RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 ELOF1P60002 83 aaKnown RBP3.31□□□□□ -1.88
VPS53-212ENST00000572259 SPTSSBQ8NFR3 76 aa3.31□□□□□ -1.88
VPS53-212ENST00000572259 HCG22E2RYF7 251 aa3.3□□□□□ -1.88
VPS53-212ENST00000572259 NDUFC1O43677 76 aa3.3□□□□□ -1.88
VPS53-212ENST00000572259 SPATA45Q537H7 98 aa3.3□□□□□ -1.88
VPS53-212ENST00000572259 SERP2Q8N6R1 65 aa3.3□□□□□ -1.88
VPS53-212ENST00000572259 LRP2P98164 4655 aa3.3□□□□□ -1.88
VPS53-212ENST00000572259 TEX49A0A1B0GTD5 131 aa3.29□□□□□ -1.88
VPS53-212ENST00000572259 MOBPQ13875 183 aa3.29□□□□□ -1.88
VPS53-212ENST00000572259 BVES-AS1Q5T3Y7 98 aa3.29□□□□□ -1.88
VPS53-212ENST00000572259 SMIM11BQ8TCY0 68 aa3.29□□□□□ -1.88
VPS53-212ENST00000572259 CDC42SE1Q9NRR8 79 aa3.29□□□□□ -1.88
VPS53-212ENST00000572259 HIGD1BQ9P298 99 aa3.29□□□□□ -1.88
VPS53-212ENST00000572259 SPRR1BP22528 89 aa3.28□□□□□ -1.88
VPS53-212ENST00000572259 RPS29P62273 56 aaKnown RBP3.28□□□□□ -1.88
VPS53-212ENST00000572259 DEFB105AQ8NG35 78 aa3.28□□□□□ -1.88
VPS53-212ENST00000572259 LCE3EQ5T5B0 92 aa3.27□□□□□ -1.89
VPS53-212ENST00000572259 ORMDL1Q9P0S3 153 aa3.27□□□□□ -1.89
VPS53-212ENST00000572259 F8WEM9 126 aa3.26□□□□□ -1.89
VPS53-212ENST00000572259 H0YGX0 51 aa3.26□□□□□ -1.89
VPS53-212ENST00000572259 KRTAP12-2P59991 146 aa3.26□□□□□ -1.89
VPS53-212ENST00000572259 LIMD2Q9BT23 127 aa3.26□□□□□ -1.89
VPS53-212ENST00000572259 LINC00575Q6W349 94 aa3.25□□□□□ -1.89
VPS53-212ENST00000572259 IGLV5-48A0A075B6I7 105 aa3.24□□□□□ -1.89
VPS53-212ENST00000572259 A0A0G2JQZ4 141 aa3.24□□□□□ -1.89
VPS53-212ENST00000572259 TPRXLQ17RH7 258 aa3.24□□□□□ -1.89
VPS53-212ENST00000572259 DMAC1Q96GE9 116 aa3.24□□□□□ -1.89
VPS53-212ENST00000572259 PRO1854Q9UHT4 67 aa3.24□□□□□ -1.89
VPS53-212ENST00000572259 UBR4Q5T4S7 5183 aa3.23□□□□□ -1.89
VPS53-212ENST00000572259 LPAP08519 4548 aa3.23□□□□□ -1.89
VPS53-212ENST00000572259 COX6CP09669 75 aa3.23□□□□□ -1.89
VPS53-212ENST00000572259 CSAG1Q6PB30 78 aa3.23□□□□□ -1.89
VPS53-212ENST00000572259 Q6ZQY7 126 aa3.23□□□□□ -1.89
VPS53-212ENST00000572259 SPCS1Q9Y6A9 102 aa3.23□□□□□ -1.89
VPS53-212ENST00000572259 Q6JHZ5 121 aa3.22□□□□□ -1.89
VPS53-212ENST00000572259 DNAL4O96015 105 aa3.21□□□□□ -1.9
VPS53-212ENST00000572259 A0A1W2PPM0 123 aa3.2□□□□□ -1.9
VPS53-212ENST00000572259 ETDBQ3ZM63 59 aa3.2□□□□□ -1.9
VPS53-212ENST00000572259 KRTAP13-3Q3SY46 172 aa3.18□□□□□ -1.9
VPS53-212ENST00000572259 PRO0461Q9UI25 63 aa3.18□□□□□ -1.9
VPS53-212ENST00000572259 H7BZZ5 65 aa3.17□□□□□ -1.9
VPS53-212ENST00000572259 IGFL1Q6UW32 110 aa3.16□□□□□ -1.9
VPS53-212ENST00000572259 CYSTM1Q9H1C7 97 aa3.16□□□□□ -1.9
VPS53-212ENST00000572259 TRAV22A0A0B4J277 110 aa3.14□□□□□ -1.91
VPS53-212ENST00000572259 H3BUT2 72 aa3.14□□□□□ -1.91
VPS53-212ENST00000572259 KLKP1Q107X0 134 aa3.14□□□□□ -1.91
VPS53-212ENST00000572259 C9orf92A6NGG3 77 aa3.13□□□□□ -1.91
VPS53-212ENST00000572259 PDE6GP18545 87 aa3.13□□□□□ -1.91
VPS53-212ENST00000572259 Q5VV11 94 aa3.13□□□□□ -1.91
VPS53-212ENST00000572259 JMJD7-PLA2G4BH0Y9G9 81 aa3.12□□□□□ -1.91
VPS53-212ENST00000572259 CHKB-CPT1BH3BT56 60 aa3.12□□□□□ -1.91
VPS53-212ENST00000572259 ACYP1P07311 99 aa3.12□□□□□ -1.91
VPS53-212ENST00000572259 RNF213Q63HN8 5207 aa3.12□□□□□ -1.91
VPS53-212ENST00000572259 MUC17Q685J3 4493 aa3.11□□□□□ -1.91
VPS53-212ENST00000572259 TRBV7-4A0A0J9YYF1 115 aa3.11□□□□□ -1.91
VPS53-212ENST00000572259 ATXN8Q156A1 80 aa3.11□□□□□ -1.91
VPS53-212ENST00000572259 PCOTHQ58A44 107 aa3.08□□□□□ -1.92
VPS53-212ENST00000572259 LINC00643Q86TS7 51 aa3.08□□□□□ -1.92
VPS53-212ENST00000572259 IGKV4-1P06312 121 aa3.07□□□□□ -1.92
VPS53-212ENST00000572259 RPL37P61927 97 aaKnown RBP3.07□□□□□ -1.92
VPS53-212ENST00000572259 C20orf197Q8N268 126 aa3.07□□□□□ -1.92
VPS53-212ENST00000572259 OBSCN-AS1Q96MR7 158 aa3.07□□□□□ -1.92
VPS53-212ENST00000572259 MUC2Q02817 5179 aa3.07□□□□□ -1.92
VPS53-212ENST00000572259 LOC101927531A0A1B0GV80 90 aa3.06□□□□□ -1.92
VPS53-212ENST00000572259 Q96NJ1 140 aa3.06□□□□□ -1.92
VPS53-212ENST00000572259 NDUFB1O75438 58 aa3.04□□□□□ -1.92
VPS53-212ENST00000572259 FAT4Q6V0I7 4981 aa3.04□□□□□ -1.92
VPS53-212ENST00000572259 LOC110117498A0A087WWA1 95 aa3.03□□□□□ -1.92
VPS53-212ENST00000572259 INE1O15225 51 aa3.03□□□□□ -1.92
VPS53-212ENST00000572259 LINC00472Q9H8W2 130 aa3.03□□□□□ -1.92
VPS53-212ENST00000572259 COA5Q86WW8 74 aa3.02□□□□□ -1.93
VPS53-212ENST00000572259 NREPQ16612 68 aa3.01□□□□□ -1.93
VPS53-212ENST00000572259 COX6B2Q6YFQ2 88 aa3.01□□□□□ -1.93
VPS53-212ENST00000572259 KRTAP4-1Q9BYQ7 146 aa3.01□□□□□ -1.93
VPS53-212ENST00000572259 IGKV3D-7A0A0C4DH55 119 aa3□□□□□ -1.93
VPS53-212ENST00000572259 M0R2T5 61 aa2.96□□□□□ -1.94
VPS53-212ENST00000572259 SNURFQ9Y675 71 aa2.95□□□□□ -1.94
VPS53-212ENST00000572259 FLGP20930 4061 aaPredicted RBP2.94□□□□□ -1.94
VPS53-212ENST00000572259 UBL5Q9BZL1 73 aa2.94□□□□□ -1.94
VPS53-212ENST00000572259 LINC01558Q9Y6Z2 57 aa2.94□□□□□ -1.94
VPS53-212ENST00000572259 ZCCHC13Q8WW36 166 aaKnown RBP2.93□□□□□ -1.94
VPS53-212ENST00000572259 KRTAP19-2Q3LHN2 52 aa2.92□□□□□ -1.94
VPS53-212ENST00000572259 MRPL34Q9BQ48 92 aaKnown RBP2.92□□□□□ -1.94
VPS53-212ENST00000572259 MT1HP80294 61 aa2.91□□□□□ -1.94
VPS53-212ENST00000572259 K7EQZ3 153 aa2.9□□□□□ -1.95
VPS53-212ENST00000572259 UQCR11O14957 56 aa2.9□□□□□ -1.95
VPS53-212ENST00000572259 KRTAP5-8O75690 187 aa2.9□□□□□ -1.95
VPS53-212ENST00000572259 MMP24-AS1A0A0U1RRL7 71 aa2.89□□□□□ -1.95
VPS53-212ENST00000572259 SPINK7P58062 85 aa2.89□□□□□ -1.95
VPS53-212ENST00000572259 LINC00208Q96KT6 92 aa2.89□□□□□ -1.95
VPS53-212ENST00000572259 PRR15LQ9BU68 103 aa2.89□□□□□ -1.95
VPS53-212ENST00000572259 WFDC13Q8IUB5 93 aa2.88□□□□□ -1.95
VPS53-212ENST00000572259 LINC00846Q9NV44 126 aa2.88□□□□□ -1.95
VPS53-212ENST00000572259 LCE3AQ5TA76 89 aa2.86□□□□□ -1.95
VPS53-212ENST00000572259 TP53AIP1Q9HCN2 124 aa2.84□□□□□ -1.95
VPS53-212ENST00000572259 ATP5EP2Q5VTU8 51 aa2.82□□□□□ -1.96
VPS53-212ENST00000572259 SPRR5A0A1B0GTR4 108 aa2.81□□□□□ -1.96
VPS53-212ENST00000572259 PP632Q6XCG6 107 aa2.81□□□□□ -1.96
VPS53-212ENST00000572259 H1FX-AS1Q4G0G2 97 aa2.8□□□□□ -1.96
VPS53-212ENST00000572259 A0A087WVE0 104 aa2.79□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms