RNA–Protein interactions for RNA: ENST00000543721.1

LMO3-229, Transcript of LIM domain only 3, humanhuman

TSL 2

Gene LMO3, Length 3,626 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-229ENST00000543721 KRTAP9-7A8MTY7 169 aa2.62□□□□□ -1.99
LMO3-229ENST00000543721 TGP01266 2768 aa2.61□□□□□ -1.99
LMO3-229ENST00000543721 NDUFAF8A1L188 74 aa2.61□□□□□ -1.99
LMO3-229ENST00000543721 C9orf92A6NGG3 77 aa2.61□□□□□ -1.99
LMO3-229ENST00000543721 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.61□□□□□ -1.99
LMO3-229ENST00000543721 FLG2Q5D862 2391 aaPredicted RBP2.6□□□□□ -1.99
LMO3-229ENST00000543721 KRTAP10-6P60371 365 aaPredicted RBP2.6□□□□□ -1.99
LMO3-229ENST00000543721 LCE4AQ5TA78 99 aa2.6□□□□□ -1.99
LMO3-229ENST00000543721 A0A0D9SG42 100 aa2.59□□□□□ -1.99
LMO3-229ENST00000543721 LYSTQ99698 3801 aa2.59□□□□□ -1.99
LMO3-229ENST00000543721 COL7A1Q02388 2944 aa2.59□□□□□ -1.99
LMO3-229ENST00000543721 FAT3Q8TDW7 4589 aa2.59□□□□□ -2
LMO3-229ENST00000543721 S4R3F8 94 aa2.59□□□□□ -2
LMO3-229ENST00000543721 HSPG2P98160 4391 aa2.58□□□□□ -2
LMO3-229ENST00000543721 MEGF8Q7Z7M0 2845 aa2.56□□□□□ -2
LMO3-229ENST00000543721 KRTAP13-4Q3LI77 160 aa2.56□□□□□ -2
LMO3-229ENST00000543721 PLECQ15149 4684 aaKnown RBP2.56□□□□□ -2
LMO3-229ENST00000543721 C10orf95Q9H7T3 257 aa2.56□□□□□ -2
LMO3-229ENST00000543721 FBN3Q75N90 2809 aa2.55□□□□□ -2
LMO3-229ENST00000543721 M0QZ58 72 aa2.55□□□□□ -2
LMO3-229ENST00000543721 KRTAP9-9Q9BYP9 154 aa2.55□□□□□ -2
LMO3-229ENST00000543721 KRTAP9-4Q9BYQ2 154 aa2.55□□□□□ -2
LMO3-229ENST00000543721 LUZP6Q538Z0 58 aa2.54□□□□□ -2
LMO3-229ENST00000543721 DNAH2Q9P225 4427 aa2.52□□□□□ -2.01
LMO3-229ENST00000543721 DNAH11Q96DT5 4516 aa2.52□□□□□ -2.01
LMO3-229ENST00000543721 CSMD3Q7Z407 3707 aa2.52□□□□□ -2.01
LMO3-229ENST00000543721 KRTAP12-1P59990 96 aa2.52□□□□□ -2.01
LMO3-229ENST00000543721 KRTAP12-2P59991 146 aa2.51□□□□□ -2.01
LMO3-229ENST00000543721 KRTAP9-3Q9BYQ3 159 aa2.51□□□□□ -2.01
LMO3-229ENST00000543721 LCE3BQ5TA77 95 aa2.5□□□□□ -2.01
LMO3-229ENST00000543721 KRTAP17-1Q9BYP8 105 aa2.49□□□□□ -2.01
LMO3-229ENST00000543721 SACSQ9NZJ4 4579 aa2.48□□□□□ -2.01
LMO3-229ENST00000543721 STARD9Q9P2P6 4700 aa2.48□□□□□ -2.01
LMO3-229ENST00000543721 VPS13BQ7Z7G8 4022 aa2.47□□□□□ -2.01
LMO3-229ENST00000543721 PLAC4Q8WY50 150 aa2.46□□□□□ -2.02
LMO3-229ENST00000543721 SMR3BP02814 79 aaPredicted RBP2.46□□□□□ -2.02
LMO3-229ENST00000543721 DNAH5Q8TE73 4624 aa2.46□□□□□ -2.02
LMO3-229ENST00000543721 KRTAP10-4P60372 401 aaPredicted RBP2.45□□□□□ -2.02
LMO3-229ENST00000543721 LRP1BQ9NZR2 4599 aa2.44□□□□□ -2.02
LMO3-229ENST00000543721 PP632Q6XCG6 107 aa2.44□□□□□ -2.02
LMO3-229ENST00000543721 KRTAP10-8P60410 259 aa2.43□□□□□ -2.02
LMO3-229ENST00000543721 PKD1P98161 4303 aa2.42□□□□□ -2.02
LMO3-229ENST00000543721 R4GN34 69 aa2.4□□□□□ -2.02
LMO3-229ENST00000543721 KRTAP4-8A0A0G2JLE6 195 aa2.39□□□□□ -2.03
LMO3-229ENST00000543721 LCE5AQ5TCM9 118 aa2.39□□□□□ -2.03
LMO3-229ENST00000543721 A0A1B0GVY2 172 aa2.38□□□□□ -2.03
LMO3-229ENST00000543721 CAMK2N1Q7Z7J9 78 aa2.38□□□□□ -2.03
LMO3-229ENST00000543721 LCE1DQ5T752 114 aa2.37□□□□□ -2.03
LMO3-229ENST00000543721 DNHD1Q96M86 4753 aa2.34□□□□□ -2.03
LMO3-229ENST00000543721 BIRC6Q9NR09 4857 aa2.33□□□□□ -2.04
LMO3-229ENST00000543721 APOBP04114 4563 aaKnown RBP2.32□□□□□ -2.04
LMO3-229ENST00000543721 Q5VSD8 79 aa2.3□□□□□ -2.04
LMO3-229ENST00000543721 KRTAP4-9Q9BYQ8 210 aa2.3□□□□□ -2.04
LMO3-229ENST00000543721 LRP1Q07954 4544 aaKnown RBP2.3□□□□□ -2.04
LMO3-229ENST00000543721 KRTAP4-7Q9BYR0 210 aa2.3□□□□□ -2.04
LMO3-229ENST00000543721 KRTAP9-8Q9BYQ0 159 aa2.29□□□□□ -2.04
LMO3-229ENST00000543721 DYNC1H1Q14204 4646 aaKnown RBP2.27□□□□□ -2.05
LMO3-229ENST00000543721 TNP1P09430 55 aa2.27□□□□□ -2.05
LMO3-229ENST00000543721 SPRR5A0A1B0GTR4 108 aa2.27□□□□□ -2.05
LMO3-229ENST00000543721 FAT1Q14517 4588 aa2.26□□□□□ -2.05
LMO3-229ENST00000543721 KRTAP4-11Q9BYQ6 195 aa2.25□□□□□ -2.05
LMO3-229ENST00000543721 MT1HL1P0DM35 61 aa2.24□□□□□ -2.05
LMO3-229ENST00000543721 HYDINQ4G0P3 5121 aa2.24□□□□□ -2.05
LMO3-229ENST00000543721 KRTAP5-3Q6L8H2 238 aa2.24□□□□□ -2.05
LMO3-229ENST00000543721 MUC17Q685J3 4493 aa2.23□□□□□ -2.05
LMO3-229ENST00000543721 PRO2289Q9P1D8 64 aa2.23□□□□□ -2.05
LMO3-229ENST00000543721 KRTAP4-2Q9BYR5 136 aa2.21□□□□□ -2.06
LMO3-229ENST00000543721 INE1O15225 51 aa2.21□□□□□ -2.06
LMO3-229ENST00000543721 KMT2CQ8NEZ4 4911 aaKnown RBP2.2□□□□□ -2.06
LMO3-229ENST00000543721 RYR1P21817 5038 aa2.2□□□□□ -2.06
LMO3-229ENST00000543721 KRTAP4-5Q9BYR2 181 aa2.17□□□□□ -2.06
LMO3-229ENST00000543721 FLGP20930 4061 aaPredicted RBP2.16□□□□□ -2.06
LMO3-229ENST00000543721 MYCBP2O75592 4640 aa2.16□□□□□ -2.06
LMO3-229ENST00000543721 LCE1AQ5T7P2 110 aa2.13□□□□□ -2.07
LMO3-229ENST00000543721 KRTAP19-2Q3LHN2 52 aa2.1□□□□□ -2.07
LMO3-229ENST00000543721 KRTAP4-1Q9BYQ7 146 aa2.09□□□□□ -2.07
LMO3-229ENST00000543721 RYR3Q15413 4870 aa2.09□□□□□ -2.08
LMO3-229ENST00000543721 RYR2Q92736 4967 aa2.08□□□□□ -2.08
LMO3-229ENST00000543721 LRP2P98164 4655 aa2.07□□□□□ -2.08
LMO3-229ENST00000543721 HMCN1Q96RW7 5635 aa2.07□□□□□ -2.08
LMO3-229ENST00000543721 SPRR2GQ9BYE4 73 aa2.05□□□□□ -2.08
LMO3-229ENST00000543721 KRTAP8-1Q8IUC2 63 aa2.05□□□□□ -2.08
LMO3-229ENST00000543721 LCE3AQ5TA76 89 aa2.04□□□□□ -2.08
LMO3-229ENST00000543721 LPAP08519 4548 aa2.02□□□□□ -2.09
LMO3-229ENST00000543721 FSIP2Q5CZC0 6907 aa2.02□□□□□ -2.09
LMO3-229ENST00000543721 HERC1Q15751 4861 aa2.02□□□□□ -2.09
LMO3-229ENST00000543721 M0R2T5 61 aa2□□□□□ -2.09
LMO3-229ENST00000543721 PCLOQ9Y6V0 5065 aa2□□□□□ -2.09
LMO3-229ENST00000543721 HERC2O95714 4834 aa1.99□□□□□ -2.09
LMO3-229ENST00000543721 KRTAP12-3P60328 96 aa1.98□□□□□ -2.09
LMO3-229ENST00000543721 EPPK1P58107 5090 aaKnown RBP1.97□□□□□ -2.09
LMO3-229ENST00000543721 KRTAP19-8Q3LI54 63 aa1.95□□□□□ -2.1
LMO3-229ENST00000543721 KRTAP10-12P60413 245 aa1.94□□□□□ -2.1
LMO3-229ENST00000543721 KIAA1109Q2LD37 5005 aa1.94□□□□□ -2.1
LMO3-229ENST00000543721 OBSCNQ5VST9 7968 aa1.93□□□□□ -2.1
LMO3-229ENST00000543721 KRTAP10-10P60014 251 aa1.92□□□□□ -2.1
LMO3-229ENST00000543721 KRTAP2-2Q9BYT5 123 aa1.91□□□□□ -2.1
LMO3-229ENST00000543721 KRTAP10-5P60370 271 aa1.89□□□□□ -2.11
LMO3-229ENST00000543721 MT2AP02795 61 aa1.88□□□□□ -2.11
LMO3-229ENST00000543721 MT1XP80297 61 aa1.88□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms