RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 LOC101927531A0A1B0GV80 90 aa7.56□□□□□ -1.2
VPS9D1-203ENST00000563798 A0A087WVE0 104 aa7.55□□□□□ -1.2
VPS9D1-203ENST00000563798 KRTAP5-9P26371 169 aa7.5□□□□□ -1.21
VPS9D1-203ENST00000563798 IMUPQ9GZP8 106 aa7.5□□□□□ -1.21
VPS9D1-203ENST00000563798 H0YAA0 97 aa7.49□□□□□ -1.21
VPS9D1-203ENST00000563798 ACYP1P07311 99 aa7.49□□□□□ -1.21
VPS9D1-203ENST00000563798 UQCRQO14949 82 aa7.45□□□□□ -1.22
VPS9D1-203ENST00000563798 ATP5EP2Q5VTU8 51 aa7.45□□□□□ -1.22
VPS9D1-203ENST00000563798 FAM240AA0A1B0GVK7 77 aa7.44□□□□□ -1.22
VPS9D1-203ENST00000563798 MDN1Q9NU22 5596 aa7.43□□□□□ -1.22
VPS9D1-203ENST00000563798 ATOX1O00244 68 aa7.43□□□□□ -1.22
VPS9D1-203ENST00000563798 NDUFC1O43677 76 aa7.43□□□□□ -1.22
VPS9D1-203ENST00000563798 KMT2DO14686 5537 aa7.41□□□□□ -1.22
VPS9D1-203ENST00000563798 H0Y9P7 68 aa7.4□□□□□ -1.22
VPS9D1-203ENST00000563798 A8MUN3 132 aa7.39□□□□□ -1.23
VPS9D1-203ENST00000563798 HIST1H4AP62805 103 aaKnown RBP7.37□□□□□ -1.23
VPS9D1-203ENST00000563798 PCP4L1A6NKN8 68 aa7.33□□□□□ -1.24
VPS9D1-203ENST00000563798 ADM2Q7Z4H4 148 aa7.31□□□□□ -1.24
VPS9D1-203ENST00000563798 LINC00643Q86TS7 51 aa7.28□□□□□ -1.24
VPS9D1-203ENST00000563798 LINC00208Q96KT6 92 aa7.27□□□□□ -1.25
VPS9D1-203ENST00000563798 PRO2289Q9P1D8 64 aa7.26□□□□□ -1.25
VPS9D1-203ENST00000563798 MT1XP80297 61 aa7.25□□□□□ -1.25
VPS9D1-203ENST00000563798 KRTAP2-3P0C7H8 128 aa7.23□□□□□ -1.25
VPS9D1-203ENST00000563798 KRTAP2-4Q9BYR9 128 aa7.23□□□□□ -1.25
VPS9D1-203ENST00000563798 OCR1Q9BZK8 76 aa7.23□□□□□ -1.25
VPS9D1-203ENST00000563798 MP68P56378 58 aa7.21□□□□□ -1.26
VPS9D1-203ENST00000563798 PLAC4Q8WY50 150 aa7.19□□□□□ -1.26
VPS9D1-203ENST00000563798 SPRR2FQ96RM1 72 aa7.16□□□□□ -1.26
VPS9D1-203ENST00000563798 KRTAP12-2P59991 146 aa7.15□□□□□ -1.26
VPS9D1-203ENST00000563798 R4GN34 69 aa7.15□□□□□ -1.26
VPS9D1-203ENST00000563798 P0C880 135 aa7.14□□□□□ -1.27
VPS9D1-203ENST00000563798 C20orf197Q8N268 126 aa7.14□□□□□ -1.27
VPS9D1-203ENST00000563798 H3BPC8 53 aa7.13□□□□□ -1.27
VPS9D1-203ENST00000563798 DMAC1Q96GE9 116 aa7.11□□□□□ -1.27
VPS9D1-203ENST00000563798 SPRR2EP22531 72 aa7.09□□□□□ -1.27
VPS9D1-203ENST00000563798 SPRR2BP35325 72 aa7.09□□□□□ -1.27
VPS9D1-203ENST00000563798 SPRR2AP35326 72 aa7.09□□□□□ -1.27
VPS9D1-203ENST00000563798 KRTAP8-1Q8IUC2 63 aa7.09□□□□□ -1.27
VPS9D1-203ENST00000563798 KRTAP3-2Q9BYR7 98 aa7.09□□□□□ -1.27
VPS9D1-203ENST00000563798 M0QZ58 72 aa7.07□□□□□ -1.28
VPS9D1-203ENST00000563798 LCE1AQ5T7P2 110 aa7.03□□□□□ -1.28
VPS9D1-203ENST00000563798 KRTAP4-8A0A0G2JLE6 195 aa6.97□□□□□ -1.29
VPS9D1-203ENST00000563798 KRTAP4-8Q9BYQ9 185 aa6.97□□□□□ -1.29
VPS9D1-203ENST00000563798 TRAV7A0A075B6U4 112 aa6.96□□□□□ -1.3
VPS9D1-203ENST00000563798 KRTAP2-2Q9BYT5 123 aa6.96□□□□□ -1.3
VPS9D1-203ENST00000563798 KRTAP2-1Q9BYU5 128 aa6.96□□□□□ -1.3
VPS9D1-203ENST00000563798 GPR98Q8WXG9 6306 aa6.95□□□□□ -1.3
VPS9D1-203ENST00000563798 A0A1B0GV90 55 aa6.95□□□□□ -1.3
VPS9D1-203ENST00000563798 SCGB1A1P11684 91 aa6.94□□□□□ -1.3
VPS9D1-203ENST00000563798 LINC01554Q52M75 96 aa6.94□□□□□ -1.3
VPS9D1-203ENST00000563798 J3QR89 54 aa6.93□□□□□ -1.3
VPS9D1-203ENST00000563798 KRTAP10-12P60413 245 aa6.91□□□□□ -1.3
VPS9D1-203ENST00000563798 KRTAP10-7P60409 375 aaPredicted RBP6.89□□□□□ -1.31
VPS9D1-203ENST00000563798 ACYP2P14621 99 aa6.88□□□□□ -1.31
VPS9D1-203ENST00000563798 SPRR2DP22532 72 aa6.86□□□□□ -1.31
VPS9D1-203ENST00000563798 SPTSSBQ8NFR3 76 aa6.83□□□□□ -1.32
VPS9D1-203ENST00000563798 MT-ATP8P03928 68 aa6.79□□□□□ -1.32
VPS9D1-203ENST00000563798 SMIM20Q8N5G0 67 aa6.78□□□□□ -1.32
VPS9D1-203ENST00000563798 CHKB-CPT1BH3BT56 60 aa6.7□□□□□ -1.34
VPS9D1-203ENST00000563798 LCE3BQ5TA77 95 aa6.7□□□□□ -1.34
VPS9D1-203ENST00000563798 SPANXA2-OT1Q8N9U9 137 aa6.63□□□□□ -1.35
VPS9D1-203ENST00000563798 KRTAP13-4Q3LI77 160 aa6.6□□□□□ -1.35
VPS9D1-203ENST00000563798 SNURFQ9Y675 71 aa6.6□□□□□ -1.35
VPS9D1-203ENST00000563798 K7ERU9 68 aa6.58□□□□□ -1.36
VPS9D1-203ENST00000563798 CAMK2N1Q7Z7J9 78 aa6.53□□□□□ -1.36
VPS9D1-203ENST00000563798 KRTAP19-7Q3SYF9 63 aa6.49□□□□□ -1.37
VPS9D1-203ENST00000563798 LCE5AQ5TCM9 118 aa6.48□□□□□ -1.37
VPS9D1-203ENST00000563798 DSTQ03001 7570 aaKnown RBP6.47□□□□□ -1.37
VPS9D1-203ENST00000563798 SERP2Q8N6R1 65 aa6.46□□□□□ -1.38
VPS9D1-203ENST00000563798 MT1EP04732 61 aa6.44□□□□□ -1.38
VPS9D1-203ENST00000563798 KRTAP19-3Q7Z4W3 81 aa6.42□□□□□ -1.38
VPS9D1-203ENST00000563798 COA5Q86WW8 74 aa6.4□□□□□ -1.38
VPS9D1-203ENST00000563798 SEC61GP60059 68 aa6.35□□□□□ -1.39
VPS9D1-203ENST00000563798 SERP1Q9Y6X1 66 aa6.34□□□□□ -1.39
VPS9D1-203ENST00000563798 A0A0D9SG42 100 aa6.32□□□□□ -1.4
VPS9D1-203ENST00000563798 SPATA8Q6RVD6 105 aa6.3□□□□□ -1.4
VPS9D1-203ENST00000563798 A0A1B0GU33 70 aa6.28□□□□□ -1.4
VPS9D1-203ENST00000563798 KRTAP4-9Q9BYQ8 210 aa6.28□□□□□ -1.4
VPS9D1-203ENST00000563798 MT1GP13640 62 aa6.27□□□□□ -1.41
VPS9D1-203ENST00000563798 KRTAP12-1P59990 96 aa6.26□□□□□ -1.41
VPS9D1-203ENST00000563798 KRTAP19-5Q3LI72 72 aa6.25□□□□□ -1.41
VPS9D1-203ENST00000563798 SPINT4Q6UDR6 99 aa6.25□□□□□ -1.41
VPS9D1-203ENST00000563798 CYSTM1Q9H1C7 97 aa6.25□□□□□ -1.41
VPS9D1-203ENST00000563798 COX7CP15954 63 aa6.2□□□□□ -1.42
VPS9D1-203ENST00000563798 PP632Q6XCG6 107 aa6.19□□□□□ -1.42
VPS9D1-203ENST00000563798 HMCN1Q96RW7 5635 aa6.18□□□□□ -1.42
VPS9D1-203ENST00000563798 H7BZZ5 65 aa6.17□□□□□ -1.42
VPS9D1-203ENST00000563798 AHNAK2Q8IVF2 5795 aa6.15□□□□□ -1.42
VPS9D1-203ENST00000563798 MT1MQ8N339 61 aa6.13□□□□□ -1.43
VPS9D1-203ENST00000563798 LCE1DQ5T752 114 aa6.12□□□□□ -1.43
VPS9D1-203ENST00000563798 MT1LQ93083 61 aa6.12□□□□□ -1.43
VPS9D1-203ENST00000563798 SMIM26A0A096LP01 95 aa6.11□□□□□ -1.43
VPS9D1-203ENST00000563798 LCE4AQ5TA78 99 aa6.11□□□□□ -1.43
VPS9D1-203ENST00000563798 A0A1B0GU69 56 aa6.07□□□□□ -1.44
VPS9D1-203ENST00000563798 A8MU10 97 aa6.03□□□□□ -1.44
VPS9D1-203ENST00000563798 KRTAP5-10Q6L8G5 202 aa6.03□□□□□ -1.44
VPS9D1-203ENST00000563798 LCE3AQ5TA76 89 aa6.02□□□□□ -1.45
VPS9D1-203ENST00000563798 C10orf95Q9H7T3 257 aa6.01□□□□□ -1.45
VPS9D1-203ENST00000563798 TNP1P09430 55 aa6□□□□□ -1.45
VPS9D1-203ENST00000563798 KRTAP5-4Q6L8H1 288 aa6□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms