RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 P0C880 135 aa5.94□□□□□ -1.46
CLN3-238ENST00000569430 CAMK2N1Q7Z7J9 78 aa5.94□□□□□ -1.46
CLN3-238ENST00000569430 Q5VSD8 79 aa5.93□□□□□ -1.46
CLN3-238ENST00000569430 PKD1P98161 4303 aa5.89□□□□□ -1.47
CLN3-238ENST00000569430 KMT2CQ8NEZ4 4911 aaKnown RBP5.87□□□□□ -1.47
CLN3-238ENST00000569430 MYCBP2O75592 4640 aa5.87□□□□□ -1.47
CLN3-238ENST00000569430 TPRXLQ17RH7 258 aa5.86□□□□□ -1.47
CLN3-238ENST00000569430 DYNC1H1Q14204 4646 aaKnown RBP5.85□□□□□ -1.47
CLN3-238ENST00000569430 LRP1Q07954 4544 aaKnown RBP5.83□□□□□ -1.48
CLN3-238ENST00000569430 KRTAP13-4Q3LI77 160 aa5.82□□□□□ -1.48
CLN3-238ENST00000569430 SACSQ9NZJ4 4579 aa5.81□□□□□ -1.48
CLN3-238ENST00000569430 XP32Q5T750 250 aa5.81□□□□□ -1.48
CLN3-238ENST00000569430 J3QL48 77 aa5.8□□□□□ -1.48
CLN3-238ENST00000569430 KRTAP12-2P59991 146 aa5.78□□□□□ -1.48
CLN3-238ENST00000569430 KRTAP10-6P60371 365 aaPredicted RBP5.77□□□□□ -1.49
CLN3-238ENST00000569430 APOBP04114 4563 aaKnown RBP5.76□□□□□ -1.49
CLN3-238ENST00000569430 KRTAP10-8P60410 259 aa5.74□□□□□ -1.49
CLN3-238ENST00000569430 A0A0A0MQY5 61 aa5.74□□□□□ -1.49
CLN3-238ENST00000569430 FAT3Q8TDW7 4589 aa5.73□□□□□ -1.49
CLN3-238ENST00000569430 KIAA1109Q2LD37 5005 aa5.68□□□□□ -1.5
CLN3-238ENST00000569430 KRTAP12-1P59990 96 aa5.68□□□□□ -1.5
CLN3-238ENST00000569430 PLAC4Q8WY50 150 aa5.68□□□□□ -1.5
CLN3-238ENST00000569430 SEC61BP60468 96 aaKnown RBP5.65□□□□□ -1.5
CLN3-238ENST00000569430 A0A1B0GVY2 172 aa5.64□□□□□ -1.51
CLN3-238ENST00000569430 KRTAP3-3Q9BYR6 98 aa5.64□□□□□ -1.51
CLN3-238ENST00000569430 KRTAP3-2Q9BYR7 98 aa5.63□□□□□ -1.51
CLN3-238ENST00000569430 RYR2Q92736 4967 aa5.62□□□□□ -1.51
CLN3-238ENST00000569430 KRTAP10-4P60372 401 aaPredicted RBP5.61□□□□□ -1.51
CLN3-238ENST00000569430 RYR3Q15413 4870 aa5.59□□□□□ -1.51
CLN3-238ENST00000569430 HSPG2P98160 4391 aa5.57□□□□□ -1.52
CLN3-238ENST00000569430 KRTAP17-1Q9BYP8 105 aa5.56□□□□□ -1.52
CLN3-238ENST00000569430 KRTAP15-1Q3LI76 137 aa5.55□□□□□ -1.52
CLN3-238ENST00000569430 RYR1P21817 5038 aa5.54□□□□□ -1.52
CLN3-238ENST00000569430 PKHD1L1Q86WI1 4243 aa5.54□□□□□ -1.52
CLN3-238ENST00000569430 LPAP08519 4548 aa5.52□□□□□ -1.53
CLN3-238ENST00000569430 M0R2T5 61 aa5.5□□□□□ -1.53
CLN3-238ENST00000569430 LRP2P98164 4655 aa5.5□□□□□ -1.53
CLN3-238ENST00000569430 EPPK1P58107 5090 aaKnown RBP5.46□□□□□ -1.54
CLN3-238ENST00000569430 TNP1P09430 55 aa5.45□□□□□ -1.54
CLN3-238ENST00000569430 PP632Q6XCG6 107 aa5.43□□□□□ -1.54
CLN3-238ENST00000569430 ABCA13Q86UQ4 5058 aa5.43□□□□□ -1.54
CLN3-238ENST00000569430 KRTAP4-5Q9BYR2 181 aa5.39□□□□□ -1.55
CLN3-238ENST00000569430 TNXBP22105 4242 aa5.37□□□□□ -1.55
CLN3-238ENST00000569430 MUC2Q02817 5179 aa5.35□□□□□ -1.55
CLN3-238ENST00000569430 MT1HL1P0DM35 61 aa5.33□□□□□ -1.56
CLN3-238ENST00000569430 LORP23490 312 aaPredicted RBP5.25□□□□□ -1.57
CLN3-238ENST00000569430 HERC2O95714 4834 aa5.16□□□□□ -1.58
CLN3-238ENST00000569430 KRTAP4-1Q9BYQ7 146 aa5.08□□□□□ -1.6
CLN3-238ENST00000569430 HERC1Q15751 4861 aa5.08□□□□□ -1.6
CLN3-238ENST00000569430 FAT4Q6V0I7 4981 aa5.05□□□□□ -1.6
CLN3-238ENST00000569430 RNF213Q63HN8 5207 aa5.05□□□□□ -1.6
CLN3-238ENST00000569430 KRTAP10-10P60014 251 aa5.05□□□□□ -1.6
CLN3-238ENST00000569430 PCLOQ9Y6V0 5065 aa4.95□□□□□ -1.62
CLN3-238ENST00000569430 MUC17Q685J3 4493 aa4.87□□□□□ -1.63
CLN3-238ENST00000569430 UBR4Q5T4S7 5183 aa4.86□□□□□ -1.63
CLN3-238ENST00000569430 LCE3AQ5TA76 89 aa4.82□□□□□ -1.64
CLN3-238ENST00000569430 HMCN2Q8NDA2 5059 aa4.77□□□□□ -1.65
CLN3-238ENST00000569430 BIRC6Q9NR09 4857 aa4.76□□□□□ -1.65
CLN3-238ENST00000569430 KRTAP23-1A1A580 65 aa4.75□□□□□ -1.65
CLN3-238ENST00000569430 PRO2289Q9P1D8 64 aa4.73□□□□□ -1.65
CLN3-238ENST00000569430 KRTAP19-2Q3LHN2 52 aa4.72□□□□□ -1.65
CLN3-238ENST00000569430 INE1O15225 51 aa4.68□□□□□ -1.66
CLN3-238ENST00000569430 KRTAP12-3P60328 96 aa4.67□□□□□ -1.66
CLN3-238ENST00000569430 KRTAP10-12P60413 245 aa4.66□□□□□ -1.66
CLN3-238ENST00000569430 FLGP20930 4061 aaPredicted RBP4.64□□□□□ -1.67
CLN3-238ENST00000569430 SPRR2GQ9BYE4 73 aa4.55□□□□□ -1.68
CLN3-238ENST00000569430 LCE2CQ5TA81 110 aa4.54□□□□□ -1.68
CLN3-238ENST00000569430 USH2AO75445 5202 aa4.54□□□□□ -1.68
CLN3-238ENST00000569430 SPRR5A0A1B0GTR4 108 aa4.51□□□□□ -1.69
CLN3-238ENST00000569430 KRTAP19-1Q8IUB9 90 aa4.5□□□□□ -1.69
CLN3-238ENST00000569430 FSIP2Q5CZC0 6907 aa4.49□□□□□ -1.69
CLN3-238ENST00000569430 MT1HP80294 61 aa4.48□□□□□ -1.69
CLN3-238ENST00000569430 MT2AP02795 61 aa4.47□□□□□ -1.69
CLN3-238ENST00000569430 MT1FP04733 61 aa4.47□□□□□ -1.69
CLN3-238ENST00000569430 KRTAP8-1Q8IUC2 63 aa4.45□□□□□ -1.7
CLN3-238ENST00000569430 KMT2DO14686 5537 aa4.4□□□□□ -1.71
CLN3-238ENST00000569430 KRTAP9-8Q9BYQ0 159 aa4.33□□□□□ -1.72
CLN3-238ENST00000569430 KRTAP10-7P60409 375 aaPredicted RBP4.32□□□□□ -1.72
CLN3-238ENST00000569430 KRTAP19-5Q3LI72 72 aa4.29□□□□□ -1.72
CLN3-238ENST00000569430 CRCT1Q9UGL9 99 aa4.29□□□□□ -1.72
CLN3-238ENST00000569430 MT1XP80297 61 aa4.28□□□□□ -1.72
CLN3-238ENST00000569430 KRTAP10-5P60370 271 aa4.27□□□□□ -1.73
CLN3-238ENST00000569430 MT1BP07438 61 aa4.24□□□□□ -1.73
CLN3-238ENST00000569430 LCE3CQ5T5A8 94 aa4.24□□□□□ -1.73
CLN3-238ENST00000569430 KRTAP19-8Q3LI54 63 aa4.23□□□□□ -1.73
CLN3-238ENST00000569430 KRTAP9-3Q9BYQ3 159 aa4.12□□□□□ -1.75
CLN3-238ENST00000569430 KRTAP4-8A0A0G2JLE6 195 aa4.12□□□□□ -1.75
CLN3-238ENST00000569430 KRTAP4-8Q9BYQ9 185 aa4.12□□□□□ -1.75
CLN3-238ENST00000569430 LCE2BO14633 110 aa4.09□□□□□ -1.76
CLN3-238ENST00000569430 KRTAP4-7Q9BYR0 210 aa4.04□□□□□ -1.76
CLN3-238ENST00000569430 DSTQ03001 7570 aaKnown RBP4.03□□□□□ -1.76
CLN3-238ENST00000569430 SSPOA2VEC9 5147 aa3.9□□□□□ -1.79
CLN3-238ENST00000569430 SYNE1Q8NF91 8797 aaKnown RBP3.89□□□□□ -1.79
CLN3-238ENST00000569430 MUC12Q9UKN1 5478 aa3.89□□□□□ -1.79
CLN3-238ENST00000569430 OBSCNQ5VST9 7968 aa3.89□□□□□ -1.79
CLN3-238ENST00000569430 KRTAP12-4P60329 112 aa3.86□□□□□ -1.79
CLN3-238ENST00000569430 FCGBPQ9Y6R7 5405 aaPredicted RBP3.86□□□□□ -1.79
CLN3-238ENST00000569430 LCE2AQ5TA79 106 aaPredicted RBP3.85□□□□□ -1.79
CLN3-238ENST00000569430 MT1GP13640 62 aa3.84□□□□□ -1.79
CLN3-238ENST00000569430 KRTAP9-6A8MVA2 160 aa3.84□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 115.1 ms