RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 IGKV3D-7A0A0C4DH55 119 aa5.58□□□□□ -1.52
CLK3-222ENST00000568232 A8MWP4 228 aa5.57□□□□□ -1.52
CLK3-222ENST00000568232 KRTAP5-9P26371 169 aa5.57□□□□□ -1.52
CLK3-222ENST00000568232 UQCRQO14949 82 aa5.56□□□□□ -1.52
CLK3-222ENST00000568232 BPY2O14599 106 aa5.55□□□□□ -1.52
CLK3-222ENST00000568232 A6NN06 94 aa5.53□□□□□ -1.52
CLK3-222ENST00000568232 COX7CP15954 63 aa5.53□□□□□ -1.52
CLK3-222ENST00000568232 SERP2Q8N6R1 65 aa5.53□□□□□ -1.52
CLK3-222ENST00000568232 A0A1W2PNM2 257 aa5.51□□□□□ -1.53
CLK3-222ENST00000568232 TRAV7A0A075B6U4 112 aa5.48□□□□□ -1.53
CLK3-222ENST00000568232 A0A087WVE0 104 aa5.48□□□□□ -1.53
CLK3-222ENST00000568232 TMEM258P61165 79 aa5.48□□□□□ -1.53
CLK3-222ENST00000568232 LINC00313P59037 77 aa5.47□□□□□ -1.53
CLK3-222ENST00000568232 PMAIP1Q13794 54 aa5.47□□□□□ -1.53
CLK3-222ENST00000568232 A0A087WSZ3 146 aa5.43□□□□□ -1.54
CLK3-222ENST00000568232 IGKV4-1P06312 121 aa5.43□□□□□ -1.54
CLK3-222ENST00000568232 NDUFC1O43677 76 aa5.42□□□□□ -1.54
CLK3-222ENST00000568232 NDUFB1O75438 58 aa5.41□□□□□ -1.54
CLK3-222ENST00000568232 MT1BP07438 61 aa5.41□□□□□ -1.54
CLK3-222ENST00000568232 SPINK7P58062 85 aa5.41□□□□□ -1.54
CLK3-222ENST00000568232 KRTAP10-5P60370 271 aa5.38□□□□□ -1.55
CLK3-222ENST00000568232 KLKP1Q107X0 134 aa5.38□□□□□ -1.55
CLK3-222ENST00000568232 KRTAP2-2Q9BYT5 123 aa5.38□□□□□ -1.55
CLK3-222ENST00000568232 KRTAP2-1Q9BYU5 128 aa5.38□□□□□ -1.55
CLK3-222ENST00000568232 HCG22E2RYF7 251 aa5.37□□□□□ -1.55
CLK3-222ENST00000568232 LINC00472Q9H8W2 130 aa5.37□□□□□ -1.55
CLK3-222ENST00000568232 SPRR2EP22531 72 aa5.36□□□□□ -1.55
CLK3-222ENST00000568232 SPRR2BP35325 72 aa5.36□□□□□ -1.55
CLK3-222ENST00000568232 SPRR2AP35326 72 aa5.36□□□□□ -1.55
CLK3-222ENST00000568232 WFDC13Q8IUB5 93 aa5.36□□□□□ -1.55
CLK3-222ENST00000568232 PRR15Q8IV56 129 aa5.36□□□□□ -1.55
CLK3-222ENST00000568232 K7EQZ3 153 aa5.35□□□□□ -1.55
CLK3-222ENST00000568232 C20orf197Q8N268 126 aa5.35□□□□□ -1.55
CLK3-222ENST00000568232 Q8N9L7 120 aa5.35□□□□□ -1.55
CLK3-222ENST00000568232 OCR1Q9BZK8 76 aa5.35□□□□□ -1.55
CLK3-222ENST00000568232 DEFB116Q30KQ4 102 aa5.34□□□□□ -1.55
CLK3-222ENST00000568232 SMIM26A0A096LP01 95 aa5.33□□□□□ -1.56
CLK3-222ENST00000568232 IGHV6-1A0A0B4J1U7 121 aa5.33□□□□□ -1.56
CLK3-222ENST00000568232 ATP5EP56381 51 aaPredicted RBP5.33□□□□□ -1.56
CLK3-222ENST00000568232 TMEM254Q8TBM7 123 aa5.33□□□□□ -1.56
CLK3-222ENST00000568232 ZCCHC13Q8WW36 166 aaKnown RBP5.33□□□□□ -1.56
CLK3-222ENST00000568232 SERP1Q9Y6X1 66 aa5.33□□□□□ -1.56
CLK3-222ENST00000568232 H3BPC8 53 aa5.32□□□□□ -1.56
CLK3-222ENST00000568232 Q5VV11 94 aa5.32□□□□□ -1.56
CLK3-222ENST00000568232 CASC2Q6XLA1 102 aa5.31□□□□□ -1.56
CLK3-222ENST00000568232 SPRR2FQ96RM1 72 aa5.31□□□□□ -1.56
CLK3-222ENST00000568232 TP53AIP1Q9HCN2 124 aa5.31□□□□□ -1.56
CLK3-222ENST00000568232 MP68P56378 58 aa5.3□□□□□ -1.56
CLK3-222ENST00000568232 LCE1AQ5T7P2 110 aa5.29□□□□□ -1.56
CLK3-222ENST00000568232 GPR98Q8WXG9 6306 aa5.29□□□□□ -1.56
CLK3-222ENST00000568232 A0A1B0GVX0 72 aa5.27□□□□□ -1.57
CLK3-222ENST00000568232 hDV103S1A0JD37 113 aa5.27□□□□□ -1.57
CLK3-222ENST00000568232 H7BZZ5 65 aa5.27□□□□□ -1.57
CLK3-222ENST00000568232 KRTAP19-8Q3LI54 63 aa5.27□□□□□ -1.57
CLK3-222ENST00000568232 C8orf87E5RJ46 101 aa5.26□□□□□ -1.57
CLK3-222ENST00000568232 H1FX-AS1Q4G0G2 97 aa5.26□□□□□ -1.57
CLK3-222ENST00000568232 BRK1Q8WUW1 75 aa5.25□□□□□ -1.57
CLK3-222ENST00000568232 C8orf17Q9NRJ1 99 aa5.24□□□□□ -1.57
CLK3-222ENST00000568232 SNURFQ9Y675 71 aa5.24□□□□□ -1.57
CLK3-222ENST00000568232 MMP24-AS1A0A0U1RRL7 71 aa5.23□□□□□ -1.57
CLK3-222ENST00000568232 CYSTM1Q9H1C7 97 aa5.21□□□□□ -1.58
CLK3-222ENST00000568232 TRAV22A0A0B4J277 110 aa5.2□□□□□ -1.58
CLK3-222ENST00000568232 MRPL34Q9BQ48 92 aaKnown RBP5.2□□□□□ -1.58
CLK3-222ENST00000568232 SPRR2GQ9BYE4 73 aa5.2□□□□□ -1.58
CLK3-222ENST00000568232 H0Y9P7 68 aa5.18□□□□□ -1.58
CLK3-222ENST00000568232 SPRR2DP22532 72 aa5.18□□□□□ -1.58
CLK3-222ENST00000568232 KTN1-AS1Q86SY8 53 aa5.18□□□□□ -1.58
CLK3-222ENST00000568232 SPANXA2-OT1Q8N9U9 137 aa5.17□□□□□ -1.58
CLK3-222ENST00000568232 NDUFS5O43920 106 aa5.16□□□□□ -1.58
CLK3-222ENST00000568232 C1orf64Q8NEQ6 169 aa5.16□□□□□ -1.58
CLK3-222ENST00000568232 LINC00208Q96KT6 92 aa5.16□□□□□ -1.58
CLK3-222ENST00000568232 LOC101927531A0A1B0GV80 90 aa5.13□□□□□ -1.59
CLK3-222ENST00000568232 CYP4F30PQ9H0H9 118 aa5.13□□□□□ -1.59
CLK3-222ENST00000568232 A0A0A0MQY5 61 aa5.11□□□□□ -1.59
CLK3-222ENST00000568232 KRTAP8-1Q8IUC2 63 aa5.09□□□□□ -1.59
CLK3-222ENST00000568232 LCA10Q71F78 164 aa5.07□□□□□ -1.6
CLK3-222ENST00000568232 A8MUN3 132 aa5.04□□□□□ -1.6
CLK3-222ENST00000568232 Q1T7F1 81 aa5.01□□□□□ -1.61
CLK3-222ENST00000568232 Q5W150 140 aa5.01□□□□□ -1.61
CLK3-222ENST00000568232 IGKV2D-30A0A075B6S6 120 aa4.99□□□□□ -1.61
CLK3-222ENST00000568232 IGKV2-30P06310 120 aa4.99□□□□□ -1.61
CLK3-222ENST00000568232 DSTQ03001 7570 aaKnown RBP4.98□□□□□ -1.61
CLK3-222ENST00000568232 ACYP2P14621 99 aa4.97□□□□□ -1.61
CLK3-222ENST00000568232 C7orf65Q6ZTY9 151 aa4.97□□□□□ -1.61
CLK3-222ENST00000568232 CSAG1Q6PB30 78 aa4.95□□□□□ -1.62
CLK3-222ENST00000568232 MT1XP80297 61 aa4.93□□□□□ -1.62
CLK3-222ENST00000568232 S4R3F8 94 aa4.93□□□□□ -1.62
CLK3-222ENST00000568232 COA5Q86WW8 74 aa4.92□□□□□ -1.62
CLK3-222ENST00000568232 DMAC1Q96GE9 116 aa4.91□□□□□ -1.62
CLK3-222ENST00000568232 LINC01554Q52M75 96 aa4.89□□□□□ -1.63
CLK3-222ENST00000568232 KRTAP5-11Q6L8G4 156 aa4.89□□□□□ -1.63
CLK3-222ENST00000568232 PRO2289Q9P1D8 64 aa4.89□□□□□ -1.63
CLK3-222ENST00000568232 CHKB-CPT1BH3BT56 60 aa4.87□□□□□ -1.63
CLK3-222ENST00000568232 KRTAP10-7P60409 375 aaPredicted RBP4.87□□□□□ -1.63
CLK3-222ENST00000568232 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.87□□□□□ -1.63
CLK3-222ENST00000568232 PSPHP1O15172 72 aa4.86□□□□□ -1.63
CLK3-222ENST00000568232 KRTAP12-2P59991 146 aa4.86□□□□□ -1.63
CLK3-222ENST00000568232 CRIPTQ9P021 101 aa4.85□□□□□ -1.63
CLK3-222ENST00000568232 SPTSSBQ8NFR3 76 aa4.84□□□□□ -1.63
CLK3-222ENST00000568232 LINC01558Q9Y6Z2 57 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 100 ms