RNA–Protein interactions for RNA: ENST00000584897.5

SMCHD1-211, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,143 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-211ENST00000584897 LINC00575Q6W349 94 aa1.06□□□□□ -2.24
SMCHD1-211ENST00000584897 SNHG12Q9BXW3 62 aa1.06□□□□□ -2.24
SMCHD1-211ENST00000584897 LOC110117498A0A087WWA1 95 aa1.06□□□□□ -2.24
SMCHD1-211ENST00000584897 KRTAP10-4P60372 401 aaPredicted RBP1.06□□□□□ -2.24
SMCHD1-211ENST00000584897 MT1HL1P0DM35 61 aa1.05□□□□□ -2.24
SMCHD1-211ENST00000584897 PYY3Q5JQD4 70 aa1.05□□□□□ -2.24
SMCHD1-211ENST00000584897 LRP1Q07954 4544 aaKnown RBP1.05□□□□□ -2.24
SMCHD1-211ENST00000584897 CLPSL2Q6UWE3 100 aa1.05□□□□□ -2.24
SMCHD1-211ENST00000584897 COA5Q86WW8 74 aa1.05□□□□□ -2.24
SMCHD1-211ENST00000584897 TRBV10-3A0A0K0K1G6 114 aa1.05□□□□□ -2.24
SMCHD1-211ENST00000584897 COL5A1-AS1Q5SY13 56 aa1.05□□□□□ -2.24
SMCHD1-211ENST00000584897 LCE3EQ5T5B0 92 aa1.05□□□□□ -2.24
SMCHD1-211ENST00000584897 ATOH7Q8N100 152 aa1.05□□□□□ -2.24
SMCHD1-211ENST00000584897 UQCRQO14949 82 aa1.04□□□□□ -2.24
SMCHD1-211ENST00000584897 KRTAP5-5Q701N2 237 aaPredicted RBP1.04□□□□□ -2.24
SMCHD1-211ENST00000584897 PRR15Q8IV56 129 aa1.04□□□□□ -2.24
SMCHD1-211ENST00000584897 MUSTN1Q8IVN3 82 aa1.04□□□□□ -2.24
SMCHD1-211ENST00000584897 TP53AIP1Q9HCN2 124 aa1.04□□□□□ -2.24
SMCHD1-211ENST00000584897 LINC00846Q9NV44 126 aa1.04□□□□□ -2.24
SMCHD1-211ENST00000584897 LCE1CQ5T751 118 aa1.04□□□□□ -2.24
SMCHD1-211ENST00000584897 LCE1BQ5T7P3 118 aa1.04□□□□□ -2.24
SMCHD1-211ENST00000584897 CYSTM1Q9H1C7 97 aa1.04□□□□□ -2.24
SMCHD1-211ENST00000584897 FLGP20930 4061 aaPredicted RBP1.04□□□□□ -2.24
SMCHD1-211ENST00000584897 RBM3P98179 157 aaKnown RBP1.04□□□□□ -2.24
SMCHD1-211ENST00000584897 PHF5AQ7RTV0 110 aaKnown RBP1.04□□□□□ -2.24
SMCHD1-211ENST00000584897 CDC42SE1Q9NRR8 79 aa1.03□□□□□ -2.24
SMCHD1-211ENST00000584897 NEBP20929 6669 aa1.03□□□□□ -2.24
SMCHD1-211ENST00000584897 WFDC2Q14508 124 aa1.03□□□□□ -2.24
SMCHD1-211ENST00000584897 SMIM11BQ8TCY0 68 aa1.03□□□□□ -2.24
SMCHD1-211ENST00000584897 AHNAKQ09666 5890 aaKnown RBP1.03□□□□□ -2.25
SMCHD1-211ENST00000584897 A0A0G2JQZ4 141 aa1.03□□□□□ -2.25
SMCHD1-211ENST00000584897 K7EQZ3 153 aa1.03□□□□□ -2.25
SMCHD1-211ENST00000584897 ATOX1O00244 68 aa1.03□□□□□ -2.25
SMCHD1-211ENST00000584897 C9orf153Q5TBE3 101 aa1.03□□□□□ -2.25
SMCHD1-211ENST00000584897 NCR3O14931 201 aa1.02□□□□□ -2.25
SMCHD1-211ENST00000584897 UBL5Q9BZL1 73 aa1.02□□□□□ -2.25
SMCHD1-211ENST00000584897 P0C880 135 aa1.02□□□□□ -2.25
SMCHD1-211ENST00000584897 LRP2P98164 4655 aa1.02□□□□□ -2.25
SMCHD1-211ENST00000584897 KRTAP13-2Q52LG2 175 aa1.02□□□□□ -2.25
SMCHD1-211ENST00000584897 PP632Q6XCG6 107 aa1.02□□□□□ -2.25
SMCHD1-211ENST00000584897 OBSCN-AS1Q96MR7 158 aa1.02□□□□□ -2.25
SMCHD1-211ENST00000584897 CCKP06307 115 aa1.01□□□□□ -2.25
SMCHD1-211ENST00000584897 COX7CP15954 63 aa1.01□□□□□ -2.25
SMCHD1-211ENST00000584897 ATP11AUNQ6ZP68 121 aa1.01□□□□□ -2.25
SMCHD1-211ENST00000584897 PRO2289Q9P1D8 64 aa1.01□□□□□ -2.25
SMCHD1-211ENST00000584897 A0A1W2PPM0 123 aa1□□□□□ -2.25
SMCHD1-211ENST00000584897 Q1T7F1 81 aa1□□□□□ -2.25
SMCHD1-211ENST00000584897 Q6ZQY7 126 aa1□□□□□ -2.25
SMCHD1-211ENST00000584897 SPTSSBQ8NFR3 76 aa1□□□□□ -2.25
SMCHD1-211ENST00000584897 K7EP34 96 aa1□□□□□ -2.25
SMCHD1-211ENST00000584897 KRTAP2-3P0C7H8 128 aa1□□□□□ -2.25
SMCHD1-211ENST00000584897 NREPQ16612 68 aa1□□□□□ -2.25
SMCHD1-211ENST00000584897 KRTAP2-4Q9BYR9 128 aa1□□□□□ -2.25
SMCHD1-211ENST00000584897 RPL37P61927 97 aaKnown RBP1□□□□□ -2.25
SMCHD1-211ENST00000584897 Q8NDZ9 215 aa1□□□□□ -2.25
SMCHD1-211ENST00000584897 IGKV3D-7A0A0C4DH55 119 aa0.99□□□□□ -2.25
SMCHD1-211ENST00000584897 PRLHP81277 87 aa0.99□□□□□ -2.25
SMCHD1-211ENST00000584897 SPCS1Q9Y6A9 102 aa0.99□□□□□ -2.25
SMCHD1-211ENST00000584897 LOC101927531A0A1B0GV80 90 aa0.99□□□□□ -2.25
SMCHD1-211ENST00000584897 NPC2P61916 151 aa0.99□□□□□ -2.25
SMCHD1-211ENST00000584897 LINC00643Q86TS7 51 aa0.99□□□□□ -2.25
SMCHD1-211ENST00000584897 C20orf197Q8N268 126 aa0.99□□□□□ -2.25
SMCHD1-211ENST00000584897 C14orf144Q96I85 54 aa0.99□□□□□ -2.25
SMCHD1-211ENST00000584897 OBSCNQ5VST9 7968 aa0.98□□□□□ -2.25
SMCHD1-211ENST00000584897 CRIPTQ9P021 101 aa0.98□□□□□ -2.25
SMCHD1-211ENST00000584897 A0A1B0GV90 55 aa0.98□□□□□ -2.25
SMCHD1-211ENST00000584897 FAM236AA0A1B0GUQ0 79 aa0.98□□□□□ -2.25
SMCHD1-211ENST00000584897 FAM236BA0A1B0GV22 79 aa0.98□□□□□ -2.25
SMCHD1-211ENST00000584897 HCG22E2RYF7 251 aa0.98□□□□□ -2.25
SMCHD1-211ENST00000584897 NDUFC1O43677 76 aa0.98□□□□□ -2.25
SMCHD1-211ENST00000584897 SMR3BP02814 79 aaPredicted RBP0.98□□□□□ -2.25
SMCHD1-211ENST00000584897 MRPL34Q9BQ48 92 aaKnown RBP0.98□□□□□ -2.25
SMCHD1-211ENST00000584897 LINC00472Q9H8W2 130 aa0.98□□□□□ -2.25
SMCHD1-211ENST00000584897 ATP5EP56381 51 aaPredicted RBP0.97□□□□□ -2.25
SMCHD1-211ENST00000584897 MIR22HGQ0VDD5 57 aa0.97□□□□□ -2.25
SMCHD1-211ENST00000584897 A0A087WSZ3 146 aa0.97□□□□□ -2.25
SMCHD1-211ENST00000584897 A6NN06 94 aa0.97□□□□□ -2.25
SMCHD1-211ENST00000584897 USH2AO75445 5202 aa0.97□□□□□ -2.25
SMCHD1-211ENST00000584897 ZCCHC13Q8WW36 166 aaKnown RBP0.97□□□□□ -2.25
SMCHD1-211ENST00000584897 H3BUT2 72 aa0.96□□□□□ -2.26
SMCHD1-211ENST00000584897 ROMO1P60602 79 aa0.96□□□□□ -2.26
SMCHD1-211ENST00000584897 DEFB105AQ8NG35 78 aa0.96□□□□□ -2.26
SMCHD1-211ENST00000584897 MACF1Q9UPN3 7388 aaKnown RBP0.96□□□□□ -2.26
SMCHD1-211ENST00000584897 TRAV22A0A0B4J277 110 aa0.96□□□□□ -2.26
SMCHD1-211ENST00000584897 CCDC179H3BU77 68 aa0.96□□□□□ -2.26
SMCHD1-211ENST00000584897 H0YAA0 97 aa0.95□□□□□ -2.26
SMCHD1-211ENST00000584897 KRTAP19-6Q3LI70 58 aa0.94□□□□□ -2.26
SMCHD1-211ENST00000584897 DMAC1Q96GE9 116 aa0.94□□□□□ -2.26
SMCHD1-211ENST00000584897 Q96NJ1 140 aa0.94□□□□□ -2.26
SMCHD1-211ENST00000584897 KRTAP2-1Q9BYU5 128 aa0.94□□□□□ -2.26
SMCHD1-211ENST00000584897 LPAP08519 4548 aa0.94□□□□□ -2.26
SMCHD1-211ENST00000584897 FCGBPQ9Y6R7 5405 aaPredicted RBP0.94□□□□□ -2.26
SMCHD1-211ENST00000584897 KRTAP5-7Q6L8G8 165 aa0.93□□□□□ -2.26
SMCHD1-211ENST00000584897 MMP24-AS1A0A0U1RRL7 71 aa0.93□□□□□ -2.26
SMCHD1-211ENST00000584897 H1FX-AS1Q4G0G2 97 aa0.93□□□□□ -2.26
SMCHD1-211ENST00000584897 SERP1Q9Y6X1 66 aa0.93□□□□□ -2.26
SMCHD1-211ENST00000584897 COX6B2Q6YFQ2 88 aa0.93□□□□□ -2.26
SMCHD1-211ENST00000584897 HAMPP81172 84 aa0.92□□□□□ -2.26
SMCHD1-211ENST00000584897 ACYP2P14621 99 aa0.92□□□□□ -2.26
SMCHD1-211ENST00000584897 MT1HP80294 61 aa0.91□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms