ -1.3
SMARCA4-215ENST00000590574 MT1FP04733 61 aa6.86□□□□□ -1.31
SMARCA4-215ENST00000590574 KRTAP19-1Q8IUB9 90 aa6.73□□□□□ -1.33
SMARCA4-215ENST00000590574 HERC2O95714 4834 aa6.71□□□□□ -1.33
SMARCA4-215ENST00000590574 KRTAP8-1Q8IUC2 63 aa6.62□□□□□ -1.35
SMARCA4-215ENST00000590574 KRTAP19-2Q3LHN2 52 aa6.6□□□□□ -1.35
SMARCA4-215ENST00000590574 CRCT1Q9UGL9 99 aa6.57□□□□□ -1.36
SMARCA4-215ENST00000590574 LCE2CQ5TA81 110 aa6.56□□□□□ -1.36
SMARCA4-215ENST00000590574 KRTAP19-8Q3LI54 63 aa6.55□□□□□ -1.36
SMARCA4-215ENST00000590574 EPPK1P58107 5090 aaKnown RBP6.54□□□□□ -1.36
SMARCA4-215ENST00000590574 KRTAP19-5Q3LI72 72 aa6.52□□□□□ -1.37
SMARCA4-215ENST00000590574 KRTAP10-7P60409 375 aaPredicted RBP6.5□□□□□ -1.37
SMARCA4-215ENST00000590574 MT1XP80297 61 aa6.48□□□□□ -1.37
SMARCA4-215ENST00000590574 SPRR5A0A1B0GTR4 108 aa6.47□□□□□ -1.37
SMARCA4-215ENST00000590574 KRTAP9-8Q9BYQ0 159 aa6.47□□□□□ -1.37
SMARCA4-215ENST00000590574 BIRC6Q9NR09 4857 aa6.45□□□□□ -1.38
SMARCA4-215ENST00000590574 KRTAP10-5P60370 271 aa6.45□□□□□ -1.38
SMARCA4-215ENST00000590574 FLGP20930 4061 aaPredicted RBP6.44□□□□□ -1.38
SMARCA4-215ENST00000590574 HERC1Q15751 4861 aa6.44□□□□□ -1.38
SMARCA4-215ENST00000590574 MT1BP07438 61 aa6.43□□□□□ -1.38
SMARCA4-215ENST00000590574 MUC17Q685J3 4493 aa6.43□□□□□ -1.38
SMARCA4-215ENST00000590574 ABCA13Q86UQ4 5058 aa6.43□□□□□ -1.38
SMARCA4-215ENST00000590574 LCE3CQ5T5A8 94 aa6.41□□□□□ -1.38
SMARCA4-215ENST00000590574 KRTAP9-3Q9BYQ3 159 aa6.25□□□□□ -1.41
SMARCA4-215ENST00000590574 PCLOQ9Y6V0 5065 aa6.21□□□□□ -1.41
SMARCA4-215ENST00000590574 KRTAP4-8A0A0G2JLE6 195 aa6.11□□□□□ -1.43
SMARCA4-215ENST00000590574 KRTAP4-8Q9BYQ9 185 aa6.11□□□□□ -1.43
SMARCA4-215ENST00000590574 MUC2Q02817 5179 aa6.06□□□□□ -1.44
SMARCA4-215ENST00000590574 KRTAP19-4Q3LI73 84 aa6.01□□□□□ -1.45
SMARCA4-215ENST00000590574 HMCN2Q8NDA2 5059 aa5.98□□□□□ -1.45
SMARCA4-215ENST00000590574 LCE2BO14633 110 aa5.98□□□□□ -1.45
SMARCA4-215ENST00000590574 FAT4Q6V0I7 4981 aa5.96□□□□□ -1.45
SMARCA4-215ENST00000590574 RNF213Q63HN8 5207 aa5.96□□□□□ -1.46
SMARCA4-215ENST00000590574 SPRR2FQ96RM1 72 aa5.91□□□□□ -1.46
SMARCA4-215ENST00000590574 KRTAP4-7Q9BYR0 210 aa5.85□□□□□ -1.47
SMARCA4-215ENST00000590574 MT1GP13640 62 aa5.81□□□□□ -1.48
SMARCA4-215ENST00000590574 MT1LQ93083 61 aa5.74□□□□□ -1.49
SMARCA4-215ENST00000590574 UBR4Q5T4S7 5183 aa5.74□□□□□ -1.49
SMARCA4-215ENST00000590574 MT1EP04732 61 aa5.7□□□□□ -1.5
SMARCA4-215ENST00000590574 LCE3BQ5TA77 95 aa5.65□□□□□ -1.5
SMARCA4-215ENST00000590574 KRTAP12-4P60329 112 aa5.62□□□□□ -1.51
SMARCA4-215ENST00000590574 KRTAP19-7Q3SYF9 63 aa5.56□□□□□ -1.52
SMARCA4-215ENST00000590574 KRTAP19-3Q7Z4W3 81 aa5.55□□□□□ -1.52
SMARCA4-215ENST00000590574 LCE2AQ5TA79 106 aaPredicted RBP5.54□□□□□ -1.52
SMARCA4-215ENST00000590574 LOC100996750A0A140TA64 210 aa5.49□□□□□ -1.53
SMARCA4-215ENST00000590574 KRTAP4-3Q9BYR4 195 aa5.46□□□□□ -1.54
SMARCA4-215ENST00000590574 KRTAP19-6Q3LI70 58 aa5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 276.6 ms