RNA–Protein interactions for RNA: ENST00000542032.1

LEMD3-204, Transcript of LEM domain containing 3, humanhuman

TSL 3

Gene LEMD3, Length 645 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LEMD3-204ENST00000542032 CUBNO60494 3623 aa0.72□□□□□ -2.29
LEMD3-204ENST00000542032 ITPR3Q14573 2671 aa0.72□□□□□ -2.29
LEMD3-204ENST00000542032 SETXQ7Z333 2677 aaKnown RBP0.72□□□□□ -2.29
LEMD3-204ENST00000542032 CSMD2Q7Z408 3487 aa0.72□□□□□ -2.29
LEMD3-204ENST00000542032 NIPBLQ6KC79 2804 aaeCLIP0.72□□□□□ -2.29
LEMD3-204ENST00000542032 IGLV5-48A0A075B6I7 105 aa0.72□□□□□ -2.29
LEMD3-204ENST00000542032 DEFB131AP59861 70 aa0.72□□□□□ -2.29
LEMD3-204ENST00000542032 NOP10Q9NPE3 64 aaKnown RBP0.72□□□□□ -2.29
LEMD3-204ENST00000542032 GCN1Q92616 2671 aaKnown RBP0.72□□□□□ -2.29
LEMD3-204ENST00000542032 FLNAP21333 2647 aaKnown RBP0.71□□□□□ -2.3
LEMD3-204ENST00000542032 TEP1Q99973 2627 aaKnown RBP0.71□□□□□ -2.3
LEMD3-204ENST00000542032 VPS13CQ709C8 3753 aa0.71□□□□□ -2.3
LEMD3-204ENST00000542032 PRKDCP78527 4128 aaKnown RBP0.71□□□□□ -2.3
LEMD3-204ENST00000542032 MMP24-AS1A0A0U1RRL7 71 aa0.71□□□□□ -2.3
LEMD3-204ENST00000542032 UNC79Q9P2D8 2635 aa0.71□□□□□ -2.3
LEMD3-204ENST00000542032 UBR5O95071 2799 aaPredicted RBP0.71□□□□□ -2.3
LEMD3-204ENST00000542032 OTOGQ6ZRI0 2925 aa0.71□□□□□ -2.3
LEMD3-204ENST00000542032 NBEAL1Q6ZS30 2694 aa0.71□□□□□ -2.3
LEMD3-204ENST00000542032 NBEAL2Q6ZNJ1 2754 aa0.7□□□□□ -2.3
LEMD3-204ENST00000542032 DEFB108AA8MXU0 73 aa0.7□□□□□ -2.3
LEMD3-204ENST00000542032 PRCDQ00LT1 54 aa0.7□□□□□ -2.3
LEMD3-204ENST00000542032 RPL39P5Q59GN2 51 aa0.7□□□□□ -2.3
LEMD3-204ENST00000542032 TMEM167AQ8TBQ9 72 aa0.7□□□□□ -2.3
LEMD3-204ENST00000542032 LEAP2Q969E1 77 aa0.7□□□□□ -2.3
LEMD3-204ENST00000542032 PDZD2O15018 2839 aa0.7□□□□□ -2.3
LEMD3-204ENST00000542032 PKD1L1Q8TDX9 2849 aa0.7□□□□□ -2.3
LEMD3-204ENST00000542032 NSD1Q96L73 2696 aaPredicted RBP0.7□□□□□ -2.3
LEMD3-204ENST00000542032 NOTCH1P46531 2555 aa0.69□□□□□ -2.3
LEMD3-204ENST00000542032 HIVEP1P15822 2718 aa0.69□□□□□ -2.3
LEMD3-204ENST00000542032 K7EIM0 57 aa0.69□□□□□ -2.3
LEMD3-204ENST00000542032 MAST4O15021 2626 aa0.69□□□□□ -2.3
LEMD3-204ENST00000542032 FLNBO75369 2602 aaKnown RBP0.69□□□□□ -2.3
LEMD3-204ENST00000542032 STAB1Q9NY15 2570 aa0.69□□□□□ -2.3
LEMD3-204ENST00000542032 TENM3Q9P273 2699 aa0.69□□□□□ -2.3
LEMD3-204ENST00000542032 FAT2Q9NYQ8 4349 aa0.68□□□□□ -2.3
LEMD3-204ENST00000542032 DEFB124Q8NES8 71 aa0.68□□□□□ -2.3
LEMD3-204ENST00000542032 DEFB108BQ8NET1 73 aa0.68□□□□□ -2.3
LEMD3-204ENST00000542032 HECTD1Q9ULT8 2610 aa0.68□□□□□ -2.3
LEMD3-204ENST00000542032 COL6A5A8TX70 2615 aa0.68□□□□□ -2.3
LEMD3-204ENST00000542032 ANK3Q12955 4377 aaKnown RBP0.67□□□□□ -2.3
LEMD3-204ENST00000542032 AKAP9Q99996 3911 aa0.67□□□□□ -2.3
LEMD3-204ENST00000542032 NBPF19A0A087WUL8 3843 aa0.67□□□□□ -2.3
LEMD3-204ENST00000542032 POLR2KP53803 58 aaKnown RBP0.67□□□□□ -2.3
LEMD3-204ENST00000542032 STAB2Q8WWQ8 2551 aa0.67□□□□□ -2.3
LEMD3-204ENST00000542032 MGAM2Q2M2H8 2515 aa0.67□□□□□ -2.3
LEMD3-204ENST00000542032 TENM2Q9NT68 2774 aa0.67□□□□□ -2.3
LEMD3-204ENST00000542032 TRRAPQ9Y4A5 3859 aa0.66□□□□□ -2.3
LEMD3-204ENST00000542032 A8MTW9 85 aa0.66□□□□□ -2.3
LEMD3-204ENST00000542032 PRM1P04553 51 aa0.66□□□□□ -2.3
LEMD3-204ENST00000542032 LYSTQ99698 3801 aa0.66□□□□□ -2.3
LEMD3-204ENST00000542032 APELAP0DMC3 54 aa0.65□□□□□ -2.31
LEMD3-204ENST00000542032 DEFB1P60022 68 aa0.65□□□□□ -2.31
LEMD3-204ENST00000542032 SRRM2Q9UQ35 2752 aaKnown RBP0.64□□□□□ -2.31
LEMD3-204ENST00000542032 M0QY20 66 aa0.64□□□□□ -2.31
LEMD3-204ENST00000542032 COL7A1Q02388 2944 aa0.64□□□□□ -2.31
LEMD3-204ENST00000542032 TNXBP22105 4242 aa0.63□□□□□ -2.31
LEMD3-204ENST00000542032 RPL39P62891 51 aaKnown RBP0.63□□□□□ -2.31
LEMD3-204ENST00000542032 RPL39LQ96EH5 51 aaKnown RBP0.63□□□□□ -2.31
LEMD3-204ENST00000542032 RHPN1-AS1Q9BWJ2 59 aa0.63□□□□□ -2.31
LEMD3-204ENST00000542032 TGP01266 2768 aa0.63□□□□□ -2.31
LEMD3-204ENST00000542032 H3BUX3 64 aa0.62□□□□□ -2.31
LEMD3-204ENST00000542032 DEFB104AQ8WTQ1 72 aa0.62□□□□□ -2.31
LEMD3-204ENST00000542032 CMYA5Q8N3K9 4069 aa0.61□□□□□ -2.31
LEMD3-204ENST00000542032 HUWE1Q7Z6Z7 4374 aaKnown RBP0.61□□□□□ -2.31
LEMD3-204ENST00000542032 DNAH1Q9P2D7 4330 aa0.61□□□□□ -2.31
LEMD3-204ENST00000542032 DNAH9Q9NYC9 4486 aa0.6□□□□□ -2.31
LEMD3-204ENST00000542032 C9orf92A6NGG3 77 aa0.6□□□□□ -2.31
LEMD3-204ENST00000542032 DEFB136Q30KP8 78 aa0.6□□□□□ -2.31
LEMD3-204ENST00000542032 DNAH3Q8TD57 4116 aa0.6□□□□□ -2.31
LEMD3-204ENST00000542032 H3BNG1 76 aa0.59□□□□□ -2.31
LEMD3-204ENST00000542032 CLPSL2Q6UWE3 100 aa0.59□□□□□ -2.31
LEMD3-204ENST00000542032 VPS13DQ5THJ4 4388 aa0.59□□□□□ -2.32
LEMD3-204ENST00000542032 DNAH10Q8IVF4 4471 aa0.58□□□□□ -2.32
LEMD3-204ENST00000542032 DNAH8Q96JB1 4490 aa0.58□□□□□ -2.32
LEMD3-204ENST00000542032 DYNC2H1Q8NCM8 4307 aaKnown RBP0.58□□□□□ -2.32
LEMD3-204ENST00000542032 A0A096LPF7 62 aa0.58□□□□□ -2.32
LEMD3-204ENST00000542032 HTN1P15515 57 aa0.58□□□□□ -2.32
LEMD3-204ENST00000542032 KMT2AQ03164 3969 aa0.57□□□□□ -2.32
LEMD3-204ENST00000542032 DNAH2Q9P225 4427 aa0.57□□□□□ -2.32
LEMD3-204ENST00000542032 DNAH7Q8WXX0 4024 aa0.57□□□□□ -2.32
LEMD3-204ENST00000542032 M0QZ58 72 aa0.57□□□□□ -2.32
LEMD3-204ENST00000542032 DNAH17Q9UFH2 4485 aa0.57□□□□□ -2.32
LEMD3-204ENST00000542032 PLECQ15149 4684 aaKnown RBP0.56□□□□□ -2.32
LEMD3-204ENST00000542032 DMBT1Q9UGM3 2413 aaPredicted RBP0.56□□□□□ -2.32
LEMD3-204ENST00000542032 DNAH6Q9C0G6 4158 aa0.56□□□□□ -2.32
LEMD3-204ENST00000542032 VPS13BQ7Z7G8 4022 aa0.56□□□□□ -2.32
LEMD3-204ENST00000542032 LRP1BQ9NZR2 4599 aa0.56□□□□□ -2.32
LEMD3-204ENST00000542032 DEFB4AO15263 64 aa0.56□□□□□ -2.32
LEMD3-204ENST00000542032 LINC01556Q5JQF7 62 aa0.56□□□□□ -2.32
LEMD3-204ENST00000542032 DNAH11Q96DT5 4516 aa0.56□□□□□ -2.32
LEMD3-204ENST00000542032 STARD9Q9P2P6 4700 aa0.55□□□□□ -2.32
LEMD3-204ENST00000542032 SPART-AS1P0CW21 52 aa0.55□□□□□ -2.32
LEMD3-204ENST00000542032 KRTAP21-1Q3LI58 79 aa0.55□□□□□ -2.32
LEMD3-204ENST00000542032 TOMM7Q9P0U1 55 aa0.55□□□□□ -2.32
LEMD3-204ENST00000542032 PKHD1P08F94 4074 aa0.55□□□□□ -2.32
LEMD3-204ENST00000542032 HECTD4Q9Y4D8 3996 aa0.55□□□□□ -2.32
LEMD3-204ENST00000542032 DNAH5Q8TE73 4624 aa0.54□□□□□ -2.32
LEMD3-204ENST00000542032 DNHD1Q96M86 4753 aa0.54□□□□□ -2.32
LEMD3-204ENST00000542032 PKD1P98161 4303 aa0.54□□□□□ -2.32
LEMD3-204ENST00000542032 A0A096LNI7 61 aa0.53□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms