RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 MEGF8Q7Z7M0 2845 aa0.99□□□□□ -2.25
LINC00643-204ENST00000555934 UBR5O95071 2799 aaPredicted RBP0.99□□□□□ -2.25
LINC00643-204ENST00000555934 KRTAP19-3Q7Z4W3 81 aa0.99□□□□□ -2.25
LINC00643-204ENST00000555934 SMR3AQ99954 134 aa0.99□□□□□ -2.25
LINC00643-204ENST00000555934 TACC2O95359 2948 aa0.99□□□□□ -2.25
LINC00643-204ENST00000555934 LRBAP50851 2863 aa0.99□□□□□ -2.25
LINC00643-204ENST00000555934 ITPR3Q14573 2671 aa0.99□□□□□ -2.25
LINC00643-204ENST00000555934 POLQO75417 2590 aa0.99□□□□□ -2.25
LINC00643-204ENST00000555934 CHD8Q9HCK8 2581 aa0.99□□□□□ -2.25
LINC00643-204ENST00000555934 CCDC168Q8NDH2 2452 aa0.98□□□□□ -2.25
LINC00643-204ENST00000555934 SETXQ7Z333 2677 aaKnown RBP0.98□□□□□ -2.25
LINC00643-204ENST00000555934 EPG5Q9HCE0 2579 aa0.98□□□□□ -2.25
LINC00643-204ENST00000555934 NBPF19A0A087WUL8 3843 aa0.98□□□□□ -2.25
LINC00643-204ENST00000555934 ABCA12Q86UK0 2595 aa0.98□□□□□ -2.25
LINC00643-204ENST00000555934 SPTBN4Q9H254 2564 aa0.98□□□□□ -2.25
LINC00643-204ENST00000555934 FLNAP21333 2647 aaKnown RBP0.97□□□□□ -2.25
LINC00643-204ENST00000555934 SPINK1P00995 79 aa0.97□□□□□ -2.25
LINC00643-204ENST00000555934 MTORP42345 2549 aa0.97□□□□□ -2.25
LINC00643-204ENST00000555934 MXRA5Q9NR99 2828 aa0.97□□□□□ -2.25
LINC00643-204ENST00000555934 ZANQ9Y493 2812 aa0.97□□□□□ -2.25
LINC00643-204ENST00000555934 CFAP46Q8IYW2 2715 aa0.96□□□□□ -2.26
LINC00643-204ENST00000555934 CELSR2Q9HCU4 2923 aa0.96□□□□□ -2.26
LINC00643-204ENST00000555934 AHNAK2Q8IVF2 5795 aa0.96□□□□□ -2.26
LINC00643-204ENST00000555934 NIPBLQ6KC79 2804 aaeCLIP0.96□□□□□ -2.26
LINC00643-204ENST00000555934 MYO18BQ8IUG5 2567 aa0.96□□□□□ -2.26
LINC00643-204ENST00000555934 CUBNO60494 3623 aa0.96□□□□□ -2.26
LINC00643-204ENST00000555934 CHD6Q8TD26 2715 aa0.96□□□□□ -2.26
LINC00643-204ENST00000555934 APCP25054 2843 aa0.96□□□□□ -2.26
LINC00643-204ENST00000555934 MAP1AP78559 2803 aaPredicted RBP0.96□□□□□ -2.26
LINC00643-204ENST00000555934 MUC2Q02817 5179 aa0.96□□□□□ -2.26
LINC00643-204ENST00000555934 ITPR1Q14643 2758 aa0.96□□□□□ -2.26
LINC00643-204ENST00000555934 IGSF10Q6WRI0 2623 aa0.95□□□□□ -2.26
LINC00643-204ENST00000555934 PDZD2O15018 2839 aa0.95□□□□□ -2.26
LINC00643-204ENST00000555934 ACANP16112 2415 aa0.95□□□□□ -2.26
LINC00643-204ENST00000555934 DNAH3Q8TD57 4116 aa0.95□□□□□ -2.26
LINC00643-204ENST00000555934 NSD1Q96L73 2696 aaPredicted RBP0.94□□□□□ -2.26
LINC00643-204ENST00000555934 CRYBG3Q68DQ2 2970 aa0.94□□□□□ -2.26
LINC00643-204ENST00000555934 TEX15Q9BXT5 2789 aa0.94□□□□□ -2.26
LINC00643-204ENST00000555934 HUWE1Q7Z6Z7 4374 aaKnown RBP0.94□□□□□ -2.26
LINC00643-204ENST00000555934 VPS13DQ5THJ4 4388 aa0.94□□□□□ -2.26
LINC00643-204ENST00000555934 SPINK6Q6UWN8 80 aa0.93□□□□□ -2.26
LINC00643-204ENST00000555934 RYR3Q15413 4870 aa0.93□□□□□ -2.26
LINC00643-204ENST00000555934 ANK2Q01484 3957 aa0.93□□□□□ -2.26
LINC00643-204ENST00000555934 HIVEP1P15822 2718 aa0.93□□□□□ -2.26
LINC00643-204ENST00000555934 FLNCQ14315 2725 aa0.93□□□□□ -2.26
LINC00643-204ENST00000555934 GCN1Q92616 2671 aaKnown RBP0.92□□□□□ -2.26
LINC00643-204ENST00000555934 TRRAPQ9Y4A5 3859 aa0.92□□□□□ -2.26
LINC00643-204ENST00000555934 KIAA1109Q2LD37 5005 aa0.92□□□□□ -2.26
LINC00643-204ENST00000555934 UTP20O75691 2785 aaKnown RBP0.92□□□□□ -2.26
LINC00643-204ENST00000555934 F8P00451 2351 aa0.92□□□□□ -2.26
LINC00643-204ENST00000555934 SETD2Q9BYW2 2564 aaPredicted RBP0.92□□□□□ -2.26
LINC00643-204ENST00000555934 FASNP49327 2511 aaKnown RBP0.92□□□□□ -2.26
LINC00643-204ENST00000555934 FRAS1Q86XX4 4008 aa0.92□□□□□ -2.26
LINC00643-204ENST00000555934 DYNC2H1Q8NCM8 4307 aaKnown RBP0.91□□□□□ -2.26
LINC00643-204ENST00000555934 RYR1P21817 5038 aa0.91□□□□□ -2.26
LINC00643-204ENST00000555934 NBEAL2Q6ZNJ1 2754 aa0.91□□□□□ -2.26
LINC00643-204ENST00000555934 TEP1Q99973 2627 aaKnown RBP0.9□□□□□ -2.26
LINC00643-204ENST00000555934 OTOGQ6ZRI0 2925 aa0.9□□□□□ -2.26
LINC00643-204ENST00000555934 ATRQ13535 2644 aa0.9□□□□□ -2.27
LINC00643-204ENST00000555934 DNAH6Q9C0G6 4158 aa0.89□□□□□ -2.27
LINC00643-204ENST00000555934 VWFP04275 2813 aa0.89□□□□□ -2.27
LINC00643-204ENST00000555934 NF1P21359 2839 aa0.89□□□□□ -2.27
LINC00643-204ENST00000555934 PRKDCP78527 4128 aaKnown RBP0.89□□□□□ -2.27
LINC00643-204ENST00000555934 DNAH10Q8IVF4 4471 aa0.89□□□□□ -2.27
LINC00643-204ENST00000555934 DNAH7Q8WXX0 4024 aa0.89□□□□□ -2.27
LINC00643-204ENST00000555934 DNAH9Q9NYC9 4486 aa0.89□□□□□ -2.27
LINC00643-204ENST00000555934 BIRC6Q9NR09 4857 aa0.88□□□□□ -2.27
LINC00643-204ENST00000555934 DNAH11Q96DT5 4516 aa0.88□□□□□ -2.27
LINC00643-204ENST00000555934 STAB2Q8WWQ8 2551 aa0.88□□□□□ -2.27
LINC00643-204ENST00000555934 DNAH17Q9UFH2 4485 aa0.88□□□□□ -2.27
LINC00643-204ENST00000555934 M0QZ58 72 aa0.88□□□□□ -2.27
LINC00643-204ENST00000555934 FLNBO75369 2602 aaKnown RBP0.88□□□□□ -2.27
LINC00643-204ENST00000555934 HYDINQ4G0P3 5121 aa0.88□□□□□ -2.27
LINC00643-204ENST00000555934 DNAH8Q96JB1 4490 aa0.88□□□□□ -2.27
LINC00643-204ENST00000555934 ITPR2Q14571 2701 aa0.87□□□□□ -2.27
LINC00643-204ENST00000555934 PKHD1L1Q86WI1 4243 aa0.87□□□□□ -2.27
LINC00643-204ENST00000555934 CENPEQ02224 2701 aa0.87□□□□□ -2.27
LINC00643-204ENST00000555934 CMYA5Q8N3K9 4069 aa0.87□□□□□ -2.27
LINC00643-204ENST00000555934 TENM4Q6N022 2769 aa0.87□□□□□ -2.27
LINC00643-204ENST00000555934 EPPK1P58107 5090 aaKnown RBP0.86□□□□□ -2.27
LINC00643-204ENST00000555934 LYSTQ99698 3801 aa0.86□□□□□ -2.27
LINC00643-204ENST00000555934 STARD9Q9P2P6 4700 aa0.86□□□□□ -2.27
LINC00643-204ENST00000555934 M0R2T5 61 aa0.86□□□□□ -2.27
LINC00643-204ENST00000555934 TENM2Q9NT68 2774 aa0.86□□□□□ -2.27
LINC00643-204ENST00000555934 CSMD3Q7Z407 3707 aa0.86□□□□□ -2.27
LINC00643-204ENST00000555934 MGAM2Q2M2H8 2515 aa0.85□□□□□ -2.27
LINC00643-204ENST00000555934 KMT2AQ03164 3969 aa0.85□□□□□ -2.27
LINC00643-204ENST00000555934 DNAH2Q9P225 4427 aa0.85□□□□□ -2.27
LINC00643-204ENST00000555934 VPS13BQ7Z7G8 4022 aa0.85□□□□□ -2.27
LINC00643-204ENST00000555934 PLECQ15149 4684 aaKnown RBP0.85□□□□□ -2.27
LINC00643-204ENST00000555934 HECTD1Q9ULT8 2610 aa0.85□□□□□ -2.27
LINC00643-204ENST00000555934 SACSQ9NZJ4 4579 aa0.84□□□□□ -2.27
LINC00643-204ENST00000555934 PKD1L1Q8TDX9 2849 aa0.84□□□□□ -2.27
LINC00643-204ENST00000555934 KMT2CQ8NEZ4 4911 aaKnown RBP0.84□□□□□ -2.27
LINC00643-204ENST00000555934 HECTD4Q9Y4D8 3996 aa0.84□□□□□ -2.27
LINC00643-204ENST00000555934 DNAH5Q8TE73 4624 aa0.84□□□□□ -2.28
LINC00643-204ENST00000555934 PKHD1P08F94 4074 aa0.84□□□□□ -2.28
LINC00643-204ENST00000555934 NBEAL1Q6ZS30 2694 aa0.83□□□□□ -2.28
LINC00643-204ENST00000555934 STAB1Q9NY15 2570 aa0.83□□□□□ -2.28
LINC00643-204ENST00000555934 C9orf92A6NGG3 77 aa0.83□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms