RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 RPS29P62273 56 aaKnown RBP7.2□□□□□ -1.26
CLK3-215ENST00000564353 HSPG2P98160 4391 aa7.18□□□□□ -1.26
CLK3-215ENST00000564353 KIAA1109Q2LD37 5005 aa7.15□□□□□ -1.26
CLK3-215ENST00000564353 FAT3Q8TDW7 4589 aa7.15□□□□□ -1.26
CLK3-215ENST00000564353 KRTAP17-1Q9BYP8 105 aa7.14□□□□□ -1.27
CLK3-215ENST00000564353 NDUFAF8A1L188 74 aa7.13□□□□□ -1.27
CLK3-215ENST00000564353 TNXBP22105 4242 aa7.12□□□□□ -1.27
CLK3-215ENST00000564353 H0YAA0 97 aa7.11□□□□□ -1.27
CLK3-215ENST00000564353 RYR1P21817 5038 aa7.1□□□□□ -1.27
CLK3-215ENST00000564353 EPPK1P58107 5090 aaKnown RBP7.1□□□□□ -1.27
CLK3-215ENST00000564353 Q5VSD8 79 aa7.09□□□□□ -1.27
CLK3-215ENST00000564353 LPAP08519 4548 aa7.07□□□□□ -1.28
CLK3-215ENST00000564353 A0A1B0GU33 70 aa7.05□□□□□ -1.28
CLK3-215ENST00000564353 SPINT4Q6UDR6 99 aa7.05□□□□□ -1.28
CLK3-215ENST00000564353 COX6B2Q6YFQ2 88 aa7.03□□□□□ -1.28
CLK3-215ENST00000564353 KRTAP10-8P60410 259 aa7.02□□□□□ -1.29
CLK3-215ENST00000564353 H1FX-AS1Q4G0G2 97 aa7□□□□□ -1.29
CLK3-215ENST00000564353 XP32Q5T750 250 aa6.96□□□□□ -1.3
CLK3-215ENST00000564353 A0A0D9SG42 100 aa6.94□□□□□ -1.3
CLK3-215ENST00000564353 LRP2P98164 4655 aa6.93□□□□□ -1.3
CLK3-215ENST00000564353 RPL37P61927 97 aaKnown RBP6.91□□□□□ -1.3
CLK3-215ENST00000564353 KRTAP3-3Q9BYR6 98 aa6.91□□□□□ -1.3
CLK3-215ENST00000564353 ABCA13Q86UQ4 5058 aa6.9□□□□□ -1.31
CLK3-215ENST00000564353 KRTAP13-4Q3LI77 160 aa6.87□□□□□ -1.31
CLK3-215ENST00000564353 KRTAP10-6P60371 365 aaPredicted RBP6.84□□□□□ -1.31
CLK3-215ENST00000564353 S4R3F8 94 aa6.84□□□□□ -1.31
CLK3-215ENST00000564353 MT1HL1P0DM35 61 aa6.83□□□□□ -1.32
CLK3-215ENST00000564353 KRTAP4-5Q9BYR2 181 aa6.82□□□□□ -1.32
CLK3-215ENST00000564353 LUZP6Q538Z0 58 aa6.82□□□□□ -1.32
CLK3-215ENST00000564353 KRTAP15-1Q3LI76 137 aa6.81□□□□□ -1.32
CLK3-215ENST00000564353 KRTAP3-2Q9BYR7 98 aa6.78□□□□□ -1.32
CLK3-215ENST00000564353 K7ERS5 55 aa6.76□□□□□ -1.33
CLK3-215ENST00000564353 TPRXLQ17RH7 258 aa6.75□□□□□ -1.33
CLK3-215ENST00000564353 C10orf95Q9H7T3 257 aa6.75□□□□□ -1.33
CLK3-215ENST00000564353 HERC2O95714 4834 aa6.64□□□□□ -1.35
CLK3-215ENST00000564353 KRTAP12-2P59991 146 aa6.63□□□□□ -1.35
CLK3-215ENST00000564353 MUC2Q02817 5179 aa6.62□□□□□ -1.35
CLK3-215ENST00000564353 KRTAP12-1P59990 96 aa6.51□□□□□ -1.37
CLK3-215ENST00000564353 BIRC6Q9NR09 4857 aa6.49□□□□□ -1.37
CLK3-215ENST00000564353 KRTAP4-1Q9BYQ7 146 aa6.47□□□□□ -1.37
CLK3-215ENST00000564353 M0QZ58 72 aa6.46□□□□□ -1.37
CLK3-215ENST00000564353 J3QL48 77 aa6.46□□□□□ -1.38
CLK3-215ENST00000564353 MUC17Q685J3 4493 aa6.45□□□□□ -1.38
CLK3-215ENST00000564353 LORP23490 312 aaPredicted RBP6.44□□□□□ -1.38
CLK3-215ENST00000564353 HERC1Q15751 4861 aa6.44□□□□□ -1.38
CLK3-215ENST00000564353 PCLOQ9Y6V0 5065 aa6.43□□□□□ -1.38
CLK3-215ENST00000564353 SEC61BP60468 96 aaKnown RBP6.43□□□□□ -1.38
CLK3-215ENST00000564353 R4GN34 69 aa6.4□□□□□ -1.38
CLK3-215ENST00000564353 FAT4Q6V0I7 4981 aa6.26□□□□□ -1.41
CLK3-215ENST00000564353 HMCN2Q8NDA2 5059 aa6.23□□□□□ -1.41
CLK3-215ENST00000564353 KRTAP19-2Q3LHN2 52 aa6.19□□□□□ -1.42
CLK3-215ENST00000564353 PLAC4Q8WY50 150 aa6.17□□□□□ -1.42
CLK3-215ENST00000564353 RNF213Q63HN8 5207 aa6.16□□□□□ -1.42
CLK3-215ENST00000564353 CAMK2N1Q7Z7J9 78 aa6.11□□□□□ -1.43
CLK3-215ENST00000564353 UBR4Q5T4S7 5183 aa6.08□□□□□ -1.44
CLK3-215ENST00000564353 FLGP20930 4061 aaPredicted RBP6.06□□□□□ -1.44
CLK3-215ENST00000564353 M0R2T5 61 aa5.91□□□□□ -1.46
CLK3-215ENST00000564353 LCE2CQ5TA81 110 aa5.89□□□□□ -1.47
CLK3-215ENST00000564353 PRO2289Q9P1D8 64 aa5.77□□□□□ -1.49
CLK3-215ENST00000564353 TNP1P09430 55 aa5.76□□□□□ -1.49
CLK3-215ENST00000564353 MT1HP80294 61 aa5.74□□□□□ -1.49
CLK3-215ENST00000564353 KRTAP19-1Q8IUB9 90 aa5.74□□□□□ -1.49
CLK3-215ENST00000564353 KRTAP10-10P60014 251 aa5.72□□□□□ -1.49
CLK3-215ENST00000564353 PP632Q6XCG6 107 aa5.71□□□□□ -1.49
CLK3-215ENST00000564353 MT1FP04733 61 aa5.69□□□□□ -1.5
CLK3-215ENST00000564353 SPRR2GQ9BYE4 73 aa5.66□□□□□ -1.5
CLK3-215ENST00000564353 MT2AP02795 61 aa5.64□□□□□ -1.51
CLK3-215ENST00000564353 KRTAP9-8Q9BYQ0 159 aa5.58□□□□□ -1.52
CLK3-215ENST00000564353 LCE3AQ5TA76 89 aa5.56□□□□□ -1.52
CLK3-215ENST00000564353 USH2AO75445 5202 aa5.53□□□□□ -1.52
CLK3-215ENST00000564353 SPRR5A0A1B0GTR4 108 aa5.44□□□□□ -1.54
CLK3-215ENST00000564353 MT1BP07438 61 aa5.43□□□□□ -1.54
CLK3-215ENST00000564353 INE1O15225 51 aa5.43□□□□□ -1.54
CLK3-215ENST00000564353 KRTAP10-5P60370 271 aa5.41□□□□□ -1.54
CLK3-215ENST00000564353 KMT2DO14686 5537 aa5.41□□□□□ -1.54
CLK3-215ENST00000564353 KRTAP23-1A1A580 65 aa5.4□□□□□ -1.54
CLK3-215ENST00000564353 MT1XP80297 61 aa5.4□□□□□ -1.54
CLK3-215ENST00000564353 KRTAP19-8Q3LI54 63 aa5.37□□□□□ -1.55
CLK3-215ENST00000564353 KRTAP10-7P60409 375 aaPredicted RBP5.35□□□□□ -1.55
CLK3-215ENST00000564353 KRTAP9-3Q9BYQ3 159 aa5.34□□□□□ -1.55
CLK3-215ENST00000564353 KRTAP10-12P60413 245 aa5.29□□□□□ -1.56
CLK3-215ENST00000564353 KRTAP8-1Q8IUC2 63 aa5.25□□□□□ -1.57
CLK3-215ENST00000564353 KRTAP12-3P60328 96 aa5.24□□□□□ -1.57
CLK3-215ENST00000564353 LCE2AQ5TA79 106 aaPredicted RBP5.24□□□□□ -1.57
CLK3-215ENST00000564353 LCE2BO14633 110 aa5.22□□□□□ -1.57
CLK3-215ENST00000564353 FSIP2Q5CZC0 6907 aa5.19□□□□□ -1.58
CLK3-215ENST00000564353 LCE2DQ5TA82 110 aaPredicted RBP5.16□□□□□ -1.58
CLK3-215ENST00000564353 KRTAP4-8A0A0G2JLE6 195 aa5.11□□□□□ -1.59
CLK3-215ENST00000564353 KRTAP4-8Q9BYQ9 185 aa5.11□□□□□ -1.59
CLK3-215ENST00000564353 KRTAP19-5Q3LI72 72 aa5.09□□□□□ -1.59
CLK3-215ENST00000564353 SSPOA2VEC9 5147 aa4.96□□□□□ -1.62
CLK3-215ENST00000564353 KRTAP4-7Q9BYR0 210 aa4.93□□□□□ -1.62
CLK3-215ENST00000564353 LCE3CQ5T5A8 94 aa4.9□□□□□ -1.62
CLK3-215ENST00000564353 KRTAP9-6A8MVA2 160 aa4.84□□□□□ -1.63
CLK3-215ENST00000564353 KRTAP19-7Q3SYF9 63 aa4.81□□□□□ -1.64
CLK3-215ENST00000564353 FCGBPQ9Y6R7 5405 aaPredicted RBP4.74□□□□□ -1.65
CLK3-215ENST00000564353 MUC12Q9UKN1 5478 aa4.73□□□□□ -1.65
CLK3-215ENST00000564353 DSTQ03001 7570 aaKnown RBP4.68□□□□□ -1.66
CLK3-215ENST00000564353 KRTAP19-6Q3LI70 58 aa4.66□□□□□ -1.66
CLK3-215ENST00000564353 MT1LQ93083 61 aa4.65□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms