RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 VPS13CQ709C8 3753 aa3.71□□□□□ -1.81
SYNE2-220ENST00000555612 COL7A1Q02388 2944 aa3.71□□□□□ -1.82
SYNE2-220ENST00000555612 BSNQ9UPA5 3926 aa3.71□□□□□ -1.82
SYNE2-220ENST00000555612 RYR3Q15413 4870 aa3.69□□□□□ -1.82
SYNE2-220ENST00000555612 KRTAP10-12P60413 245 aa3.68□□□□□ -1.82
SYNE2-220ENST00000555612 TRRAPQ9Y4A5 3859 aa3.65□□□□□ -1.83
SYNE2-220ENST00000555612 DYNC1H1Q14204 4646 aaKnown RBP3.64□□□□□ -1.83
SYNE2-220ENST00000555612 DNAH5Q8TE73 4624 aa3.64□□□□□ -1.83
SYNE2-220ENST00000555612 HUWE1Q7Z6Z7 4374 aaKnown RBP3.63□□□□□ -1.83
SYNE2-220ENST00000555612 ALMS1Q8TCU4 4167 aa3.62□□□□□ -1.83
SYNE2-220ENST00000555612 VPS13DQ5THJ4 4388 aa3.61□□□□□ -1.83
SYNE2-220ENST00000555612 DNAH9Q9NYC9 4486 aa3.61□□□□□ -1.83
SYNE2-220ENST00000555612 LORP23490 312 aaPredicted RBP3.61□□□□□ -1.83
SYNE2-220ENST00000555612 HERC2O95714 4834 aa3.59□□□□□ -1.83
SYNE2-220ENST00000555612 CSMD3Q7Z407 3707 aa3.58□□□□□ -1.84
SYNE2-220ENST00000555612 PCLOQ9Y6V0 5065 aa3.57□□□□□ -1.84
SYNE2-220ENST00000555612 DNAH1Q9P2D7 4330 aa3.57□□□□□ -1.84
SYNE2-220ENST00000555612 ABCA13Q86UQ4 5058 aa3.56□□□□□ -1.84
SYNE2-220ENST00000555612 DNAH17Q9UFH2 4485 aa3.55□□□□□ -1.84
SYNE2-220ENST00000555612 KRTAP12-3P60328 96 aa3.54□□□□□ -1.84
SYNE2-220ENST00000555612 ANK2Q01484 3957 aa3.53□□□□□ -1.84
SYNE2-220ENST00000555612 LRP1BQ9NZR2 4599 aa3.53□□□□□ -1.84
SYNE2-220ENST00000555612 KRTAP23-1A1A580 65 aa3.52□□□□□ -1.85
SYNE2-220ENST00000555612 KRTAP8-1Q8IUC2 63 aa3.52□□□□□ -1.85
SYNE2-220ENST00000555612 AKAP9Q99996 3911 aa3.51□□□□□ -1.85
SYNE2-220ENST00000555612 LCE3AQ5TA76 89 aa3.5□□□□□ -1.85
SYNE2-220ENST00000555612 KRTAP10-7P60409 375 aaPredicted RBP3.49□□□□□ -1.85
SYNE2-220ENST00000555612 STARD9Q9P2P6 4700 aa3.47□□□□□ -1.85
SYNE2-220ENST00000555612 LCE2BO14633 110 aa3.46□□□□□ -1.86
SYNE2-220ENST00000555612 DNAH2Q9P225 4427 aa3.46□□□□□ -1.86
SYNE2-220ENST00000555612 LCE2CQ5TA81 110 aa3.46□□□□□ -1.86
SYNE2-220ENST00000555612 DNAH3Q8TD57 4116 aa3.45□□□□□ -1.86
SYNE2-220ENST00000555612 MT1HP80294 61 aa3.43□□□□□ -1.86
SYNE2-220ENST00000555612 KRTAP4-1Q9BYQ7 146 aa3.43□□□□□ -1.86
SYNE2-220ENST00000555612 SACSQ9NZJ4 4579 aa3.42□□□□□ -1.86
SYNE2-220ENST00000555612 LCE2AQ5TA79 106 aaPredicted RBP3.41□□□□□ -1.86
SYNE2-220ENST00000555612 KMT2CQ8NEZ4 4911 aaKnown RBP3.41□□□□□ -1.86
SYNE2-220ENST00000555612 ZNF469Q96JG9 3925 aaPredicted RBP3.41□□□□□ -1.86
SYNE2-220ENST00000555612 HERC1Q15751 4861 aa3.41□□□□□ -1.86
SYNE2-220ENST00000555612 DYNC2H1Q8NCM8 4307 aaKnown RBP3.4□□□□□ -1.87
SYNE2-220ENST00000555612 APOBP04114 4563 aaKnown RBP3.38□□□□□ -1.87
SYNE2-220ENST00000555612 HMCN2Q8NDA2 5059 aa3.38□□□□□ -1.87
SYNE2-220ENST00000555612 KRTAP10-5P60370 271 aa3.37□□□□□ -1.87
SYNE2-220ENST00000555612 EPPK1P58107 5090 aaKnown RBP3.37□□□□□ -1.87
SYNE2-220ENST00000555612 FAT1Q14517 4588 aa3.37□□□□□ -1.87
SYNE2-220ENST00000555612 MT2AP02795 61 aa3.36□□□□□ -1.87
SYNE2-220ENST00000555612 RNF213Q63HN8 5207 aa3.35□□□□□ -1.87
SYNE2-220ENST00000555612 UBR4Q5T4S7 5183 aa3.34□□□□□ -1.87
SYNE2-220ENST00000555612 INE1O15225 51 aa3.33□□□□□ -1.88
SYNE2-220ENST00000555612 PRKDCP78527 4128 aaKnown RBP3.32□□□□□ -1.88
SYNE2-220ENST00000555612 DNAH8Q96JB1 4490 aa3.32□□□□□ -1.88
SYNE2-220ENST00000555612 SPRR2FQ96RM1 72 aa3.31□□□□□ -1.88
SYNE2-220ENST00000555612 MT1FP04733 61 aa3.28□□□□□ -1.88
SYNE2-220ENST00000555612 HSPG2P98160 4391 aa3.25□□□□□ -1.89
SYNE2-220ENST00000555612 MYCBP2O75592 4640 aa3.25□□□□□ -1.89
SYNE2-220ENST00000555612 SPRR2GQ9BYE4 73 aa3.23□□□□□ -1.89
SYNE2-220ENST00000555612 DNAH6Q9C0G6 4158 aa3.23□□□□□ -1.89
SYNE2-220ENST00000555612 KRTAP19-5Q3LI72 72 aa3.18□□□□□ -1.9
SYNE2-220ENST00000555612 KRTAP17-1Q9BYP8 105 aa3.17□□□□□ -1.9
SYNE2-220ENST00000555612 FAT2Q9NYQ8 4349 aa3.17□□□□□ -1.9
SYNE2-220ENST00000555612 FRAS1Q86XX4 4008 aa3.16□□□□□ -1.9
SYNE2-220ENST00000555612 FAT3Q8TDW7 4589 aa3.14□□□□□ -1.91
SYNE2-220ENST00000555612 SPRR5A0A1B0GTR4 108 aa3.14□□□□□ -1.91
SYNE2-220ENST00000555612 SPRR2EP22531 72 aa3.14□□□□□ -1.91
SYNE2-220ENST00000555612 SPRR2BP35325 72 aa3.14□□□□□ -1.91
SYNE2-220ENST00000555612 SPRR2AP35326 72 aa3.14□□□□□ -1.91
SYNE2-220ENST00000555612 CMYA5Q8N3K9 4069 aa3.14□□□□□ -1.91
SYNE2-220ENST00000555612 DNAH7Q8WXX0 4024 aa3.1□□□□□ -1.91
SYNE2-220ENST00000555612 LRP1Q07954 4544 aaKnown RBP3.08□□□□□ -1.92
SYNE2-220ENST00000555612 LYSTQ99698 3801 aa3.08□□□□□ -1.92
SYNE2-220ENST00000555612 KRTAP19-2Q3LHN2 52 aa3.08□□□□□ -1.92
SYNE2-220ENST00000555612 MUC17Q685J3 4493 aa3.08□□□□□ -1.92
SYNE2-220ENST00000555612 KRTAP19-4Q3LI73 84 aa3.07□□□□□ -1.92
SYNE2-220ENST00000555612 LCE3CQ5T5A8 94 aa3.06□□□□□ -1.92
SYNE2-220ENST00000555612 PKD1P98161 4303 aa3.05□□□□□ -1.92
SYNE2-220ENST00000555612 SPRR2DP22532 72 aa3.04□□□□□ -1.92
SYNE2-220ENST00000555612 PKHD1P08F94 4074 aa3.03□□□□□ -1.92
SYNE2-220ENST00000555612 VPS13BQ7Z7G8 4022 aa3.03□□□□□ -1.92
SYNE2-220ENST00000555612 LRP2P98164 4655 aa3.02□□□□□ -1.93
SYNE2-220ENST00000555612 KMT2AQ03164 3969 aa3.01□□□□□ -1.93
SYNE2-220ENST00000555612 KRTAP19-8Q3LI54 63 aa3□□□□□ -1.93
SYNE2-220ENST00000555612 FAT4Q6V0I7 4981 aa3□□□□□ -1.93
SYNE2-220ENST00000555612 KRTAP19-1Q8IUB9 90 aa3□□□□□ -1.93
SYNE2-220ENST00000555612 USH2AO75445 5202 aa2.96□□□□□ -1.94
SYNE2-220ENST00000555612 MT1XP80297 61 aa2.95□□□□□ -1.94
SYNE2-220ENST00000555612 HECTD4Q9Y4D8 3996 aa2.94□□□□□ -1.94
SYNE2-220ENST00000555612 LCE3BQ5TA77 95 aa2.94□□□□□ -1.94
SYNE2-220ENST00000555612 KRTAP9-8Q9BYQ0 159 aa2.94□□□□□ -1.94
SYNE2-220ENST00000555612 MT1BP07438 61 aa2.93□□□□□ -1.94
SYNE2-220ENST00000555612 MT1GP13640 62 aa2.93□□□□□ -1.94
SYNE2-220ENST00000555612 KRTAP4-8A0A0G2JLE6 195 aa2.91□□□□□ -1.94
SYNE2-220ENST00000555612 KRTAP4-8Q9BYQ9 185 aa2.91□□□□□ -1.94
SYNE2-220ENST00000555612 KRTAP12-4P60329 112 aa2.9□□□□□ -1.95
SYNE2-220ENST00000555612 KRTAP9-3Q9BYQ3 159 aa2.88□□□□□ -1.95
SYNE2-220ENST00000555612 PKHD1L1Q86WI1 4243 aa2.85□□□□□ -1.95
SYNE2-220ENST00000555612 KRTAP9-6A0A140TA67 174 aa2.8□□□□□ -1.96
SYNE2-220ENST00000555612 KRTAP9-2Q9BYQ4 174 aa2.79□□□□□ -1.96
SYNE2-220ENST00000555612 TNXBP22105 4242 aa2.76□□□□□ -1.97
SYNE2-220ENST00000555612 KRTAP19-3Q7Z4W3 81 aa2.75□□□□□ -1.97
SYNE2-220ENST00000555612 SSPOA2VEC9 5147 aa2.74□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 138.4 ms