RNA–Protein interactions for RNA: ENST00000548938.5

HDAC7-228, Transcript of histone deacetylase 7, humanhuman

TSL 5

Gene HDAC7, Length 2,719 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC7-228ENST00000548938 CRIPTQ9P021 101 aa7.25□□□□□ -1.25
HDAC7-228ENST00000548938 HSPG2P98160 4391 aa7.22□□□□□ -1.25
HDAC7-228ENST00000548938 P0C880 135 aa7.21□□□□□ -1.26
HDAC7-228ENST00000548938 K7ERS5 55 aa7.2□□□□□ -1.26
HDAC7-228ENST00000548938 Q5VSD8 79 aa7.14□□□□□ -1.27
HDAC7-228ENST00000548938 KRTAP17-1Q9BYP8 105 aa7.13□□□□□ -1.27
HDAC7-228ENST00000548938 RYR1P21817 5038 aa7.12□□□□□ -1.27
HDAC7-228ENST00000548938 LRP1Q07954 4544 aaKnown RBP7.11□□□□□ -1.27
HDAC7-228ENST00000548938 KRTAP10-6P60371 365 aaPredicted RBP7.11□□□□□ -1.27
HDAC7-228ENST00000548938 KIAA1109Q2LD37 5005 aa7.1□□□□□ -1.27
HDAC7-228ENST00000548938 KRTAP13-4Q3LI77 160 aa7.1□□□□□ -1.27
HDAC7-228ENST00000548938 KRTAP3-3Q9BYR6 98 aa7.08□□□□□ -1.28
HDAC7-228ENST00000548938 DMBT1Q9UGM3 2413 aaPredicted RBP7.08□□□□□ -1.28
HDAC7-228ENST00000548938 EPPK1P58107 5090 aaKnown RBP7.08□□□□□ -1.28
HDAC7-228ENST00000548938 A0A0D9SG42 100 aa7.07□□□□□ -1.28
HDAC7-228ENST00000548938 RPL37P61927 97 aaKnown RBP7.07□□□□□ -1.28
HDAC7-228ENST00000548938 FAT3Q8TDW7 4589 aa7.06□□□□□ -1.28
HDAC7-228ENST00000548938 TNXBP22105 4242 aa7.06□□□□□ -1.28
HDAC7-228ENST00000548938 KRTAP3-2Q9BYR7 98 aa7.04□□□□□ -1.28
HDAC7-228ENST00000548938 KRTAP10-8P60410 259 aa7.03□□□□□ -1.28
HDAC7-228ENST00000548938 MYCBP2O75592 4640 aa7□□□□□ -1.29
HDAC7-228ENST00000548938 TPRXLQ17RH7 258 aa6.99□□□□□ -1.29
HDAC7-228ENST00000548938 S4R3F8 94 aa6.97□□□□□ -1.29
HDAC7-228ENST00000548938 C10orf95Q9H7T3 257 aa6.95□□□□□ -1.3
HDAC7-228ENST00000548938 MT1HL1P0DM35 61 aa6.92□□□□□ -1.3
HDAC7-228ENST00000548938 SPINT4Q6UDR6 99 aa6.91□□□□□ -1.3
HDAC7-228ENST00000548938 NDUFAF8A1L188 74 aa6.91□□□□□ -1.3
HDAC7-228ENST00000548938 XP32Q5T750 250 aa6.89□□□□□ -1.31
HDAC7-228ENST00000548938 KRTAP12-2P59991 146 aa6.88□□□□□ -1.31
HDAC7-228ENST00000548938 KRTAP4-5Q9BYR2 181 aa6.87□□□□□ -1.31
HDAC7-228ENST00000548938 KRTAP12-1P59990 96 aa6.8□□□□□ -1.32
HDAC7-228ENST00000548938 KRTAP15-1Q3LI76 137 aa6.8□□□□□ -1.32
HDAC7-228ENST00000548938 LPAP08519 4548 aa6.75□□□□□ -1.33
HDAC7-228ENST00000548938 ABCA13Q86UQ4 5058 aa6.7□□□□□ -1.34
HDAC7-228ENST00000548938 LUZP6Q538Z0 58 aa6.67□□□□□ -1.34
HDAC7-228ENST00000548938 HERC2O95714 4834 aa6.66□□□□□ -1.34
HDAC7-228ENST00000548938 LRP2P98164 4655 aa6.66□□□□□ -1.34
HDAC7-228ENST00000548938 BIRC6Q9NR09 4857 aa6.66□□□□□ -1.34
HDAC7-228ENST00000548938 M0QZ58 72 aa6.65□□□□□ -1.35
HDAC7-228ENST00000548938 J3QL48 77 aa6.59□□□□□ -1.35
HDAC7-228ENST00000548938 R4GN34 69 aa6.48□□□□□ -1.37
HDAC7-228ENST00000548938 PCLOQ9Y6V0 5065 aa6.48□□□□□ -1.37
HDAC7-228ENST00000548938 SEC61BP60468 96 aaKnown RBP6.48□□□□□ -1.37
HDAC7-228ENST00000548938 HERC1Q15751 4861 aa6.41□□□□□ -1.38
HDAC7-228ENST00000548938 LORP23490 312 aaPredicted RBP6.41□□□□□ -1.38
HDAC7-228ENST00000548938 PLAC4Q8WY50 150 aa6.35□□□□□ -1.39
HDAC7-228ENST00000548938 MUC17Q685J3 4493 aa6.34□□□□□ -1.39
HDAC7-228ENST00000548938 KRTAP4-1Q9BYQ7 146 aa6.33□□□□□ -1.4
HDAC7-228ENST00000548938 MUC2Q02817 5179 aa6.31□□□□□ -1.4
HDAC7-228ENST00000548938 HMCN2Q8NDA2 5059 aa6.26□□□□□ -1.41
HDAC7-228ENST00000548938 CAMK2N1Q7Z7J9 78 aa6.19□□□□□ -1.42
HDAC7-228ENST00000548938 KRTAP19-2Q3LHN2 52 aa6.17□□□□□ -1.42
HDAC7-228ENST00000548938 PP632Q6XCG6 107 aa6.16□□□□□ -1.42
HDAC7-228ENST00000548938 RNF213Q63HN8 5207 aa6.04□□□□□ -1.44
HDAC7-228ENST00000548938 UBR4Q5T4S7 5183 aa6.03□□□□□ -1.44
HDAC7-228ENST00000548938 FLGP20930 4061 aaPredicted RBP6.03□□□□□ -1.44
HDAC7-228ENST00000548938 FAT4Q6V0I7 4981 aa6□□□□□ -1.45
HDAC7-228ENST00000548938 TNP1P09430 55 aa5.96□□□□□ -1.46
HDAC7-228ENST00000548938 LCE2CQ5TA81 110 aa5.95□□□□□ -1.46
HDAC7-228ENST00000548938 KRTAP23-1A1A580 65 aa5.87□□□□□ -1.47
HDAC7-228ENST00000548938 SPRR5A0A1B0GTR4 108 aa5.87□□□□□ -1.47
HDAC7-228ENST00000548938 PRO2289Q9P1D8 64 aa5.81□□□□□ -1.48
HDAC7-228ENST00000548938 MT1HP80294 61 aa5.8□□□□□ -1.48
HDAC7-228ENST00000548938 M0R2T5 61 aa5.76□□□□□ -1.49
HDAC7-228ENST00000548938 SPRR2GQ9BYE4 73 aa5.7□□□□□ -1.5
HDAC7-228ENST00000548938 KRTAP19-1Q8IUB9 90 aa5.69□□□□□ -1.5
HDAC7-228ENST00000548938 LCE3AQ5TA76 89 aa5.67□□□□□ -1.5
HDAC7-228ENST00000548938 KRTAP9-8Q9BYQ0 159 aa5.62□□□□□ -1.51
HDAC7-228ENST00000548938 MT2AP02795 61 aa5.62□□□□□ -1.51
HDAC7-228ENST00000548938 MT1FP04733 61 aa5.61□□□□□ -1.51
HDAC7-228ENST00000548938 KRTAP10-10P60014 251 aa5.58□□□□□ -1.52
HDAC7-228ENST00000548938 INE1O15225 51 aa5.54□□□□□ -1.52
HDAC7-228ENST00000548938 KRTAP8-1Q8IUC2 63 aa5.48□□□□□ -1.53
HDAC7-228ENST00000548938 LCE2AQ5TA79 106 aaPredicted RBP5.44□□□□□ -1.54
HDAC7-228ENST00000548938 KRTAP9-3Q9BYQ3 159 aa5.41□□□□□ -1.54
HDAC7-228ENST00000548938 KRTAP10-5P60370 271 aa5.4□□□□□ -1.55
HDAC7-228ENST00000548938 KRTAP19-8Q3LI54 63 aa5.4□□□□□ -1.55
HDAC7-228ENST00000548938 MT1XP80297 61 aa5.39□□□□□ -1.55
HDAC7-228ENST00000548938 MT1BP07438 61 aa5.37□□□□□ -1.55
HDAC7-228ENST00000548938 KRTAP12-3P60328 96 aa5.36□□□□□ -1.55
HDAC7-228ENST00000548938 KRTAP10-12P60413 245 aa5.34□□□□□ -1.55
HDAC7-228ENST00000548938 KRTAP10-7P60409 375 aaPredicted RBP5.27□□□□□ -1.57
HDAC7-228ENST00000548938 USH2AO75445 5202 aa5.27□□□□□ -1.57
HDAC7-228ENST00000548938 LCE2BO14633 110 aa5.25□□□□□ -1.57
HDAC7-228ENST00000548938 KMT2DO14686 5537 aa5.13□□□□□ -1.59
HDAC7-228ENST00000548938 KRTAP19-5Q3LI72 72 aa5.08□□□□□ -1.6
HDAC7-228ENST00000548938 LCE3CQ5T5A8 94 aa5.05□□□□□ -1.6
HDAC7-228ENST00000548938 FSIP2Q5CZC0 6907 aa5.04□□□□□ -1.6
HDAC7-228ENST00000548938 KRTAP9-6A8MVA2 160 aa4.95□□□□□ -1.62
HDAC7-228ENST00000548938 KRTAP4-8A0A0G2JLE6 195 aa4.91□□□□□ -1.62
HDAC7-228ENST00000548938 KRTAP4-8Q9BYQ9 185 aa4.91□□□□□ -1.62
HDAC7-228ENST00000548938 SSPOA2VEC9 5147 aa4.9□□□□□ -1.62
HDAC7-228ENST00000548938 KRTAP19-6Q3LI70 58 aa4.83□□□□□ -1.64
HDAC7-228ENST00000548938 KRTAP4-7Q9BYR0 210 aa4.82□□□□□ -1.64
HDAC7-228ENST00000548938 LCE2DQ5TA82 110 aaPredicted RBP4.82□□□□□ -1.64
HDAC7-228ENST00000548938 KRTAP2-3P0C7H8 128 aa4.8□□□□□ -1.64
HDAC7-228ENST00000548938 KRTAP2-4Q9BYR9 128 aa4.8□□□□□ -1.64
HDAC7-228ENST00000548938 KRTAP2-1Q9BYU5 128 aa4.8□□□□□ -1.64
HDAC7-228ENST00000548938 KRTAP19-7Q3SYF9 63 aa4.8□□□□□ -1.64
HDAC7-228ENST00000548938 FCGBPQ9Y6R7 5405 aaPredicted RBP4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 99.3 ms