RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 C8orf17Q9NRJ1 99 aa4.88□□□□□ -1.63
VPS29-203ENST00000546588 TNXBP22105 4242 aa4.86□□□□□ -1.63
VPS29-203ENST00000546588 A8MU10 97 aa4.86□□□□□ -1.63
VPS29-203ENST00000546588 A0A087WSZ3 146 aa4.85□□□□□ -1.63
VPS29-203ENST00000546588 A0A0G2JQZ4 141 aa4.85□□□□□ -1.63
VPS29-203ENST00000546588 Q96NJ1 140 aa4.85□□□□□ -1.63
VPS29-203ENST00000546588 LINC00472Q9H8W2 130 aa4.85□□□□□ -1.63
VPS29-203ENST00000546588 FAT3Q8TDW7 4589 aa4.84□□□□□ -1.63
VPS29-203ENST00000546588 A8MWP4 228 aa4.84□□□□□ -1.63
VPS29-203ENST00000546588 NDUFB1O75438 58 aa4.84□□□□□ -1.63
VPS29-203ENST00000546588 SPAG11AQ6PDA7 123 aa4.84□□□□□ -1.63
VPS29-203ENST00000546588 ADM2Q7Z4H4 148 aa4.84□□□□□ -1.63
VPS29-203ENST00000546588 BIRC6Q9NR09 4857 aa4.84□□□□□ -1.63
VPS29-203ENST00000546588 SPINK1P00995 79 aa4.83□□□□□ -1.64
VPS29-203ENST00000546588 KRTAP10-8P60410 259 aa4.83□□□□□ -1.64
VPS29-203ENST00000546588 TYMSOSQ8TAI1 123 aa4.83□□□□□ -1.64
VPS29-203ENST00000546588 DSCR10P59022 87 aa4.8□□□□□ -1.64
VPS29-203ENST00000546588 MIR22HGQ0VDD5 57 aa4.8□□□□□ -1.64
VPS29-203ENST00000546588 LINC00304Q8N9R0 145 aa4.8□□□□□ -1.64
VPS29-203ENST00000546588 BPY2O14599 106 aa4.79□□□□□ -1.64
VPS29-203ENST00000546588 CAMK2N1Q7Z7J9 78 aa4.79□□□□□ -1.64
VPS29-203ENST00000546588 HERC2O95714 4834 aa4.79□□□□□ -1.64
VPS29-203ENST00000546588 LRP1Q07954 4544 aaKnown RBP4.78□□□□□ -1.64
VPS29-203ENST00000546588 IGKV4-1P06312 121 aa4.78□□□□□ -1.64
VPS29-203ENST00000546588 MT1HL1P0DM35 61 aa4.78□□□□□ -1.64
VPS29-203ENST00000546588 FLG2Q5D862 2391 aaPredicted RBP4.76□□□□□ -1.65
VPS29-203ENST00000546588 K7EQZ3 153 aa4.74□□□□□ -1.65
VPS29-203ENST00000546588 LINC00208Q96KT6 92 aa4.74□□□□□ -1.65
VPS29-203ENST00000546588 ABCA13Q86UQ4 5058 aa4.73□□□□□ -1.65
VPS29-203ENST00000546588 CSAG1Q6PB30 78 aa4.73□□□□□ -1.65
VPS29-203ENST00000546588 LINC01558Q9Y6Z2 57 aa4.73□□□□□ -1.65
VPS29-203ENST00000546588 MYCBP2O75592 4640 aa4.73□□□□□ -1.65
VPS29-203ENST00000546588 A0A1B0GVX0 72 aa4.72□□□□□ -1.65
VPS29-203ENST00000546588 SPANXA2-OT1Q8N9U9 137 aa4.72□□□□□ -1.65
VPS29-203ENST00000546588 MMP24-AS1A0A0U1RRL7 71 aa4.71□□□□□ -1.66
VPS29-203ENST00000546588 Q8N9L7 120 aa4.7□□□□□ -1.66
VPS29-203ENST00000546588 H3BPC8 53 aa4.69□□□□□ -1.66
VPS29-203ENST00000546588 DEFB116Q30KQ4 102 aa4.69□□□□□ -1.66
VPS29-203ENST00000546588 C20orf166-AS1Q96NR2 134 aa4.69□□□□□ -1.66
VPS29-203ENST00000546588 ZCCHC13Q8WW36 166 aaKnown RBP4.68□□□□□ -1.66
VPS29-203ENST00000546588 KRTAP5-1Q6L8H4 278 aa4.66□□□□□ -1.66
VPS29-203ENST00000546588 DMAC1Q96GE9 116 aa4.65□□□□□ -1.67
VPS29-203ENST00000546588 PCLOQ9Y6V0 5065 aa4.65□□□□□ -1.67
VPS29-203ENST00000546588 H0Y9P7 68 aa4.64□□□□□ -1.67
VPS29-203ENST00000546588 P0C880 135 aa4.63□□□□□ -1.67
VPS29-203ENST00000546588 MRPL34Q9BQ48 92 aaKnown RBP4.63□□□□□ -1.67
VPS29-203ENST00000546588 KRTAP25-1Q3LHN0 102 aa4.61□□□□□ -1.67
VPS29-203ENST00000546588 TP53AIP1Q9HCN2 124 aa4.61□□□□□ -1.67
VPS29-203ENST00000546588 A8MUU9 505 aa4.59□□□□□ -1.67
VPS29-203ENST00000546588 MT3P25713 68 aa4.59□□□□□ -1.67
VPS29-203ENST00000546588 TPRXLQ17RH7 258 aa4.59□□□□□ -1.67
VPS29-203ENST00000546588 KRTAP13-3Q3SY46 172 aa4.59□□□□□ -1.67
VPS29-203ENST00000546588 WFDC13Q8IUB5 93 aa4.59□□□□□ -1.67
VPS29-203ENST00000546588 UQCR11O14957 56 aa4.58□□□□□ -1.68
VPS29-203ENST00000546588 SPINK7P58062 85 aa4.58□□□□□ -1.68
VPS29-203ENST00000546588 KRTAP5-9P26371 169 aa4.57□□□□□ -1.68
VPS29-203ENST00000546588 DMBT1Q9UGM3 2413 aaPredicted RBP4.56□□□□□ -1.68
VPS29-203ENST00000546588 KRTAP5-4Q6L8H1 288 aa4.55□□□□□ -1.68
VPS29-203ENST00000546588 COA5Q86WW8 74 aa4.54□□□□□ -1.68
VPS29-203ENST00000546588 SPATA8Q6RVD6 105 aa4.53□□□□□ -1.68
VPS29-203ENST00000546588 RPL37P61927 97 aaKnown RBP4.5□□□□□ -1.69
VPS29-203ENST00000546588 Q5W150 140 aa4.5□□□□□ -1.69
VPS29-203ENST00000546588 KRTAP4-4Q9BYR3 166 aa4.5□□□□□ -1.69
VPS29-203ENST00000546588 C9orf92A6NGG3 77 aa4.48□□□□□ -1.69
VPS29-203ENST00000546588 SPINT4Q6UDR6 99 aa4.44□□□□□ -1.7
VPS29-203ENST00000546588 LPAP08519 4548 aa4.44□□□□□ -1.7
VPS29-203ENST00000546588 HMCN2Q8NDA2 5059 aa4.43□□□□□ -1.7
VPS29-203ENST00000546588 MUC17Q685J3 4493 aa4.42□□□□□ -1.7
VPS29-203ENST00000546588 LRP2P98164 4655 aa4.42□□□□□ -1.7
VPS29-203ENST00000546588 A0A1B0GU33 70 aa4.4□□□□□ -1.71
VPS29-203ENST00000546588 KRTAP10-5P60370 271 aa4.4□□□□□ -1.71
VPS29-203ENST00000546588 A0A1B0GU69 56 aa4.39□□□□□ -1.71
VPS29-203ENST00000546588 HERC1Q15751 4861 aa4.39□□□□□ -1.71
VPS29-203ENST00000546588 HRES1P13985 223 aa4.33□□□□□ -1.72
VPS29-203ENST00000546588 PCOTHQ58A44 107 aa4.33□□□□□ -1.72
VPS29-203ENST00000546588 KRTAP9-6A8MVA2 160 aa4.29□□□□□ -1.72
VPS29-203ENST00000546588 COX6B2Q6YFQ2 88 aa4.27□□□□□ -1.73
VPS29-203ENST00000546588 KRTAP4-1Q9BYQ7 146 aa4.26□□□□□ -1.73
VPS29-203ENST00000546588 KRTAP19-2Q3LHN2 52 aa4.25□□□□□ -1.73
VPS29-203ENST00000546588 ACYP2P14621 99 aa4.24□□□□□ -1.73
VPS29-203ENST00000546588 LCE1FQ5T754 118 aa4.23□□□□□ -1.73
VPS29-203ENST00000546588 PRO2289Q9P1D8 64 aa4.21□□□□□ -1.74
VPS29-203ENST00000546588 UBR4Q5T4S7 5183 aa4.2□□□□□ -1.74
VPS29-203ENST00000546588 MUC2Q02817 5179 aa4.18□□□□□ -1.74
VPS29-203ENST00000546588 RNF213Q63HN8 5207 aa4.18□□□□□ -1.74
VPS29-203ENST00000546588 H1FX-AS1Q4G0G2 97 aa4.16□□□□□ -1.74
VPS29-203ENST00000546588 FLGP20930 4061 aaPredicted RBP4.13□□□□□ -1.75
VPS29-203ENST00000546588 KRTAP10-12P60413 245 aa4.11□□□□□ -1.75
VPS29-203ENST00000546588 S4R3F8 94 aa4.11□□□□□ -1.75
VPS29-203ENST00000546588 R4GN34 69 aa4.1□□□□□ -1.75
VPS29-203ENST00000546588 H0YAA0 97 aa4.06□□□□□ -1.76
VPS29-203ENST00000546588 MT1HP80294 61 aa4.01□□□□□ -1.77
VPS29-203ENST00000546588 OBSCNQ5VST9 7968 aa4□□□□□ -1.77
VPS29-203ENST00000546588 FAT4Q6V0I7 4981 aa3.99□□□□□ -1.77
VPS29-203ENST00000546588 LCE3CQ5T5A8 94 aa3.97□□□□□ -1.77
VPS29-203ENST00000546588 INE1O15225 51 aa3.96□□□□□ -1.78
VPS29-203ENST00000546588 PLAC4Q8WY50 150 aa3.95□□□□□ -1.78
VPS29-203ENST00000546588 CRIPTQ9P021 101 aa3.95□□□□□ -1.78
VPS29-203ENST00000546588 KRTAP4-3Q9BYR4 195 aa3.93□□□□□ -1.78
VPS29-203ENST00000546588 KRTAP5-2Q701N4 177 aa3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 92.9 ms