RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 FRAS1Q86XX4 4008 aa2.31□□□□□ -2.04
CD44-236ENST00000533222 NBEAL2Q6ZNJ1 2754 aa2.3□□□□□ -2.04
CD44-236ENST00000533222 EPG5Q9HCE0 2579 aa2.29□□□□□ -2.04
CD44-236ENST00000533222 CACNA1AO00555 2505 aa2.29□□□□□ -2.04
CD44-236ENST00000533222 KRTAP10-10P60014 251 aa2.28□□□□□ -2.04
CD44-236ENST00000533222 MYO15AQ9UKN7 3530 aa2.28□□□□□ -2.04
CD44-236ENST00000533222 LYSTQ99698 3801 aa2.28□□□□□ -2.04
CD44-236ENST00000533222 RELNP78509 3460 aa2.27□□□□□ -2.05
CD44-236ENST00000533222 PDZD2O15018 2839 aa2.27□□□□□ -2.05
CD44-236ENST00000533222 ANK2Q01484 3957 aa2.27□□□□□ -2.05
CD44-236ENST00000533222 MXRA5Q9NR99 2828 aa2.27□□□□□ -2.05
CD44-236ENST00000533222 USP24Q9UPU5 2620 aa2.26□□□□□ -2.05
CD44-236ENST00000533222 ANKRD11Q6UB99 2663 aaPredicted RBP2.26□□□□□ -2.05
CD44-236ENST00000533222 FASNP49327 2511 aaKnown RBP2.25□□□□□ -2.05
CD44-236ENST00000533222 COL7A1Q02388 2944 aa2.25□□□□□ -2.05
CD44-236ENST00000533222 CMYA5Q8N3K9 4069 aa2.25□□□□□ -2.05
CD44-236ENST00000533222 BDP1A6H8Y1 2624 aa2.24□□□□□ -2.05
CD44-236ENST00000533222 ABCA12Q86UK0 2595 aa2.24□□□□□ -2.05
CD44-236ENST00000533222 ITPR2Q14571 2701 aa2.24□□□□□ -2.05
CD44-236ENST00000533222 ANK3Q12955 4377 aaKnown RBP2.23□□□□□ -2.05
CD44-236ENST00000533222 DYNC2H1Q8NCM8 4307 aaKnown RBP2.23□□□□□ -2.05
CD44-236ENST00000533222 MYCBP2O75592 4640 aa2.23□□□□□ -2.05
CD44-236ENST00000533222 HIVEP1P15822 2718 aa2.23□□□□□ -2.05
CD44-236ENST00000533222 DNAH8Q96JB1 4490 aa2.23□□□□□ -2.05
CD44-236ENST00000533222 DNAH6Q9C0G6 4158 aa2.22□□□□□ -2.05
CD44-236ENST00000533222 KRTAP10-1P60331 282 aa2.22□□□□□ -2.05
CD44-236ENST00000533222 POLQO75417 2590 aa2.21□□□□□ -2.06
CD44-236ENST00000533222 ATRQ13535 2644 aa2.21□□□□□ -2.06
CD44-236ENST00000533222 DNAH2Q9P225 4427 aa2.21□□□□□ -2.06
CD44-236ENST00000533222 NOTCH2Q04721 2471 aa2.2□□□□□ -2.06
CD44-236ENST00000533222 CSMD3Q7Z407 3707 aa2.2□□□□□ -2.06
CD44-236ENST00000533222 VPS13CQ709C8 3753 aa2.2□□□□□ -2.06
CD44-236ENST00000533222 HUWE1Q7Z6Z7 4374 aaKnown RBP2.19□□□□□ -2.06
CD44-236ENST00000533222 DNAH7Q8WXX0 4024 aa2.19□□□□□ -2.06
CD44-236ENST00000533222 FBN3Q75N90 2809 aa2.18□□□□□ -2.06
CD44-236ENST00000533222 PRKDCP78527 4128 aaKnown RBP2.18□□□□□ -2.06
CD44-236ENST00000533222 ZNF292O60281 2723 aa2.18□□□□□ -2.06
CD44-236ENST00000533222 KRTAP5-2Q701N4 177 aa2.18□□□□□ -2.06
CD44-236ENST00000533222 DNAH9Q9NYC9 4486 aa2.18□□□□□ -2.06
CD44-236ENST00000533222 STAB2Q8WWQ8 2551 aa2.17□□□□□ -2.06
CD44-236ENST00000533222 DNAH3Q8TD57 4116 aa2.17□□□□□ -2.06
CD44-236ENST00000533222 DNAH17Q9UFH2 4485 aa2.17□□□□□ -2.06
CD44-236ENST00000533222 TEP1Q99973 2627 aaKnown RBP2.17□□□□□ -2.06
CD44-236ENST00000533222 SACSQ9NZJ4 4579 aa2.16□□□□□ -2.06
CD44-236ENST00000533222 LCE1CQ5T751 118 aa2.16□□□□□ -2.06
CD44-236ENST00000533222 LCE1BQ5T7P3 118 aa2.16□□□□□ -2.06
CD44-236ENST00000533222 SVEP1Q4LDE5 3571 aa2.16□□□□□ -2.06
CD44-236ENST00000533222 MUC3AQ02505 3323 aa2.16□□□□□ -2.06
CD44-236ENST00000533222 DNAH10Q8IVF4 4471 aa2.15□□□□□ -2.07
CD44-236ENST00000533222 HECTD4Q9Y4D8 3996 aa2.14□□□□□ -2.07
CD44-236ENST00000533222 PKD1L1Q8TDX9 2849 aa2.13□□□□□ -2.07
CD44-236ENST00000533222 ACACBO00763 2458 aa2.13□□□□□ -2.07
CD44-236ENST00000533222 FLNCQ14315 2725 aa2.12□□□□□ -2.07
CD44-236ENST00000533222 KRTAP8-1Q8IUC2 63 aa2.12□□□□□ -2.07
CD44-236ENST00000533222 MYO18BQ8IUG5 2567 aa2.12□□□□□ -2.07
CD44-236ENST00000533222 NOTCH1P46531 2555 aa2.11□□□□□ -2.07
CD44-236ENST00000533222 ZANQ9Y493 2812 aa2.1□□□□□ -2.07
CD44-236ENST00000533222 CSMD2Q7Z408 3487 aa2.1□□□□□ -2.07
CD44-236ENST00000533222 FBN2P35556 2912 aa2.09□□□□□ -2.07
CD44-236ENST00000533222 EYSQ5T1H1 3165 aa2.09□□□□□ -2.07
CD44-236ENST00000533222 FLGP20930 4061 aaPredicted RBP2.09□□□□□ -2.08
CD44-236ENST00000533222 CUBNO60494 3623 aa2.08□□□□□ -2.08
CD44-236ENST00000533222 VPS13BQ7Z7G8 4022 aa2.07□□□□□ -2.08
CD44-236ENST00000533222 PKD1P98161 4303 aa2.07□□□□□ -2.08
CD44-236ENST00000533222 KRTAP2-3P0C7H8 128 aa2.05□□□□□ -2.08
CD44-236ENST00000533222 KRTAP2-4Q9BYR9 128 aa2.05□□□□□ -2.08
CD44-236ENST00000533222 KRTAP2-1Q9BYU5 128 aa2.05□□□□□ -2.08
CD44-236ENST00000533222 KMT2AQ03164 3969 aa2.04□□□□□ -2.08
CD44-236ENST00000533222 TENM3Q9P273 2699 aa2.03□□□□□ -2.08
CD44-236ENST00000533222 ZNF469Q96JG9 3925 aaPredicted RBP2.03□□□□□ -2.08
CD44-236ENST00000533222 MGAM2Q2M2H8 2515 aa2.03□□□□□ -2.08
CD44-236ENST00000533222 APOBP04114 4563 aaKnown RBP2.02□□□□□ -2.09
CD44-236ENST00000533222 HSPG2P98160 4391 aa2.01□□□□□ -2.09
CD44-236ENST00000533222 FLNAP21333 2647 aaKnown RBP2.01□□□□□ -2.09
CD44-236ENST00000533222 IGSF10Q6WRI0 2623 aa2□□□□□ -2.09
CD44-236ENST00000533222 NSD1Q96L73 2696 aaPredicted RBP1.99□□□□□ -2.09
CD44-236ENST00000533222 LRP1Q07954 4544 aaKnown RBP1.99□□□□□ -2.09
CD44-236ENST00000533222 STAB1Q9NY15 2570 aa1.99□□□□□ -2.09
CD44-236ENST00000533222 MAST4O15021 2626 aa1.97□□□□□ -2.09
CD44-236ENST00000533222 PKHD1L1Q86WI1 4243 aa1.97□□□□□ -2.09
CD44-236ENST00000533222 DNAH5Q8TE73 4624 aa1.97□□□□□ -2.09
CD44-236ENST00000533222 TENM1Q9UKZ4 2725 aa1.96□□□□□ -2.1
CD44-236ENST00000533222 M0R2T5 61 aa1.96□□□□□ -2.1
CD44-236ENST00000533222 FAT3Q8TDW7 4589 aa1.95□□□□□ -2.1
CD44-236ENST00000533222 KRTAP6-3Q3LI67 103 aa1.94□□□□□ -2.1
CD44-236ENST00000533222 FAT2Q9NYQ8 4349 aa1.93□□□□□ -2.1
CD44-236ENST00000533222 KRTAP12-4P60329 112 aa1.93□□□□□ -2.1
CD44-236ENST00000533222 TNXBP22105 4242 aa1.91□□□□□ -2.1
CD44-236ENST00000533222 KRTAP12-3P60328 96 aa1.91□□□□□ -2.1
CD44-236ENST00000533222 FLNBO75369 2602 aaKnown RBP1.9□□□□□ -2.1
CD44-236ENST00000533222 KRTAP10-4P60372 401 aaPredicted RBP1.9□□□□□ -2.11
CD44-236ENST00000533222 PKHD1P08F94 4074 aa1.9□□□□□ -2.11
CD44-236ENST00000533222 STARD9Q9P2P6 4700 aa1.89□□□□□ -2.11
CD44-236ENST00000533222 DYNC1H1Q14204 4646 aaKnown RBP1.89□□□□□ -2.11
CD44-236ENST00000533222 PLECQ15149 4684 aaKnown RBP1.88□□□□□ -2.11
CD44-236ENST00000533222 KRTAP5-8O75690 187 aa1.88□□□□□ -2.11
CD44-236ENST00000533222 SMR3BP02814 79 aaPredicted RBP1.85□□□□□ -2.11
CD44-236ENST00000533222 KRTAP5-7Q6L8G8 165 aa1.85□□□□□ -2.11
CD44-236ENST00000533222 LPAP08519 4548 aa1.83□□□□□ -2.12
CD44-236ENST00000533222 SPRR2GQ9BYE4 73 aa1.82□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms