RNA–Protein interactions for RNA: ENST00000542068.5

CNOT9-208, Transcript of CCR4-NOT transcription complex subunit 9, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CNOT9, Length 3,259 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT9-208ENST00000542068 K7ERS5 55 aa8.05□□□□□ -1.12
CNOT9-208ENST00000542068 RYR2Q92736 4967 aa8.02□□□□□ -1.13
CNOT9-208ENST00000542068 FAT3Q8TDW7 4589 aa7.99□□□□□ -1.13
CNOT9-208ENST00000542068 KIAA1109Q2LD37 5005 aa7.99□□□□□ -1.13
CNOT9-208ENST00000542068 HSPG2P98160 4391 aa7.94□□□□□ -1.14
CNOT9-208ENST00000542068 KRTAP13-4Q3LI77 160 aa7.91□□□□□ -1.14
CNOT9-208ENST00000542068 PKHD1L1Q86WI1 4243 aa7.91□□□□□ -1.14
CNOT9-208ENST00000542068 RYR3Q15413 4870 aa7.91□□□□□ -1.14
CNOT9-208ENST00000542068 KRTAP10-8P60410 259 aa7.89□□□□□ -1.15
CNOT9-208ENST00000542068 ROMO1P60602 79 aa7.89□□□□□ -1.15
CNOT9-208ENST00000542068 XP32Q5T750 250 aa7.86□□□□□ -1.15
CNOT9-208ENST00000542068 RPL37P61927 97 aaKnown RBP7.86□□□□□ -1.15
CNOT9-208ENST00000542068 KRTAP10-6P60371 365 aaPredicted RBP7.85□□□□□ -1.15
CNOT9-208ENST00000542068 C10orf95Q9H7T3 257 aa7.85□□□□□ -1.15
CNOT9-208ENST00000542068 KRTAP3-3Q9BYR6 98 aa7.84□□□□□ -1.15
CNOT9-208ENST00000542068 KRTAP17-1Q9BYP8 105 aa7.83□□□□□ -1.16
CNOT9-208ENST00000542068 RYR1P21817 5038 aa7.83□□□□□ -1.16
CNOT9-208ENST00000542068 P0C880 135 aa7.83□□□□□ -1.16
CNOT9-208ENST00000542068 S4R3F8 94 aa7.82□□□□□ -1.16
CNOT9-208ENST00000542068 SPINT4Q6UDR6 99 aa7.79□□□□□ -1.16
CNOT9-208ENST00000542068 KRTAP3-2Q9BYR7 98 aa7.76□□□□□ -1.17
CNOT9-208ENST00000542068 TPRXLQ17RH7 258 aa7.74□□□□□ -1.17
CNOT9-208ENST00000542068 LRP2P98164 4655 aa7.73□□□□□ -1.17
CNOT9-208ENST00000542068 LPAP08519 4548 aa7.71□□□□□ -1.17
CNOT9-208ENST00000542068 TNXBP22105 4242 aa7.71□□□□□ -1.17
CNOT9-208ENST00000542068 KRTAP12-2P59991 146 aa7.68□□□□□ -1.18
CNOT9-208ENST00000542068 MT1HL1P0DM35 61 aa7.67□□□□□ -1.18
CNOT9-208ENST00000542068 EPPK1P58107 5090 aaKnown RBP7.65□□□□□ -1.18
CNOT9-208ENST00000542068 KRTAP4-5Q9BYR2 181 aa7.63□□□□□ -1.19
CNOT9-208ENST00000542068 J3QL48 77 aa7.59□□□□□ -1.19
CNOT9-208ENST00000542068 A0A0A0MQY5 61 aa7.58□□□□□ -1.2
CNOT9-208ENST00000542068 ABCA13Q86UQ4 5058 aa7.55□□□□□ -1.2
CNOT9-208ENST00000542068 KRTAP12-1P59990 96 aa7.53□□□□□ -1.2
CNOT9-208ENST00000542068 NDUFAF8A1L188 74 aa7.49□□□□□ -1.21
CNOT9-208ENST00000542068 M0QZ58 72 aa7.43□□□□□ -1.22
CNOT9-208ENST00000542068 R4GN34 69 aa7.38□□□□□ -1.23
CNOT9-208ENST00000542068 SEC61BP60468 96 aaKnown RBP7.35□□□□□ -1.23
CNOT9-208ENST00000542068 MUC2Q02817 5179 aa7.35□□□□□ -1.23
CNOT9-208ENST00000542068 KRTAP15-1Q3LI76 137 aa7.34□□□□□ -1.23
CNOT9-208ENST00000542068 HERC2O95714 4834 aa7.32□□□□□ -1.24
CNOT9-208ENST00000542068 LORP23490 312 aaPredicted RBP7.26□□□□□ -1.25
CNOT9-208ENST00000542068 KRTAP4-1Q9BYQ7 146 aa7.22□□□□□ -1.25
CNOT9-208ENST00000542068 CAMK2N1Q7Z7J9 78 aa7.1□□□□□ -1.27
CNOT9-208ENST00000542068 HERC1Q15751 4861 aa7.09□□□□□ -1.27
CNOT9-208ENST00000542068 PLAC4Q8WY50 150 aa7.05□□□□□ -1.28
CNOT9-208ENST00000542068 MUC17Q685J3 4493 aa7.02□□□□□ -1.29
CNOT9-208ENST00000542068 FAT4Q6V0I7 4981 aa6.99□□□□□ -1.29
CNOT9-208ENST00000542068 M0R2T5 61 aa6.98□□□□□ -1.29
CNOT9-208ENST00000542068 RNF213Q63HN8 5207 aa6.93□□□□□ -1.3
CNOT9-208ENST00000542068 PCLOQ9Y6V0 5065 aa6.9□□□□□ -1.31
CNOT9-208ENST00000542068 BIRC6Q9NR09 4857 aa6.85□□□□□ -1.31
CNOT9-208ENST00000542068 LUZP6Q538Z0 58 aa6.83□□□□□ -1.32
CNOT9-208ENST00000542068 KRTAP19-2Q3LHN2 52 aa6.77□□□□□ -1.33
CNOT9-208ENST00000542068 UBR4Q5T4S7 5183 aa6.74□□□□□ -1.33
CNOT9-208ENST00000542068 PP632Q6XCG6 107 aa6.71□□□□□ -1.33
CNOT9-208ENST00000542068 FLGP20930 4061 aaPredicted RBP6.69□□□□□ -1.34
CNOT9-208ENST00000542068 HMCN2Q8NDA2 5059 aa6.69□□□□□ -1.34
CNOT9-208ENST00000542068 TNP1P09430 55 aa6.68□□□□□ -1.34
CNOT9-208ENST00000542068 KRTAP10-10P60014 251 aa6.62□□□□□ -1.35
CNOT9-208ENST00000542068 LCE2CQ5TA81 110 aa6.51□□□□□ -1.37
CNOT9-208ENST00000542068 MT1HP80294 61 aa6.45□□□□□ -1.38
CNOT9-208ENST00000542068 KRTAP19-1Q8IUB9 90 aa6.39□□□□□ -1.39
CNOT9-208ENST00000542068 MT1FP04733 61 aa6.38□□□□□ -1.39
CNOT9-208ENST00000542068 LCE3AQ5TA76 89 aa6.37□□□□□ -1.39
CNOT9-208ENST00000542068 MT2AP02795 61 aa6.35□□□□□ -1.39
CNOT9-208ENST00000542068 SPRR2GQ9BYE4 73 aa6.31□□□□□ -1.4
CNOT9-208ENST00000542068 SPRR5A0A1B0GTR4 108 aa6.26□□□□□ -1.41
CNOT9-208ENST00000542068 KRTAP23-1A1A580 65 aa6.25□□□□□ -1.41
CNOT9-208ENST00000542068 KRTAP9-8Q9BYQ0 159 aa6.23□□□□□ -1.41
CNOT9-208ENST00000542068 USH2AO75445 5202 aa6.2□□□□□ -1.42
CNOT9-208ENST00000542068 FSIP2Q5CZC0 6907 aa6.09□□□□□ -1.43
CNOT9-208ENST00000542068 MT1BP07438 61 aa6.06□□□□□ -1.44
CNOT9-208ENST00000542068 KMT2DO14686 5537 aa6.03□□□□□ -1.44
CNOT9-208ENST00000542068 KRTAP10-12P60413 245 aa6.02□□□□□ -1.45
CNOT9-208ENST00000542068 MT1XP80297 61 aa6.01□□□□□ -1.45
CNOT9-208ENST00000542068 KRTAP10-5P60370 271 aa6.01□□□□□ -1.45
CNOT9-208ENST00000542068 KRTAP12-3P60328 96 aa6.01□□□□□ -1.45
CNOT9-208ENST00000542068 KRTAP8-1Q8IUC2 63 aa5.99□□□□□ -1.45
CNOT9-208ENST00000542068 KRTAP10-7P60409 375 aaPredicted RBP5.98□□□□□ -1.45
CNOT9-208ENST00000542068 KRTAP19-8Q3LI54 63 aa5.98□□□□□ -1.45
CNOT9-208ENST00000542068 KRTAP9-3Q9BYQ3 159 aa5.94□□□□□ -1.46
CNOT9-208ENST00000542068 PRO2289Q9P1D8 64 aa5.93□□□□□ -1.46
CNOT9-208ENST00000542068 LCE2BO14633 110 aa5.83□□□□□ -1.48
CNOT9-208ENST00000542068 KRTAP4-8A0A0G2JLE6 195 aa5.77□□□□□ -1.49
CNOT9-208ENST00000542068 KRTAP4-8Q9BYQ9 185 aa5.77□□□□□ -1.49
CNOT9-208ENST00000542068 KRTAP19-5Q3LI72 72 aa5.74□□□□□ -1.49
CNOT9-208ENST00000542068 INE1O15225 51 aa5.68□□□□□ -1.5
CNOT9-208ENST00000542068 LCE3CQ5T5A8 94 aa5.61□□□□□ -1.51
CNOT9-208ENST00000542068 LCE2AQ5TA79 106 aaPredicted RBP5.58□□□□□ -1.52
CNOT9-208ENST00000542068 KRTAP4-7Q9BYR0 210 aa5.56□□□□□ -1.52
CNOT9-208ENST00000542068 KRTAP9-6A8MVA2 160 aa5.5□□□□□ -1.53
CNOT9-208ENST00000542068 LCE2DQ5TA82 110 aaPredicted RBP5.48□□□□□ -1.53
CNOT9-208ENST00000542068 DSTQ03001 7570 aaKnown RBP5.47□□□□□ -1.53
CNOT9-208ENST00000542068 SSPOA2VEC9 5147 aa5.45□□□□□ -1.54
CNOT9-208ENST00000542068 MUC12Q9UKN1 5478 aa5.36□□□□□ -1.55
CNOT9-208ENST00000542068 KRTAP19-7Q3SYF9 63 aa5.34□□□□□ -1.55
CNOT9-208ENST00000542068 CRCT1Q9UGL9 99 aa5.34□□□□□ -1.55
CNOT9-208ENST00000542068 OBSCNQ5VST9 7968 aa5.29□□□□□ -1.56
CNOT9-208ENST00000542068 FCGBPQ9Y6R7 5405 aaPredicted RBP5.28□□□□□ -1.56
CNOT9-208ENST00000542068 MT1EP04732 61 aa5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms