RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 GTF2H5Q6ZYL4 71 aa8.34□□□□□ -1.07
VPS35-202ENST00000561713 TRAV22A0A0B4J277 110 aa8.32□□□□□ -1.08
VPS35-202ENST00000561713 KRTAP2-3P0C7H8 128 aa8.3□□□□□ -1.08
VPS35-202ENST00000561713 KRTAP2-4Q9BYR9 128 aa8.3□□□□□ -1.08
VPS35-202ENST00000561713 F8W1H4 67 aa8.28□□□□□ -1.08
VPS35-202ENST00000561713 LOC101927531A0A1B0GV80 90 aa8.27□□□□□ -1.09
VPS35-202ENST00000561713 IMUPQ9GZP8 106 aa8.25□□□□□ -1.09
VPS35-202ENST00000561713 PCP4L1A6NKN8 68 aa8.24□□□□□ -1.09
VPS35-202ENST00000561713 H0Y9P7 68 aa8.2□□□□□ -1.1
VPS35-202ENST00000561713 CRIPTQ9P021 101 aa8.2□□□□□ -1.1
VPS35-202ENST00000561713 HIST1H4AP62805 103 aaKnown RBP8.19□□□□□ -1.1
VPS35-202ENST00000561713 NDUFC1O43677 76 aa8.14□□□□□ -1.11
VPS35-202ENST00000561713 UQCRQO14949 82 aa8.13□□□□□ -1.11
VPS35-202ENST00000561713 SPRR2EP22531 72 aa8.13□□□□□ -1.11
VPS35-202ENST00000561713 SPRR2BP35325 72 aa8.13□□□□□ -1.11
VPS35-202ENST00000561713 SPRR2AP35326 72 aa8.13□□□□□ -1.11
VPS35-202ENST00000561713 ATP5EP2Q5VTU8 51 aa8.13□□□□□ -1.11
VPS35-202ENST00000561713 SPRR2FQ96RM1 72 aa8.13□□□□□ -1.11
VPS35-202ENST00000561713 ACYP1P07311 99 aa8.11□□□□□ -1.11
VPS35-202ENST00000561713 ATOX1O00244 68 aa8.1□□□□□ -1.11
VPS35-202ENST00000561713 ADM2Q7Z4H4 148 aa8.1□□□□□ -1.11
VPS35-202ENST00000561713 H0YAA0 97 aa8.09□□□□□ -1.11
VPS35-202ENST00000561713 FAM240AA0A1B0GVK7 77 aa8.08□□□□□ -1.12
VPS35-202ENST00000561713 A8MUN3 132 aa8.05□□□□□ -1.12
VPS35-202ENST00000561713 LINC00208Q96KT6 92 aa8.03□□□□□ -1.12
VPS35-202ENST00000561713 MT1XP80297 61 aa8□□□□□ -1.13
VPS35-202ENST00000561713 KRTAP2-2Q9BYT5 123 aa8□□□□□ -1.13
VPS35-202ENST00000561713 KRTAP2-1Q9BYU5 128 aa8□□□□□ -1.13
VPS35-202ENST00000561713 LCE1AQ5T7P2 110 aa7.96□□□□□ -1.14
VPS35-202ENST00000561713 LINC00643Q86TS7 51 aa7.94□□□□□ -1.14
VPS35-202ENST00000561713 KRTAP8-1Q8IUC2 63 aa7.94□□□□□ -1.14
VPS35-202ENST00000561713 OCR1Q9BZK8 76 aa7.93□□□□□ -1.14
VPS35-202ENST00000561713 PRO2289Q9P1D8 64 aa7.93□□□□□ -1.14
VPS35-202ENST00000561713 P0C880 135 aa7.92□□□□□ -1.14
VPS35-202ENST00000561713 MP68P56378 58 aa7.9□□□□□ -1.14
VPS35-202ENST00000561713 PLAC4Q8WY50 150 aa7.89□□□□□ -1.15
VPS35-202ENST00000561713 R4GN34 69 aa7.88□□□□□ -1.15
VPS35-202ENST00000561713 SPRR2DP22532 72 aa7.86□□□□□ -1.15
VPS35-202ENST00000561713 M0QZ58 72 aa7.85□□□□□ -1.15
VPS35-202ENST00000561713 LINC01554Q52M75 96 aa7.79□□□□□ -1.16
VPS35-202ENST00000561713 DMAC1Q96GE9 116 aa7.79□□□□□ -1.16
VPS35-202ENST00000561713 KRTAP12-2P59991 146 aa7.78□□□□□ -1.16
VPS35-202ENST00000561713 C20orf197Q8N268 126 aa7.78□□□□□ -1.16
VPS35-202ENST00000561713 KRTAP3-2Q9BYR7 98 aa7.78□□□□□ -1.16
VPS35-202ENST00000561713 KRTAP4-8A0A0G2JLE6 195 aa7.76□□□□□ -1.17
VPS35-202ENST00000561713 A0A1B0GV90 55 aa7.76□□□□□ -1.17
VPS35-202ENST00000561713 KRTAP4-8Q9BYQ9 185 aa7.76□□□□□ -1.17
VPS35-202ENST00000561713 H3BPC8 53 aa7.71□□□□□ -1.18
VPS35-202ENST00000561713 LCE3BQ5TA77 95 aa7.69□□□□□ -1.18
VPS35-202ENST00000561713 KRTAP10-7P60409 375 aaPredicted RBP7.66□□□□□ -1.18
VPS35-202ENST00000561713 SCGB1A1P11684 91 aa7.65□□□□□ -1.18
VPS35-202ENST00000561713 GPR98Q8WXG9 6306 aa7.6□□□□□ -1.19
VPS35-202ENST00000561713 TRAV7A0A075B6U4 112 aa7.56□□□□□ -1.2
VPS35-202ENST00000561713 J3QR89 54 aa7.55□□□□□ -1.2
VPS35-202ENST00000561713 KRTAP10-12P60413 245 aa7.55□□□□□ -1.2
VPS35-202ENST00000561713 MT-ATP8P03928 68 aa7.53□□□□□ -1.2
VPS35-202ENST00000561713 ACYP2P14621 99 aa7.5□□□□□ -1.21
VPS35-202ENST00000561713 SPTSSBQ8NFR3 76 aa7.43□□□□□ -1.22
VPS35-202ENST00000561713 DSTQ03001 7570 aaKnown RBP7.43□□□□□ -1.22
VPS35-202ENST00000561713 CHKB-CPT1BH3BT56 60 aa7.42□□□□□ -1.22
VPS35-202ENST00000561713 SNURFQ9Y675 71 aa7.37□□□□□ -1.23
VPS35-202ENST00000561713 KRTAP13-4Q3LI77 160 aa7.35□□□□□ -1.23
VPS35-202ENST00000561713 SMIM20Q8N5G0 67 aa7.32□□□□□ -1.24
VPS35-202ENST00000561713 KRTAP4-9Q9BYQ8 210 aa7.32□□□□□ -1.24
VPS35-202ENST00000561713 CAMK2N1Q7Z7J9 78 aa7.23□□□□□ -1.25
VPS35-202ENST00000561713 K7ERU9 68 aa7.19□□□□□ -1.26
VPS35-202ENST00000561713 SPANXA2-OT1Q8N9U9 137 aa7.18□□□□□ -1.26
VPS35-202ENST00000561713 LCE5AQ5TCM9 118 aa7.17□□□□□ -1.26
VPS35-202ENST00000561713 KRTAP19-7Q3SYF9 63 aa7.14□□□□□ -1.27
VPS35-202ENST00000561713 A0A0D9SG42 100 aa7.11□□□□□ -1.27
VPS35-202ENST00000561713 MT1EP04732 61 aa7.1□□□□□ -1.27
VPS35-202ENST00000561713 COA5Q86WW8 74 aa7.09□□□□□ -1.27
VPS35-202ENST00000561713 LCE1DQ5T752 114 aa7.07□□□□□ -1.28
VPS35-202ENST00000561713 KRTAP19-3Q7Z4W3 81 aa7.07□□□□□ -1.28
VPS35-202ENST00000561713 SERP2Q8N6R1 65 aa7.07□□□□□ -1.28
VPS35-202ENST00000561713 HMCN1Q96RW7 5635 aa7.04□□□□□ -1.28
VPS35-202ENST00000561713 SPATA8Q6RVD6 105 aa7.02□□□□□ -1.29
VPS35-202ENST00000561713 SPINT4Q6UDR6 99 aa6.97□□□□□ -1.29
VPS35-202ENST00000561713 AHNAK2Q8IVF2 5795 aa6.95□□□□□ -1.3
VPS35-202ENST00000561713 SERP1Q9Y6X1 66 aa6.95□□□□□ -1.3
VPS35-202ENST00000561713 MT4P47944 62 aa6.94□□□□□ -1.3
VPS35-202ENST00000561713 SEC61GP60059 68 aa6.94□□□□□ -1.3
VPS35-202ENST00000561713 CYSTM1Q9H1C7 97 aa6.94□□□□□ -1.3
VPS35-202ENST00000561713 KRTAP19-5Q3LI72 72 aa6.93□□□□□ -1.3
VPS35-202ENST00000561713 KRTAP12-1P59990 96 aa6.9□□□□□ -1.3
VPS35-202ENST00000561713 LCE4AQ5TA78 99 aa6.89□□□□□ -1.31
VPS35-202ENST00000561713 A0A1B0GU33 70 aa6.88□□□□□ -1.31
VPS35-202ENST00000561713 MT1GP13640 62 aa6.83□□□□□ -1.32
VPS35-202ENST00000561713 KRTAP5-10Q6L8G5 202 aa6.8□□□□□ -1.32
VPS35-202ENST00000561713 COX7CP15954 63 aa6.79□□□□□ -1.32
VPS35-202ENST00000561713 H7BZZ5 65 aa6.77□□□□□ -1.33
VPS35-202ENST00000561713 MT1MQ8N339 61 aa6.77□□□□□ -1.33
VPS35-202ENST00000561713 PP632Q6XCG6 107 aa6.76□□□□□ -1.33
VPS35-202ENST00000561713 A8MU10 97 aa6.75□□□□□ -1.33
VPS35-202ENST00000561713 MT1LQ93083 61 aa6.75□□□□□ -1.33
VPS35-202ENST00000561713 LCE3AQ5TA76 89 aa6.7□□□□□ -1.34
VPS35-202ENST00000561713 KRTAP5-4Q6L8H1 288 aa6.7□□□□□ -1.34
VPS35-202ENST00000561713 KRTAP4-6Q9BYQ5 205 aa6.7□□□□□ -1.34
VPS35-202ENST00000561713 KRTAP4-3Q9BYR4 195 aa6.7□□□□□ -1.34
VPS35-202ENST00000561713 A0A1B0GU69 56 aa6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 968.2 ms