RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 R4GN34 69 aa1.75□□□□□ -2.13
VPS35-204ENST00000563884 HSBP1L1C9JCN9 74 aa1.74□□□□□ -2.13
VPS35-204ENST00000563884 NDUFS5O43920 106 aa1.74□□□□□ -2.13
VPS35-204ENST00000563884 SCGB1D4Q6XE38 83 aa1.74□□□□□ -2.13
VPS35-204ENST00000563884 C1orf64Q8NEQ6 169 aa1.74□□□□□ -2.13
VPS35-204ENST00000563884 SYNE1Q8NF91 8797 aaKnown RBP1.73□□□□□ -2.13
VPS35-204ENST00000563884 CCKP06307 115 aa1.73□□□□□ -2.13
VPS35-204ENST00000563884 RGS21Q2M5E4 152 aa1.73□□□□□ -2.13
VPS35-204ENST00000563884 MRPL34Q9BQ48 92 aaKnown RBP1.73□□□□□ -2.13
VPS35-204ENST00000563884 HSBP1O75506 76 aa1.72□□□□□ -2.13
VPS35-204ENST00000563884 FABP2P12104 132 aa1.72□□□□□ -2.13
VPS35-204ENST00000563884 MUSTN1Q8IVN3 82 aa1.72□□□□□ -2.13
VPS35-204ENST00000563884 TMEM254Q8TBM7 123 aa1.72□□□□□ -2.13
VPS35-204ENST00000563884 LEPROTL1O95214 131 aa1.71□□□□□ -2.14
VPS35-204ENST00000563884 C20orf197Q8N268 126 aa1.7□□□□□ -2.14
VPS35-204ENST00000563884 H3BQ85 93 aa1.69□□□□□ -2.14
VPS35-204ENST00000563884 ADM2Q7Z4H4 148 aa1.69□□□□□ -2.14
VPS35-204ENST00000563884 PMCHL2Q9BQD1 86 aa1.69□□□□□ -2.14
VPS35-204ENST00000563884 HCG22E2RYF7 251 aa1.68□□□□□ -2.14
VPS35-204ENST00000563884 M0QZ58 72 aa1.68□□□□□ -2.14
VPS35-204ENST00000563884 H0YGX0 51 aa1.67□□□□□ -2.14
VPS35-204ENST00000563884 NDUFC1O43677 76 aa1.67□□□□□ -2.14
VPS35-204ENST00000563884 LINC01554Q52M75 96 aa1.67□□□□□ -2.14
VPS35-204ENST00000563884 NAA38Q9BRA0 125 aaKnown RBP1.67□□□□□ -2.14
VPS35-204ENST00000563884 VPS25Q9BRG1 176 aa1.67□□□□□ -2.14
VPS35-204ENST00000563884 A0A1B0GX51 115 aa1.66□□□□□ -2.14
VPS35-204ENST00000563884 S100A6P06703 90 aa1.66□□□□□ -2.14
VPS35-204ENST00000563884 A0A1B0GV72 72 aa1.65□□□□□ -2.15
VPS35-204ENST00000563884 Q6ZQT0 140 aa1.65□□□□□ -2.15
VPS35-204ENST00000563884 MMP24-AS1A0A0U1RRL7 71 aa1.64□□□□□ -2.15
VPS35-204ENST00000563884 MT1LQ93083 61 aa1.64□□□□□ -2.15
VPS35-204ENST00000563884 DNAL4O96015 105 aa1.63□□□□□ -2.15
VPS35-204ENST00000563884 TTTY13Q9BZ97 58 aa1.63□□□□□ -2.15
VPS35-204ENST00000563884 BPY2O14599 106 aa1.62□□□□□ -2.15
VPS35-204ENST00000563884 FABP4P15090 132 aa1.62□□□□□ -2.15
VPS35-204ENST00000563884 KRTAP19-5Q3LI72 72 aa1.62□□□□□ -2.15
VPS35-204ENST00000563884 ORMDL1Q9P0S3 153 aa1.62□□□□□ -2.15
VPS35-204ENST00000563884 TMEM256-PLSCR3K7ERE1 68 aa1.61□□□□□ -2.15
VPS35-204ENST00000563884 P0C880 135 aa1.61□□□□□ -2.15
VPS35-204ENST00000563884 BATFQ16520 125 aa1.61□□□□□ -2.15
VPS35-204ENST00000563884 MT-ATP8P03928 68 aa1.6□□□□□ -2.15
VPS35-204ENST00000563884 A0A1B0GW54 56 aa1.59□□□□□ -2.15
VPS35-204ENST00000563884 LINC01545Q5VT33 79 aa1.59□□□□□ -2.15
VPS35-204ENST00000563884 V9GYY9 64 aa1.59□□□□□ -2.15
VPS35-204ENST00000563884 A0A1W2PPM0 123 aa1.57□□□□□ -2.16
VPS35-204ENST00000563884 C9JAW5 83 aa1.57□□□□□ -2.16
VPS35-204ENST00000563884 SYS1-DBNDD2H3BUS1 97 aa1.57□□□□□ -2.16
VPS35-204ENST00000563884 SPANXA2-OT1Q8N9U9 137 aa1.55□□□□□ -2.16
VPS35-204ENST00000563884 A0A087WVE0 104 aa1.54□□□□□ -2.16
VPS35-204ENST00000563884 A0A0D9SG42 100 aa1.54□□□□□ -2.16
VPS35-204ENST00000563884 CASC2Q6XLA1 102 aa1.54□□□□□ -2.16
VPS35-204ENST00000563884 NREPQ16612 68 aa1.53□□□□□ -2.16
VPS35-204ENST00000563884 SPINT4Q6UDR6 99 aa1.53□□□□□ -2.16
VPS35-204ENST00000563884 TMEM218A2RU14 115 aa1.52□□□□□ -2.17
VPS35-204ENST00000563884 KRTDAPP60985 99 aa1.52□□□□□ -2.17
VPS35-204ENST00000563884 ACYP1P07311 99 aa1.51□□□□□ -2.17
VPS35-204ENST00000563884 A0A0B4J2C4 111 aa1.5□□□□□ -2.17
VPS35-204ENST00000563884 FAM240AA0A1B0GVK7 77 aa1.49□□□□□ -2.17
VPS35-204ENST00000563884 C10orf95Q9H7T3 257 aa1.49□□□□□ -2.17
VPS35-204ENST00000563884 YPEL4Q96NS1 127 aa1.48□□□□□ -2.17
VPS35-204ENST00000563884 COX6CP09669 75 aa1.47□□□□□ -2.17
VPS35-204ENST00000563884 TP53AIP1Q9HCN2 124 aa1.47□□□□□ -2.17
VPS35-204ENST00000563884 LOC110117498A0A087WWA1 95 aa1.46□□□□□ -2.18
VPS35-204ENST00000563884 JMJD7-PLA2G4BH0Y9G9 81 aa1.45□□□□□ -2.18
VPS35-204ENST00000563884 CYP4F30PQ9H0H9 118 aa1.45□□□□□ -2.18
VPS35-204ENST00000563884 HIGD1BQ9P298 99 aa1.45□□□□□ -2.18
VPS35-204ENST00000563884 PRO1854Q9UHT4 67 aa1.45□□□□□ -2.18
VPS35-204ENST00000563884 SMIM26A0A096LP01 95 aa1.44□□□□□ -2.18
VPS35-204ENST00000563884 TRAV22A0A0B4J277 110 aa1.44□□□□□ -2.18
VPS35-204ENST00000563884 PSMB2P49721 201 aa1.44□□□□□ -2.18
VPS35-204ENST00000563884 KRTAP6-2Q3LI66 62 aa1.44□□□□□ -2.18
VPS35-204ENST00000563884 LOC101927531A0A1B0GV80 90 aa1.43□□□□□ -2.18
VPS35-204ENST00000563884 K7EP34 96 aa1.43□□□□□ -2.18
VPS35-204ENST00000563884 PSPHP1O15172 72 aa1.43□□□□□ -2.18
VPS35-204ENST00000563884 NDUFA5Q16718 116 aa1.43□□□□□ -2.18
VPS35-204ENST00000563884 CLLU1Q5K131 121 aa1.43□□□□□ -2.18
VPS35-204ENST00000563884 ATOH7Q8N100 152 aa1.43□□□□□ -2.18
VPS35-204ENST00000563884 MT1AP04731 61 aa1.42□□□□□ -2.18
VPS35-204ENST00000563884 KRTAP13-4Q3LI77 160 aa1.42□□□□□ -2.18
VPS35-204ENST00000563884 SVBPQ8N300 66 aa1.41□□□□□ -2.18
VPS35-204ENST00000563884 PRO0628Q9UI54 55 aa1.41□□□□□ -2.18
VPS35-204ENST00000563884 HIST3H2BBQ8N257 126 aa1.4□□□□□ -2.19
VPS35-204ENST00000563884 HIST1H2BLQ99880 126 aa1.4□□□□□ -2.19
VPS35-204ENST00000563884 APOC3P02656 99 aa1.39□□□□□ -2.19
VPS35-204ENST00000563884 BAALC-AS2P0C853 105 aa1.39□□□□□ -2.19
VPS35-204ENST00000563884 KRTAP6-1Q3LI64 71 aa1.39□□□□□ -2.19
VPS35-204ENST00000563884 LOC105371267A0A1B0GV96 52 aa1.38□□□□□ -2.19
VPS35-204ENST00000563884 PHGR1C9JFL3 82 aa1.38□□□□□ -2.19
VPS35-204ENST00000563884 S100A1P23297 94 aa1.38□□□□□ -2.19
VPS35-204ENST00000563884 C14orf132Q9NPU4 83 aa1.37□□□□□ -2.19
VPS35-204ENST00000563884 MP68P56378 58 aa1.35□□□□□ -2.19
VPS35-204ENST00000563884 ANAPC13Q9BS18 74 aa1.35□□□□□ -2.19
VPS35-204ENST00000563884 SCGB1C2P0DMR2 95 aa1.34□□□□□ -2.19
VPS35-204ENST00000563884 TSTD3H0UI37 97 aa1.33□□□□□ -2.2
VPS35-204ENST00000563884 ATOX1O00244 68 aa1.33□□□□□ -2.2
VPS35-204ENST00000563884 DLEU1O43261 78 aa1.33□□□□□ -2.2
VPS35-204ENST00000563884 COX8AP10176 69 aa1.33□□□□□ -2.2
VPS35-204ENST00000563884 PMAIP1Q13794 54 aa1.33□□□□□ -2.2
VPS35-204ENST00000563884 ATXN8Q156A1 80 aa1.33□□□□□ -2.2
VPS35-204ENST00000563884 SMIM20Q8N5G0 67 aa1.33□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms