RNA–Protein interactions for RNA: ENST00000548825.6

PRPF40B-209, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

APPRIS P2 TSL 5 BASIC

Gene PRPF40B, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-209ENST00000548825 RYR3Q15413 4870 aa7.19□□□□□ -1.26
PRPF40B-209ENST00000548825 COX6B2Q6YFQ2 88 aa7.18□□□□□ -1.26
PRPF40B-209ENST00000548825 HSPG2P98160 4391 aa7.17□□□□□ -1.26
PRPF40B-209ENST00000548825 KRTAP21-3Q3LHN1 58 aa7.16□□□□□ -1.26
PRPF40B-209ENST00000548825 PKHD1L1Q86WI1 4243 aa7.15□□□□□ -1.26
PRPF40B-209ENST00000548825 RYR1P21817 5038 aa7.13□□□□□ -1.27
PRPF40B-209ENST00000548825 KRTAP10-8P60410 259 aa7.13□□□□□ -1.27
PRPF40B-209ENST00000548825 H1FX-AS1Q4G0G2 97 aa7.13□□□□□ -1.27
PRPF40B-209ENST00000548825 KRTAP17-1Q9BYP8 105 aa7.1□□□□□ -1.27
PRPF40B-209ENST00000548825 XP32Q5T750 250 aa7.09□□□□□ -1.27
PRPF40B-209ENST00000548825 K7ERS5 55 aa7.08□□□□□ -1.28
PRPF40B-209ENST00000548825 LRP2P98164 4655 aa7.06□□□□□ -1.28
PRPF40B-209ENST00000548825 RPL37P61927 97 aaKnown RBP7.04□□□□□ -1.28
PRPF40B-209ENST00000548825 S4R3F8 94 aa7.04□□□□□ -1.28
PRPF40B-209ENST00000548825 LPAP08519 4548 aa7.03□□□□□ -1.28
PRPF40B-209ENST00000548825 SPINT4Q6UDR6 99 aa6.98□□□□□ -1.29
PRPF40B-209ENST00000548825 P0C880 135 aa6.98□□□□□ -1.29
PRPF40B-209ENST00000548825 EPPK1P58107 5090 aaKnown RBP6.97□□□□□ -1.29
PRPF40B-209ENST00000548825 TNXBP22105 4242 aa6.95□□□□□ -1.3
PRPF40B-209ENST00000548825 KRTAP13-4Q3LI77 160 aa6.94□□□□□ -1.3
PRPF40B-209ENST00000548825 KRTAP4-5Q9BYR2 181 aa6.92□□□□□ -1.3
PRPF40B-209ENST00000548825 KRTAP3-3Q9BYR6 98 aa6.91□□□□□ -1.3
PRPF40B-209ENST00000548825 MT1HL1P0DM35 61 aa6.9□□□□□ -1.3
PRPF40B-209ENST00000548825 ABCA13Q86UQ4 5058 aa6.9□□□□□ -1.3
PRPF40B-209ENST00000548825 KRTAP10-6P60371 365 aaPredicted RBP6.88□□□□□ -1.31
PRPF40B-209ENST00000548825 J3QL48 77 aa6.85□□□□□ -1.31
PRPF40B-209ENST00000548825 C10orf95Q9H7T3 257 aa6.84□□□□□ -1.31
PRPF40B-209ENST00000548825 KRTAP25-1Q3LHN0 102 aa6.81□□□□□ -1.32
PRPF40B-209ENST00000548825 KRTAP3-2Q9BYR7 98 aa6.79□□□□□ -1.32
PRPF40B-209ENST00000548825 ROMO1P60602 79 aa6.78□□□□□ -1.32
PRPF40B-209ENST00000548825 MUC2Q02817 5179 aa6.76□□□□□ -1.33
PRPF40B-209ENST00000548825 KRTAP12-2P59991 146 aa6.73□□□□□ -1.33
PRPF40B-209ENST00000548825 M0QZ58 72 aa6.72□□□□□ -1.33
PRPF40B-209ENST00000548825 R4GN34 69 aa6.68□□□□□ -1.34
PRPF40B-209ENST00000548825 TPRXLQ17RH7 258 aa6.68□□□□□ -1.34
PRPF40B-209ENST00000548825 HERC2O95714 4834 aa6.66□□□□□ -1.34
PRPF40B-209ENST00000548825 SEC61BP60468 96 aaKnown RBP6.6□□□□□ -1.35
PRPF40B-209ENST00000548825 KRTAP12-1P59990 96 aa6.59□□□□□ -1.35
PRPF40B-209ENST00000548825 LORP23490 312 aaPredicted RBP6.54□□□□□ -1.36
PRPF40B-209ENST00000548825 KRTAP4-1Q9BYQ7 146 aa6.54□□□□□ -1.36
PRPF40B-209ENST00000548825 NDUFAF8A1L188 74 aa6.51□□□□□ -1.37
PRPF40B-209ENST00000548825 HERC1Q15751 4861 aa6.5□□□□□ -1.37
PRPF40B-209ENST00000548825 CAMK2N1Q7Z7J9 78 aa6.45□□□□□ -1.38
PRPF40B-209ENST00000548825 FAT4Q6V0I7 4981 aa6.43□□□□□ -1.38
PRPF40B-209ENST00000548825 LUZP6Q538Z0 58 aa6.42□□□□□ -1.38
PRPF40B-209ENST00000548825 RNF213Q63HN8 5207 aa6.38□□□□□ -1.39
PRPF40B-209ENST00000548825 M0R2T5 61 aa6.33□□□□□ -1.4
PRPF40B-209ENST00000548825 MUC17Q685J3 4493 aa6.3□□□□□ -1.4
PRPF40B-209ENST00000548825 PCLOQ9Y6V0 5065 aa6.29□□□□□ -1.4
PRPF40B-209ENST00000548825 UBR4Q5T4S7 5183 aa6.18□□□□□ -1.42
PRPF40B-209ENST00000548825 BIRC6Q9NR09 4857 aa6.17□□□□□ -1.42
PRPF40B-209ENST00000548825 KRTAP15-1Q3LI76 137 aa6.1□□□□□ -1.43
PRPF40B-209ENST00000548825 KRTAP19-2Q3LHN2 52 aa6.08□□□□□ -1.44
PRPF40B-209ENST00000548825 PLAC4Q8WY50 150 aa6.07□□□□□ -1.44
PRPF40B-209ENST00000548825 HMCN2Q8NDA2 5059 aa6.06□□□□□ -1.44
PRPF40B-209ENST00000548825 FLGP20930 4061 aaPredicted RBP6.05□□□□□ -1.44
PRPF40B-209ENST00000548825 KRTAP10-10P60014 251 aa5.99□□□□□ -1.45
PRPF40B-209ENST00000548825 TNP1P09430 55 aa5.97□□□□□ -1.45
PRPF40B-209ENST00000548825 LCE2CQ5TA81 110 aa5.86□□□□□ -1.47
PRPF40B-209ENST00000548825 PP632Q6XCG6 107 aa5.82□□□□□ -1.48
PRPF40B-209ENST00000548825 MT1HP80294 61 aa5.81□□□□□ -1.48
PRPF40B-209ENST00000548825 MT1FP04733 61 aa5.77□□□□□ -1.48
PRPF40B-209ENST00000548825 KRTAP19-1Q8IUB9 90 aa5.77□□□□□ -1.49
PRPF40B-209ENST00000548825 MT2AP02795 61 aa5.73□□□□□ -1.49
PRPF40B-209ENST00000548825 USH2AO75445 5202 aa5.72□□□□□ -1.49
PRPF40B-209ENST00000548825 LCE3AQ5TA76 89 aa5.68□□□□□ -1.5
PRPF40B-209ENST00000548825 SPRR2GQ9BYE4 73 aa5.66□□□□□ -1.5
PRPF40B-209ENST00000548825 FSIP2Q5CZC0 6907 aa5.64□□□□□ -1.51
PRPF40B-209ENST00000548825 KRTAP9-8Q9BYQ0 159 aa5.6□□□□□ -1.51
PRPF40B-209ENST00000548825 KMT2DO14686 5537 aa5.56□□□□□ -1.52
PRPF40B-209ENST00000548825 MT1BP07438 61 aa5.46□□□□□ -1.54
PRPF40B-209ENST00000548825 KRTAP10-12P60413 245 aa5.44□□□□□ -1.54
PRPF40B-209ENST00000548825 KRTAP10-7P60409 375 aaPredicted RBP5.43□□□□□ -1.54
PRPF40B-209ENST00000548825 MT1XP80297 61 aa5.43□□□□□ -1.54
PRPF40B-209ENST00000548825 KRTAP10-5P60370 271 aa5.43□□□□□ -1.54
PRPF40B-209ENST00000548825 KRTAP12-3P60328 96 aa5.38□□□□□ -1.55
PRPF40B-209ENST00000548825 KRTAP19-8Q3LI54 63 aa5.35□□□□□ -1.55
PRPF40B-209ENST00000548825 KRTAP23-1A1A580 65 aa5.35□□□□□ -1.55
PRPF40B-209ENST00000548825 KRTAP9-3Q9BYQ3 159 aa5.34□□□□□ -1.55
PRPF40B-209ENST00000548825 PRO2289Q9P1D8 64 aa5.31□□□□□ -1.56
PRPF40B-209ENST00000548825 LCE2BO14633 110 aa5.26□□□□□ -1.57
PRPF40B-209ENST00000548825 KRTAP8-1Q8IUC2 63 aa5.26□□□□□ -1.57
PRPF40B-209ENST00000548825 KRTAP4-8A0A0G2JLE6 195 aa5.25□□□□□ -1.57
PRPF40B-209ENST00000548825 KRTAP4-8Q9BYQ9 185 aa5.25□□□□□ -1.57
PRPF40B-209ENST00000548825 SPRR5A0A1B0GTR4 108 aa5.22□□□□□ -1.57
PRPF40B-209ENST00000548825 KRTAP19-5Q3LI72 72 aa5.19□□□□□ -1.58
PRPF40B-209ENST00000548825 KRTAP4-7Q9BYR0 210 aa5.06□□□□□ -1.6
PRPF40B-209ENST00000548825 DSTQ03001 7570 aaKnown RBP5.05□□□□□ -1.6
PRPF40B-209ENST00000548825 LCE2AQ5TA79 106 aaPredicted RBP4.99□□□□□ -1.61
PRPF40B-209ENST00000548825 SSPOA2VEC9 5147 aa4.97□□□□□ -1.61
PRPF40B-209ENST00000548825 LCE3CQ5T5A8 94 aa4.96□□□□□ -1.62
PRPF40B-209ENST00000548825 MUC12Q9UKN1 5478 aa4.94□□□□□ -1.62
PRPF40B-209ENST00000548825 CRCT1Q9UGL9 99 aa4.91□□□□□ -1.62
PRPF40B-209ENST00000548825 FCGBPQ9Y6R7 5405 aaPredicted RBP4.89□□□□□ -1.63
PRPF40B-209ENST00000548825 INE1O15225 51 aa4.85□□□□□ -1.63
PRPF40B-209ENST00000548825 KRTAP9-6A8MVA2 160 aa4.84□□□□□ -1.63
PRPF40B-209ENST00000548825 OBSCNQ5VST9 7968 aa4.82□□□□□ -1.64
PRPF40B-209ENST00000548825 KRTAP19-7Q3SYF9 63 aa4.82□□□□□ -1.64
PRPF40B-209ENST00000548825 SYNE1Q8NF91 8797 aaKnown RBP4.79□□□□□ -1.64
PRPF40B-209ENST00000548825 KRTAP4-3Q9BYR4 195 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms