RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 DMBT1Q9UGM3 2413 aaPredicted RBP8.04□□□□□ -1.12
NUP88-207ENST00000573584 KRTAP10-6P60371 365 aaPredicted RBP8.04□□□□□ -1.12
NUP88-207ENST00000573584 KRTAP10-8P60410 259 aa8.03□□□□□ -1.12
NUP88-207ENST00000573584 RPL37P61927 97 aaKnown RBP8.03□□□□□ -1.12
NUP88-207ENST00000573584 CRIPTQ9P021 101 aa8.02□□□□□ -1.13
NUP88-207ENST00000573584 KMT2CQ8NEZ4 4911 aaKnown RBP7.98□□□□□ -1.13
NUP88-207ENST00000573584 KRTAP13-4Q3LI77 160 aa7.98□□□□□ -1.13
NUP88-207ENST00000573584 XP32Q5T750 250 aa7.98□□□□□ -1.13
NUP88-207ENST00000573584 S4R3F8 94 aa7.97□□□□□ -1.13
NUP88-207ENST00000573584 KRTAP3-2Q9BYR7 98 aa7.97□□□□□ -1.13
NUP88-207ENST00000573584 A0A0D9SG42 100 aa7.96□□□□□ -1.14
NUP88-207ENST00000573584 MYCBP2O75592 4640 aa7.96□□□□□ -1.14
NUP88-207ENST00000573584 ROMO1P60602 79 aa7.96□□□□□ -1.14
NUP88-207ENST00000573584 Q5VSD8 79 aa7.94□□□□□ -1.14
NUP88-207ENST00000573584 P0C880 135 aa7.88□□□□□ -1.15
NUP88-207ENST00000573584 H3BS24 57 aa7.79□□□□□ -1.16
NUP88-207ENST00000573584 RYR1P21817 5038 aa7.78□□□□□ -1.16
NUP88-207ENST00000573584 TPRXLQ17RH7 258 aa7.75□□□□□ -1.17
NUP88-207ENST00000573584 KRTAP17-1Q9BYP8 105 aa7.75□□□□□ -1.17
NUP88-207ENST00000573584 KRTAP12-2P59991 146 aa7.74□□□□□ -1.17
NUP88-207ENST00000573584 LPAP08519 4548 aa7.74□□□□□ -1.17
NUP88-207ENST00000573584 MT1HL1P0DM35 61 aa7.73□□□□□ -1.17
NUP88-207ENST00000573584 C10orf95Q9H7T3 257 aa7.7□□□□□ -1.18
NUP88-207ENST00000573584 SPINT4Q6UDR6 99 aa7.68□□□□□ -1.18
NUP88-207ENST00000573584 RYR3Q15413 4870 aa7.68□□□□□ -1.18
NUP88-207ENST00000573584 LRP2P98164 4655 aa7.67□□□□□ -1.18
NUP88-207ENST00000573584 KRTAP12-1P59990 96 aa7.66□□□□□ -1.18
NUP88-207ENST00000573584 KIAA1109Q2LD37 5005 aa7.66□□□□□ -1.18
NUP88-207ENST00000573584 M0QZ58 72 aa7.62□□□□□ -1.19
NUP88-207ENST00000573584 ABCA13Q86UQ4 5058 aa7.47□□□□□ -1.21
NUP88-207ENST00000573584 KRTAP15-1Q3LI76 137 aa7.43□□□□□ -1.22
NUP88-207ENST00000573584 R4GN34 69 aa7.43□□□□□ -1.22
NUP88-207ENST00000573584 EPPK1P58107 5090 aaKnown RBP7.39□□□□□ -1.23
NUP88-207ENST00000573584 SEC61BP60468 96 aaKnown RBP7.34□□□□□ -1.24
NUP88-207ENST00000573584 MUC17Q685J3 4493 aa7.32□□□□□ -1.24
NUP88-207ENST00000573584 NDUFAF8A1L188 74 aa7.31□□□□□ -1.24
NUP88-207ENST00000573584 KRTAP4-5Q9BYR2 181 aa7.31□□□□□ -1.24
NUP88-207ENST00000573584 LORP23490 312 aaPredicted RBP7.3□□□□□ -1.24
NUP88-207ENST00000573584 KRTAP4-1Q9BYQ7 146 aa7.24□□□□□ -1.25
NUP88-207ENST00000573584 J3QL48 77 aa7.12□□□□□ -1.27
NUP88-207ENST00000573584 KRTAP19-2Q3LHN2 52 aa7.11□□□□□ -1.27
NUP88-207ENST00000573584 PLAC4Q8WY50 150 aa7.08□□□□□ -1.28
NUP88-207ENST00000573584 CAMK2N1Q7Z7J9 78 aa7.07□□□□□ -1.28
NUP88-207ENST00000573584 HERC2O95714 4834 aa7.03□□□□□ -1.28
NUP88-207ENST00000573584 MUC2Q02817 5179 aa7.03□□□□□ -1.28
NUP88-207ENST00000573584 PP632Q6XCG6 107 aa6.99□□□□□ -1.29
NUP88-207ENST00000573584 FLGP20930 4061 aaPredicted RBP6.94□□□□□ -1.3
NUP88-207ENST00000573584 BIRC6Q9NR09 4857 aa6.87□□□□□ -1.31
NUP88-207ENST00000573584 TNP1P09430 55 aa6.81□□□□□ -1.32
NUP88-207ENST00000573584 LUZP6Q538Z0 58 aa6.8□□□□□ -1.32
NUP88-207ENST00000573584 PCLOQ9Y6V0 5065 aa6.79□□□□□ -1.32
NUP88-207ENST00000573584 HERC1Q15751 4861 aa6.78□□□□□ -1.32
NUP88-207ENST00000573584 KRTAP23-1A1A580 65 aa6.71□□□□□ -1.33
NUP88-207ENST00000573584 FAT4Q6V0I7 4981 aa6.66□□□□□ -1.34
NUP88-207ENST00000573584 HMCN2Q8NDA2 5059 aa6.66□□□□□ -1.34
NUP88-207ENST00000573584 LCE2CQ5TA81 110 aa6.64□□□□□ -1.35
NUP88-207ENST00000573584 SPRR2GQ9BYE4 73 aa6.61□□□□□ -1.35
NUP88-207ENST00000573584 KRTAP19-1Q8IUB9 90 aa6.58□□□□□ -1.36
NUP88-207ENST00000573584 M0R2T5 61 aa6.55□□□□□ -1.36
NUP88-207ENST00000573584 SPRR5A0A1B0GTR4 108 aa6.54□□□□□ -1.36
NUP88-207ENST00000573584 A0A0A0MQY5 61 aa6.51□□□□□ -1.37
NUP88-207ENST00000573584 MT1HP80294 61 aa6.46□□□□□ -1.38
NUP88-207ENST00000573584 RNF213Q63HN8 5207 aa6.43□□□□□ -1.38
NUP88-207ENST00000573584 KRTAP10-10P60014 251 aa6.43□□□□□ -1.38
NUP88-207ENST00000573584 LCE3AQ5TA76 89 aa6.43□□□□□ -1.38
NUP88-207ENST00000573584 MT1FP04733 61 aa6.4□□□□□ -1.38
NUP88-207ENST00000573584 MT2AP02795 61 aa6.39□□□□□ -1.39
NUP88-207ENST00000573584 UBR4Q5T4S7 5183 aa6.37□□□□□ -1.39
NUP88-207ENST00000573584 KRTAP9-8Q9BYQ0 159 aa6.33□□□□□ -1.4
NUP88-207ENST00000573584 KRTAP19-8Q3LI54 63 aa6.29□□□□□ -1.4
NUP88-207ENST00000573584 KRTAP8-1Q8IUC2 63 aa6.26□□□□□ -1.41
NUP88-207ENST00000573584 KRTAP10-5P60370 271 aa6.22□□□□□ -1.41
NUP88-207ENST00000573584 MT1BP07438 61 aa6.21□□□□□ -1.42
NUP88-207ENST00000573584 MT1XP80297 61 aa6.2□□□□□ -1.42
NUP88-207ENST00000573584 KRTAP10-12P60413 245 aa6.13□□□□□ -1.43
NUP88-207ENST00000573584 KRTAP12-3P60328 96 aa6.12□□□□□ -1.43
NUP88-207ENST00000573584 KRTAP10-7P60409 375 aaPredicted RBP6.05□□□□□ -1.44
NUP88-207ENST00000573584 KRTAP9-3Q9BYQ3 159 aa6.05□□□□□ -1.44
NUP88-207ENST00000573584 PRO2289Q9P1D8 64 aa5.96□□□□□ -1.45
NUP88-207ENST00000573584 INE1O15225 51 aa5.86□□□□□ -1.47
NUP88-207ENST00000573584 KRTAP19-5Q3LI72 72 aa5.82□□□□□ -1.48
NUP88-207ENST00000573584 LCE2BO14633 110 aa5.8□□□□□ -1.48
NUP88-207ENST00000573584 USH2AO75445 5202 aa5.77□□□□□ -1.49
NUP88-207ENST00000573584 LCE3CQ5T5A8 94 aa5.76□□□□□ -1.49
NUP88-207ENST00000573584 KMT2DO14686 5537 aa5.75□□□□□ -1.49
NUP88-207ENST00000573584 KRTAP4-8A0A0G2JLE6 195 aa5.67□□□□□ -1.5
NUP88-207ENST00000573584 KRTAP4-8Q9BYQ9 185 aa5.67□□□□□ -1.5
NUP88-207ENST00000573584 KRTAP9-6A8MVA2 160 aa5.57□□□□□ -1.52
NUP88-207ENST00000573584 LCE2AQ5TA79 106 aaPredicted RBP5.57□□□□□ -1.52
NUP88-207ENST00000573584 KRTAP19-7Q3SYF9 63 aa5.53□□□□□ -1.52
NUP88-207ENST00000573584 KRTAP4-7Q9BYR0 210 aa5.48□□□□□ -1.53
NUP88-207ENST00000573584 KRTAP2-3P0C7H8 128 aa5.4□□□□□ -1.55
NUP88-207ENST00000573584 KRTAP2-4Q9BYR9 128 aa5.4□□□□□ -1.55
NUP88-207ENST00000573584 KRTAP2-1Q9BYU5 128 aa5.4□□□□□ -1.55
NUP88-207ENST00000573584 KRTAP19-4Q3LI73 84 aa5.38□□□□□ -1.55
NUP88-207ENST00000573584 MT1LQ93083 61 aa5.37□□□□□ -1.55
NUP88-207ENST00000573584 MT1EP04732 61 aa5.35□□□□□ -1.55
NUP88-207ENST00000573584 SSPOA2VEC9 5147 aa5.3□□□□□ -1.56
NUP88-207ENST00000573584 FSIP2Q5CZC0 6907 aa5.16□□□□□ -1.58
NUP88-207ENST00000573584 KRTAP19-6Q3LI70 58 aa5.14□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms