RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 PRO2289Q9P1D8 64 aa2.66□□□□□ -1.98
LIMA1-204ENST00000549064 SNCGO76070 127 aa2.65□□□□□ -1.99
LIMA1-204ENST00000549064 CSAG1Q6PB30 78 aa2.65□□□□□ -1.99
LIMA1-204ENST00000549064 A0A1B0GW54 56 aa2.64□□□□□ -1.99
LIMA1-204ENST00000549064 H3BPC8 53 aa2.64□□□□□ -1.99
LIMA1-204ENST00000549064 KRTDAPP60985 99 aa2.64□□□□□ -1.99
LIMA1-204ENST00000549064 KRTAP5-10Q6L8G5 202 aa2.64□□□□□ -1.99
LIMA1-204ENST00000549064 VPS25Q9BRG1 176 aa2.64□□□□□ -1.99
LIMA1-204ENST00000549064 S4R3F8 94 aa2.64□□□□□ -1.99
LIMA1-204ENST00000549064 H0YGX0 51 aa2.63□□□□□ -1.99
LIMA1-204ENST00000549064 P0C880 135 aa2.63□□□□□ -1.99
LIMA1-204ENST00000549064 NDUFA5Q16718 116 aa2.63□□□□□ -1.99
LIMA1-204ENST00000549064 PRR15Q8IV56 129 aa2.63□□□□□ -1.99
LIMA1-204ENST00000549064 LCE3DQ9BYE3 92 aa2.63□□□□□ -1.99
LIMA1-204ENST00000549064 AHNAK2Q8IVF2 5795 aa2.62□□□□□ -1.99
LIMA1-204ENST00000549064 J3KT08 172 aa2.62□□□□□ -1.99
LIMA1-204ENST00000549064 NDUFB1O75438 58 aa2.62□□□□□ -1.99
LIMA1-204ENST00000549064 C7orf65Q6ZTY9 151 aa2.62□□□□□ -1.99
LIMA1-204ENST00000549064 CRIPTQ9P021 101 aa2.6□□□□□ -1.99
LIMA1-204ENST00000549064 HMCN1Q96RW7 5635 aa2.59□□□□□ -1.99
LIMA1-204ENST00000549064 A0A1B0GX51 115 aa2.59□□□□□ -1.99
LIMA1-204ENST00000549064 H3BT86 120 aa2.59□□□□□ -1.99
LIMA1-204ENST00000549064 HIST1H2BKO60814 126 aa2.59□□□□□ -1.99
LIMA1-204ENST00000549064 HIST1H2BJP06899 126 aa2.59□□□□□ -1.99
LIMA1-204ENST00000549064 HIST1H2BOP23527 126 aa2.59□□□□□ -1.99
LIMA1-204ENST00000549064 HIST1H2BBP33778 126 aa2.59□□□□□ -1.99
LIMA1-204ENST00000549064 MT4P47944 62 aa2.59□□□□□ -1.99
LIMA1-204ENST00000549064 HIST1H2BDP58876 126 aa2.59□□□□□ -1.99
LIMA1-204ENST00000549064 HIST1H2BCP62807 126 aa2.59□□□□□ -1.99
LIMA1-204ENST00000549064 HIST2H2BEQ16778 126 aa2.59□□□□□ -1.99
LIMA1-204ENST00000549064 HIST2H2BFQ5QNW6 126 aaPredicted RBP2.59□□□□□ -1.99
LIMA1-204ENST00000549064 HIST1H2BHQ93079 126 aa2.59□□□□□ -1.99
LIMA1-204ENST00000549064 HIST1H2BNQ99877 126 aa2.59□□□□□ -1.99
LIMA1-204ENST00000549064 HIST1H2BMQ99879 126 aa2.59□□□□□ -1.99
LIMA1-204ENST00000549064 MRPL34Q9BQ48 92 aaKnown RBP2.59□□□□□ -1.99
LIMA1-204ENST00000549064 MMP24-AS1A0A0U1RRL7 71 aa2.58□□□□□ -2
LIMA1-204ENST00000549064 TMEM254Q8TBM7 123 aa2.58□□□□□ -2
LIMA1-204ENST00000549064 ORMDL1Q9P0S3 153 aa2.58□□□□□ -2
LIMA1-204ENST00000549064 KRTAP5-7Q6L8G8 165 aa2.57□□□□□ -2
LIMA1-204ENST00000549064 Q6ZQT0 140 aa2.56□□□□□ -2
LIMA1-204ENST00000549064 K7EQZ3 153 aa2.55□□□□□ -2
LIMA1-204ENST00000549064 TMEM256-PLSCR3K7ERE1 68 aa2.55□□□□□ -2
LIMA1-204ENST00000549064 DNAL4O96015 105 aa2.55□□□□□ -2
LIMA1-204ENST00000549064 PLAC4Q8WY50 150 aa2.55□□□□□ -2
LIMA1-204ENST00000549064 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.54□□□□□ -2
LIMA1-204ENST00000549064 hDV103S1A0JD37 113 aa2.53□□□□□ -2
LIMA1-204ENST00000549064 HIST1H4AP62805 103 aaKnown RBP2.52□□□□□ -2.01
LIMA1-204ENST00000549064 TRAV7A0A075B6U4 112 aa2.51□□□□□ -2.01
LIMA1-204ENST00000549064 A0A087WVE0 104 aa2.51□□□□□ -2.01
LIMA1-204ENST00000549064 C9JAW5 83 aa2.5□□□□□ -2.01
LIMA1-204ENST00000549064 SMIM20Q8N5G0 67 aa2.5□□□□□ -2.01
LIMA1-204ENST00000549064 PRO1854Q9UHT4 67 aa2.5□□□□□ -2.01
LIMA1-204ENST00000549064 PDE6GP18545 87 aa2.49□□□□□ -2.01
LIMA1-204ENST00000549064 LOC105371267A0A1B0GV96 52 aa2.48□□□□□ -2.01
LIMA1-204ENST00000549064 HCG22E2RYF7 251 aa2.48□□□□□ -2.01
LIMA1-204ENST00000549064 COX8AP10176 69 aa2.47□□□□□ -2.01
LIMA1-204ENST00000549064 TMEM258P61165 79 aa2.47□□□□□ -2.01
LIMA1-204ENST00000549064 FXYD2P54710 66 aa2.45□□□□□ -2.02
LIMA1-204ENST00000549064 KRTAP19-3Q7Z4W3 81 aa2.45□□□□□ -2.02
LIMA1-204ENST00000549064 KTN1-AS1Q86SY8 53 aa2.45□□□□□ -2.02
LIMA1-204ENST00000549064 H0YAA0 97 aa2.44□□□□□ -2.02
LIMA1-204ENST00000549064 NREPQ16612 68 aa2.44□□□□□ -2.02
LIMA1-204ENST00000549064 C14orf144Q96I85 54 aa2.44□□□□□ -2.02
LIMA1-204ENST00000549064 CYSTM1Q9H1C7 97 aa2.44□□□□□ -2.02
LIMA1-204ENST00000549064 HIGD1BQ9P298 99 aa2.44□□□□□ -2.02
LIMA1-204ENST00000549064 K7ERJ3 54 aa2.43□□□□□ -2.02
LIMA1-204ENST00000549064 DLEU1O43261 78 aa2.43□□□□□ -2.02
LIMA1-204ENST00000549064 LINC01554Q52M75 96 aa2.43□□□□□ -2.02
LIMA1-204ENST00000549064 HIST3H2BBQ8N257 126 aa2.43□□□□□ -2.02
LIMA1-204ENST00000549064 COX6CP09669 75 aa2.42□□□□□ -2.02
LIMA1-204ENST00000549064 BAALC-AS2P0C853 105 aa2.42□□□□□ -2.02
LIMA1-204ENST00000549064 KRTAP19-7Q3SYF9 63 aa2.42□□□□□ -2.02
LIMA1-204ENST00000549064 CASC2Q6XLA1 102 aa2.42□□□□□ -2.02
LIMA1-204ENST00000549064 LOC110117498A0A087WWA1 95 aa2.41□□□□□ -2.02
LIMA1-204ENST00000549064 MT1EP04732 61 aa2.41□□□□□ -2.02
LIMA1-204ENST00000549064 KRTAP5-4Q6L8H1 288 aa2.41□□□□□ -2.02
LIMA1-204ENST00000549064 HIST1H2BLQ99880 126 aa2.41□□□□□ -2.02
LIMA1-204ENST00000549064 C14orf132Q9NPU4 83 aa2.4□□□□□ -2.03
LIMA1-204ENST00000549064 M0QZ58 72 aa2.38□□□□□ -2.03
LIMA1-204ENST00000549064 LCE3AQ5TA76 89 aa2.38□□□□□ -2.03
LIMA1-204ENST00000549064 PP632Q6XCG6 107 aa2.38□□□□□ -2.03
LIMA1-204ENST00000549064 JMJD7-PLA2G4BH0Y9G9 81 aa2.37□□□□□ -2.03
LIMA1-204ENST00000549064 TAX1BP3O14907 124 aa2.37□□□□□ -2.03
LIMA1-204ENST00000549064 NDUFC1O43677 76 aa2.37□□□□□ -2.03
LIMA1-204ENST00000549064 SPATA45Q537H7 98 aa2.36□□□□□ -2.03
LIMA1-204ENST00000549064 K7EP34 96 aa2.35□□□□□ -2.03
LIMA1-204ENST00000549064 MT1GP13640 62 aa2.34□□□□□ -2.03
LIMA1-204ENST00000549064 KRTAP20-2Q3LI61 65 aa2.32□□□□□ -2.04
LIMA1-204ENST00000549064 MT1MQ8N339 61 aa2.32□□□□□ -2.04
LIMA1-204ENST00000549064 KRTAP4-3Q9BYR4 195 aa2.32□□□□□ -2.04
LIMA1-204ENST00000549064 CYP4F30PQ9H0H9 118 aa2.32□□□□□ -2.04
LIMA1-204ENST00000549064 SCGB1A1P11684 91 aa2.31□□□□□ -2.04
LIMA1-204ENST00000549064 HSD52Q0P140 79 aa2.31□□□□□ -2.04
LIMA1-204ENST00000549064 ATXN8Q156A1 80 aa2.31□□□□□ -2.04
LIMA1-204ENST00000549064 S100A1P23297 94 aa2.3□□□□□ -2.04
LIMA1-204ENST00000549064 TSTD3H0UI37 97 aa2.29□□□□□ -2.04
LIMA1-204ENST00000549064 VAMP8Q9BV40 100 aa2.29□□□□□ -2.04
LIMA1-204ENST00000549064 C20orf197Q8N268 126 aa2.27□□□□□ -2.05
LIMA1-204ENST00000549064 NAA38Q9BRA0 125 aaKnown RBP2.27□□□□□ -2.05
LIMA1-204ENST00000549064 Q1T7F1 81 aa2.26□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms