RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 KRTAP10-8P60410 259 aa5.84□□□□□ -1.47
LDLR-208ENST00000558518 DYNC1H1Q14204 4646 aaKnown RBP5.84□□□□□ -1.48
LDLR-208ENST00000558518 KRTAP10-6P60371 365 aaPredicted RBP5.82□□□□□ -1.48
LDLR-208ENST00000558518 LRP1Q07954 4544 aaKnown RBP5.81□□□□□ -1.48
LDLR-208ENST00000558518 RPS29P62273 56 aaKnown RBP5.81□□□□□ -1.48
LDLR-208ENST00000558518 KRTAP12-2P59991 146 aa5.78□□□□□ -1.48
LDLR-208ENST00000558518 KRTAP3-3Q9BYR6 98 aa5.76□□□□□ -1.49
LDLR-208ENST00000558518 SACSQ9NZJ4 4579 aa5.74□□□□□ -1.49
LDLR-208ENST00000558518 KRTAP3-2Q9BYR7 98 aa5.73□□□□□ -1.49
LDLR-208ENST00000558518 FAT3Q8TDW7 4589 aa5.72□□□□□ -1.49
LDLR-208ENST00000558518 HSPG2P98160 4391 aa5.71□□□□□ -1.5
LDLR-208ENST00000558518 APOBP04114 4563 aaKnown RBP5.7□□□□□ -1.5
LDLR-208ENST00000558518 XP32Q5T750 250 aa5.69□□□□□ -1.5
LDLR-208ENST00000558518 Q5VSD8 79 aa5.67□□□□□ -1.5
LDLR-208ENST00000558518 KRTAP10-4P60372 401 aaPredicted RBP5.65□□□□□ -1.51
LDLR-208ENST00000558518 M0QZ58 72 aa5.64□□□□□ -1.51
LDLR-208ENST00000558518 KRTAP12-1P59990 96 aa5.63□□□□□ -1.51
LDLR-208ENST00000558518 R4GN34 69 aa5.59□□□□□ -1.51
LDLR-208ENST00000558518 LPAP08519 4548 aa5.58□□□□□ -1.52
LDLR-208ENST00000558518 PKHD1L1Q86WI1 4243 aa5.58□□□□□ -1.52
LDLR-208ENST00000558518 A0A1B0GVY2 172 aa5.57□□□□□ -1.52
LDLR-208ENST00000558518 KRTAP15-1Q3LI76 137 aa5.57□□□□□ -1.52
LDLR-208ENST00000558518 LRP2P98164 4655 aa5.55□□□□□ -1.52
LDLR-208ENST00000558518 KMT2CQ8NEZ4 4911 aaKnown RBP5.54□□□□□ -1.52
LDLR-208ENST00000558518 KIAA1109Q2LD37 5005 aa5.46□□□□□ -1.54
LDLR-208ENST00000558518 KRTAP21-3Q3LHN1 58 aa5.45□□□□□ -1.54
LDLR-208ENST00000558518 CAMK2N1Q7Z7J9 78 aa5.44□□□□□ -1.54
LDLR-208ENST00000558518 RYR3Q15413 4870 aa5.42□□□□□ -1.54
LDLR-208ENST00000558518 TNXBP22105 4242 aa5.41□□□□□ -1.54
LDLR-208ENST00000558518 RYR1P21817 5038 aa5.41□□□□□ -1.54
LDLR-208ENST00000558518 PLAC4Q8WY50 150 aa5.41□□□□□ -1.54
LDLR-208ENST00000558518 LORP23490 312 aaPredicted RBP5.4□□□□□ -1.55
LDLR-208ENST00000558518 KRTAP17-1Q9BYP8 105 aa5.4□□□□□ -1.55
LDLR-208ENST00000558518 LUZP6Q538Z0 58 aa5.35□□□□□ -1.55
LDLR-208ENST00000558518 RYR2Q92736 4967 aa5.34□□□□□ -1.56
LDLR-208ENST00000558518 MT1HL1P0DM35 61 aa5.33□□□□□ -1.56
LDLR-208ENST00000558518 ABCA13Q86UQ4 5058 aa5.26□□□□□ -1.57
LDLR-208ENST00000558518 A0A0A0MQY5 61 aa5.24□□□□□ -1.57
LDLR-208ENST00000558518 MUC2Q02817 5179 aa5.22□□□□□ -1.57
LDLR-208ENST00000558518 EPPK1P58107 5090 aaKnown RBP5.22□□□□□ -1.57
LDLR-208ENST00000558518 J3QL48 77 aa5.22□□□□□ -1.57
LDLR-208ENST00000558518 KRTAP4-5Q9BYR2 181 aa5.2□□□□□ -1.58
LDLR-208ENST00000558518 SEC61BP60468 96 aaKnown RBP5.19□□□□□ -1.58
LDLR-208ENST00000558518 KRTAP4-1Q9BYQ7 146 aa5.14□□□□□ -1.59
LDLR-208ENST00000558518 TNP1P09430 55 aa5.05□□□□□ -1.6
LDLR-208ENST00000558518 PP632Q6XCG6 107 aa5.03□□□□□ -1.6
LDLR-208ENST00000558518 M0R2T5 61 aa4.99□□□□□ -1.61
LDLR-208ENST00000558518 FAT4Q6V0I7 4981 aa4.94□□□□□ -1.62
LDLR-208ENST00000558518 MUC17Q685J3 4493 aa4.93□□□□□ -1.62
LDLR-208ENST00000558518 HERC2O95714 4834 aa4.88□□□□□ -1.63
LDLR-208ENST00000558518 PCLOQ9Y6V0 5065 aa4.87□□□□□ -1.63
LDLR-208ENST00000558518 BIRC6Q9NR09 4857 aa4.81□□□□□ -1.64
LDLR-208ENST00000558518 RNF213Q63HN8 5207 aa4.79□□□□□ -1.64
LDLR-208ENST00000558518 KRTAP19-2Q3LHN2 52 aa4.78□□□□□ -1.64
LDLR-208ENST00000558518 LCE3AQ5TA76 89 aa4.77□□□□□ -1.65
LDLR-208ENST00000558518 HERC1Q15751 4861 aa4.77□□□□□ -1.65
LDLR-208ENST00000558518 KRTAP10-10P60014 251 aa4.74□□□□□ -1.65
LDLR-208ENST00000558518 FLGP20930 4061 aaPredicted RBP4.72□□□□□ -1.65
LDLR-208ENST00000558518 HMCN2Q8NDA2 5059 aa4.68□□□□□ -1.66
LDLR-208ENST00000558518 SPRR5A0A1B0GTR4 108 aa4.6□□□□□ -1.67
LDLR-208ENST00000558518 KRTAP19-1Q8IUB9 90 aa4.6□□□□□ -1.67
LDLR-208ENST00000558518 KRTAP23-1A1A580 65 aa4.57□□□□□ -1.68
LDLR-208ENST00000558518 UBR4Q5T4S7 5183 aa4.56□□□□□ -1.68
LDLR-208ENST00000558518 MT1FP04733 61 aa4.53□□□□□ -1.68
LDLR-208ENST00000558518 SPRR2GQ9BYE4 73 aa4.53□□□□□ -1.68
LDLR-208ENST00000558518 LCE2CQ5TA81 110 aa4.51□□□□□ -1.69
LDLR-208ENST00000558518 KRTAP12-3P60328 96 aa4.5□□□□□ -1.69
LDLR-208ENST00000558518 MT2AP02795 61 aa4.48□□□□□ -1.69
LDLR-208ENST00000558518 PRO2289Q9P1D8 64 aa4.48□□□□□ -1.69
LDLR-208ENST00000558518 KRTAP10-12P60413 245 aa4.47□□□□□ -1.69
LDLR-208ENST00000558518 MT1HP80294 61 aa4.47□□□□□ -1.69
LDLR-208ENST00000558518 KMT2DO14686 5537 aa4.44□□□□□ -1.7
LDLR-208ENST00000558518 USH2AO75445 5202 aa4.41□□□□□ -1.7
LDLR-208ENST00000558518 KRTAP10-7P60409 375 aaPredicted RBP4.4□□□□□ -1.7
LDLR-208ENST00000558518 KRTAP8-1Q8IUC2 63 aa4.39□□□□□ -1.71
LDLR-208ENST00000558518 KRTAP10-5P60370 271 aa4.37□□□□□ -1.71
LDLR-208ENST00000558518 MT1XP80297 61 aa4.36□□□□□ -1.71
LDLR-208ENST00000558518 INE1O15225 51 aa4.34□□□□□ -1.71
LDLR-208ENST00000558518 KRTAP9-8Q9BYQ0 159 aa4.33□□□□□ -1.72
LDLR-208ENST00000558518 MT1BP07438 61 aa4.33□□□□□ -1.72
LDLR-208ENST00000558518 KRTAP19-5Q3LI72 72 aa4.26□□□□□ -1.73
LDLR-208ENST00000558518 FSIP2Q5CZC0 6907 aa4.23□□□□□ -1.73
LDLR-208ENST00000558518 KRTAP19-8Q3LI54 63 aa4.23□□□□□ -1.73
LDLR-208ENST00000558518 KRTAP4-8A0A0G2JLE6 195 aa4.21□□□□□ -1.74
LDLR-208ENST00000558518 KRTAP4-8Q9BYQ9 185 aa4.21□□□□□ -1.74
LDLR-208ENST00000558518 KRTAP4-7Q9BYR0 210 aa4.18□□□□□ -1.74
LDLR-208ENST00000558518 LCE3CQ5T5A8 94 aa4.16□□□□□ -1.74
LDLR-208ENST00000558518 KRTAP9-3Q9BYQ3 159 aa4.12□□□□□ -1.75
LDLR-208ENST00000558518 KRTAP9-6A8MVA2 160 aa4.07□□□□□ -1.76
LDLR-208ENST00000558518 CRCT1Q9UGL9 99 aa4.07□□□□□ -1.76
LDLR-208ENST00000558518 LCE2BO14633 110 aa4.04□□□□□ -1.76
LDLR-208ENST00000558518 DSTQ03001 7570 aaKnown RBP4.03□□□□□ -1.76
LDLR-208ENST00000558518 OBSCNQ5VST9 7968 aa3.98□□□□□ -1.77
LDLR-208ENST00000558518 FCGBPQ9Y6R7 5405 aaPredicted RBP3.95□□□□□ -1.78
LDLR-208ENST00000558518 SYNE1Q8NF91 8797 aaKnown RBP3.94□□□□□ -1.78
LDLR-208ENST00000558518 LOC100996750A0A140TA64 210 aa3.88□□□□□ -1.79
LDLR-208ENST00000558518 KRTAP19-7Q3SYF9 63 aa3.86□□□□□ -1.79
LDLR-208ENST00000558518 KRTAP4-3Q9BYR4 195 aa3.85□□□□□ -1.79
LDLR-208ENST00000558518 MUC12Q9UKN1 5478 aa3.84□□□□□ -1.79
LDLR-208ENST00000558518 MT1GP13640 62 aa3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms