RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 KRTAP10-10P60014 251 aa1.45□□□□□ -2.18
VPS35-208ENST00000568612 LYSTQ99698 3801 aa1.45□□□□□ -2.18
VPS35-208ENST00000568612 DNAH10Q8IVF4 4471 aa1.45□□□□□ -2.18
VPS35-208ENST00000568612 MTORP42345 2549 aa1.44□□□□□ -2.18
VPS35-208ENST00000568612 DNAH9Q9NYC9 4486 aa1.44□□□□□ -2.18
VPS35-208ENST00000568612 SETD2Q9BYW2 2564 aaPredicted RBP1.44□□□□□ -2.18
VPS35-208ENST00000568612 TTC28Q96AY4 2481 aa1.43□□□□□ -2.18
VPS35-208ENST00000568612 ZFYVE26Q68DK2 2539 aa1.43□□□□□ -2.18
VPS35-208ENST00000568612 DNAH3Q8TD57 4116 aa1.43□□□□□ -2.18
VPS35-208ENST00000568612 UNC79Q9P2D8 2635 aa1.43□□□□□ -2.18
VPS35-208ENST00000568612 CENPEQ02224 2701 aa1.43□□□□□ -2.18
VPS35-208ENST00000568612 DOPEY1Q5JWR5 2465 aa1.42□□□□□ -2.18
VPS35-208ENST00000568612 EYSQ5T1H1 3165 aa1.42□□□□□ -2.18
VPS35-208ENST00000568612 CHD8Q9HCK8 2581 aa1.42□□□□□ -2.18
VPS35-208ENST00000568612 NBEAL2Q6ZNJ1 2754 aa1.42□□□□□ -2.18
VPS35-208ENST00000568612 PKD1L2Q7Z442 2459 aa1.41□□□□□ -2.18
VPS35-208ENST00000568612 USP9YO00507 2555 aaPredicted RBP1.41□□□□□ -2.18
VPS35-208ENST00000568612 ITPR3Q14573 2671 aa1.41□□□□□ -2.18
VPS35-208ENST00000568612 TGP01266 2768 aa1.41□□□□□ -2.18
VPS35-208ENST00000568612 TENM4Q6N022 2769 aa1.41□□□□□ -2.18
VPS35-208ENST00000568612 MYO9AB2RTY4 2548 aa1.4□□□□□ -2.18
VPS35-208ENST00000568612 COL7A1Q02388 2944 aa1.4□□□□□ -2.18
VPS35-208ENST00000568612 EPG5Q9HCE0 2579 aa1.4□□□□□ -2.19
VPS35-208ENST00000568612 RPS29P62273 56 aaKnown RBP1.4□□□□□ -2.19
VPS35-208ENST00000568612 KRTAP13-2Q52LG2 175 aa1.4□□□□□ -2.19
VPS35-208ENST00000568612 LRRK2Q5S007 2527 aa1.4□□□□□ -2.19
VPS35-208ENST00000568612 PIEZO1Q92508 2521 aa1.4□□□□□ -2.19
VPS35-208ENST00000568612 CSMD2Q7Z408 3487 aa1.4□□□□□ -2.19
VPS35-208ENST00000568612 HIVEP1P15822 2718 aa1.39□□□□□ -2.19
VPS35-208ENST00000568612 DMBT1Q9UGM3 2413 aaPredicted RBP1.39□□□□□ -2.19
VPS35-208ENST00000568612 NBEAL1Q6ZS30 2694 aa1.39□□□□□ -2.19
VPS35-208ENST00000568612 HECTD4Q9Y4D8 3996 aa1.39□□□□□ -2.19
VPS35-208ENST00000568612 BDP1A6H8Y1 2624 aa1.38□□□□□ -2.19
VPS35-208ENST00000568612 HELZ2Q9BYK8 2649 aaKnown RBP1.38□□□□□ -2.19
VPS35-208ENST00000568612 APOBP04114 4563 aaKnown RBP1.38□□□□□ -2.19
VPS35-208ENST00000568612 ANKRD11Q6UB99 2663 aaPredicted RBP1.38□□□□□ -2.19
VPS35-208ENST00000568612 CFAP46Q8IYW2 2715 aa1.38□□□□□ -2.19
VPS35-208ENST00000568612 SACSQ9NZJ4 4579 aa1.37□□□□□ -2.19
VPS35-208ENST00000568612 PDZD2O15018 2839 aa1.37□□□□□ -2.19
VPS35-208ENST00000568612 ZNF292O60281 2723 aa1.37□□□□□ -2.19
VPS35-208ENST00000568612 VPS13BQ7Z7G8 4022 aa1.37□□□□□ -2.19
VPS35-208ENST00000568612 CACNA1AO00555 2505 aa1.36□□□□□ -2.19
VPS35-208ENST00000568612 CEP295Q9C0D2 2601 aa1.36□□□□□ -2.19
VPS35-208ENST00000568612 FLGP20930 4061 aaPredicted RBP1.35□□□□□ -2.19
VPS35-208ENST00000568612 MXRA5Q9NR99 2828 aa1.35□□□□□ -2.19
VPS35-208ENST00000568612 KMT2AQ03164 3969 aa1.35□□□□□ -2.19
VPS35-208ENST00000568612 STAB2Q8WWQ8 2551 aa1.35□□□□□ -2.19
VPS35-208ENST00000568612 ACANP16112 2415 aa1.35□□□□□ -2.19
VPS35-208ENST00000568612 FBN3Q75N90 2809 aa1.34□□□□□ -2.19
VPS35-208ENST00000568612 PKHD1L1Q86WI1 4243 aa1.34□□□□□ -2.19
VPS35-208ENST00000568612 ABCA12Q86UK0 2595 aa1.33□□□□□ -2.2
VPS35-208ENST00000568612 ZNF469Q96JG9 3925 aaPredicted RBP1.33□□□□□ -2.2
VPS35-208ENST00000568612 SMR3AQ99954 134 aa1.33□□□□□ -2.2
VPS35-208ENST00000568612 PKD1P98161 4303 aa1.33□□□□□ -2.2
VPS35-208ENST00000568612 USP24Q9UPU5 2620 aa1.33□□□□□ -2.2
VPS35-208ENST00000568612 ATRQ13535 2644 aa1.32□□□□□ -2.2
VPS35-208ENST00000568612 ITPR2Q14571 2701 aa1.32□□□□□ -2.2
VPS35-208ENST00000568612 DNAH5Q8TE73 4624 aa1.32□□□□□ -2.2
VPS35-208ENST00000568612 TEP1Q99973 2627 aaKnown RBP1.32□□□□□ -2.2
VPS35-208ENST00000568612 FASNP49327 2511 aaKnown RBP1.31□□□□□ -2.2
VPS35-208ENST00000568612 TNP1P09430 55 aa1.31□□□□□ -2.2
VPS35-208ENST00000568612 FAT3Q8TDW7 4589 aa1.31□□□□□ -2.2
VPS35-208ENST00000568612 HSPG2P98160 4391 aa1.3□□□□□ -2.2
VPS35-208ENST00000568612 C9orf92A6NGG3 77 aa1.3□□□□□ -2.2
VPS35-208ENST00000568612 PKD1L1Q8TDX9 2849 aa1.3□□□□□ -2.2
VPS35-208ENST00000568612 TNXBP22105 4242 aa1.29□□□□□ -2.2
VPS35-208ENST00000568612 LRP1Q07954 4544 aaKnown RBP1.29□□□□□ -2.2
VPS35-208ENST00000568612 FBN2P35556 2912 aa1.29□□□□□ -2.2
VPS35-208ENST00000568612 ZANQ9Y493 2812 aa1.29□□□□□ -2.2
VPS35-208ENST00000568612 FAT2Q9NYQ8 4349 aa1.29□□□□□ -2.2
VPS35-208ENST00000568612 TENM3Q9P273 2699 aa1.28□□□□□ -2.2
VPS35-208ENST00000568612 MUC19Q7Z5P9 8384 aa1.27□□□□□ -2.21
VPS35-208ENST00000568612 NOTCH1P46531 2555 aa1.27□□□□□ -2.21
VPS35-208ENST00000568612 PLECQ15149 4684 aaKnown RBP1.27□□□□□ -2.21
VPS35-208ENST00000568612 KRTAP5-7Q6L8G8 165 aa1.26□□□□□ -2.21
VPS35-208ENST00000568612 DYNC1H1Q14204 4646 aaKnown RBP1.26□□□□□ -2.21
VPS35-208ENST00000568612 ACACBO00763 2458 aa1.26□□□□□ -2.21
VPS35-208ENST00000568612 PKHD1P08F94 4074 aa1.25□□□□□ -2.21
VPS35-208ENST00000568612 STARD9Q9P2P6 4700 aa1.25□□□□□ -2.21
VPS35-208ENST00000568612 FLNCQ14315 2725 aa1.25□□□□□ -2.21
VPS35-208ENST00000568612 IGSF10Q6WRI0 2623 aa1.25□□□□□ -2.21
VPS35-208ENST00000568612 MYO18BQ8IUG5 2567 aa1.25□□□□□ -2.21
VPS35-208ENST00000568612 FLNAP21333 2647 aaKnown RBP1.24□□□□□ -2.21
VPS35-208ENST00000568612 POLQO75417 2590 aa1.23□□□□□ -2.21
VPS35-208ENST00000568612 J3QKU1 62 aa1.22□□□□□ -2.21
VPS35-208ENST00000568612 MGAM2Q2M2H8 2515 aa1.22□□□□□ -2.21
VPS35-208ENST00000568612 MAST4O15021 2626 aa1.2□□□□□ -2.22
VPS35-208ENST00000568612 LRP1BQ9NZR2 4599 aa1.2□□□□□ -2.22
VPS35-208ENST00000568612 TENM1Q9UKZ4 2725 aa1.19□□□□□ -2.22
VPS35-208ENST00000568612 STAB1Q9NY15 2570 aa1.18□□□□□ -2.22
VPS35-208ENST00000568612 NSD1Q96L73 2696 aaPredicted RBP1.18□□□□□ -2.22
VPS35-208ENST00000568612 KRTAP12-3P60328 96 aa1.18□□□□□ -2.22
VPS35-208ENST00000568612 KRTAP8-1Q8IUC2 63 aa1.18□□□□□ -2.22
VPS35-208ENST00000568612 KRTAP2-3P0C7H8 128 aa1.17□□□□□ -2.22
VPS35-208ENST00000568612 KRTAP2-4Q9BYR9 128 aa1.17□□□□□ -2.22
VPS35-208ENST00000568612 KRTAP2-1Q9BYU5 128 aa1.17□□□□□ -2.22
VPS35-208ENST00000568612 FAT1Q14517 4588 aa1.16□□□□□ -2.22
VPS35-208ENST00000568612 LPAP08519 4548 aa1.16□□□□□ -2.22
VPS35-208ENST00000568612 KRTAP6-3Q3LI67 103 aa1.16□□□□□ -2.22
VPS35-208ENST00000568612 HERC1Q15751 4861 aa1.16□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 106.2 ms