RNA–Protein interactions for RNA: ENST00000532245.5

CTNND1-230, Transcript of catenin delta 1, humanhuman

TSL 1 (best) BASIC

Gene CTNND1, Length 5,655 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNND1-230ENST00000532245 DYNC1H1Q14204 4646 aaKnown RBP3.71□□□□□ -1.82
CTNND1-230ENST00000532245 KRTAP12-2P59991 146 aa3.7□□□□□ -1.82
CTNND1-230ENST00000532245 LRP1BQ9NZR2 4599 aa3.69□□□□□ -1.82
CTNND1-230ENST00000532245 RYR1P21817 5038 aa3.67□□□□□ -1.82
CTNND1-230ENST00000532245 DNAH10Q8IVF4 4471 aa3.66□□□□□ -1.82
CTNND1-230ENST00000532245 FAT1Q14517 4588 aa3.66□□□□□ -1.82
CTNND1-230ENST00000532245 DNAH17Q9UFH2 4485 aa3.65□□□□□ -1.83
CTNND1-230ENST00000532245 KRTAP12-1P59990 96 aa3.63□□□□□ -1.83
CTNND1-230ENST00000532245 FAT2Q9NYQ8 4349 aa3.62□□□□□ -1.83
CTNND1-230ENST00000532245 KMT2AQ03164 3969 aa3.62□□□□□ -1.83
CTNND1-230ENST00000532245 KRTAP10-6P60371 365 aaPredicted RBP3.6□□□□□ -1.83
CTNND1-230ENST00000532245 KRTAP13-4Q3LI77 160 aa3.6□□□□□ -1.83
CTNND1-230ENST00000532245 CMYA5Q8N3K9 4069 aa3.59□□□□□ -1.83
CTNND1-230ENST00000532245 DNAH2Q9P225 4427 aa3.59□□□□□ -1.83
CTNND1-230ENST00000532245 KRTAP3-3Q9BYR6 98 aa3.58□□□□□ -1.84
CTNND1-230ENST00000532245 KRTAP4-1Q9BYQ7 146 aa3.58□□□□□ -1.84
CTNND1-230ENST00000532245 DYNC2H1Q8NCM8 4307 aaKnown RBP3.57□□□□□ -1.84
CTNND1-230ENST00000532245 SACSQ9NZJ4 4579 aa3.56□□□□□ -1.84
CTNND1-230ENST00000532245 RYR3Q15413 4870 aa3.56□□□□□ -1.84
CTNND1-230ENST00000532245 DNAH3Q8TD57 4116 aa3.55□□□□□ -1.84
CTNND1-230ENST00000532245 KRTAP17-1Q9BYP8 105 aa3.55□□□□□ -1.84
CTNND1-230ENST00000532245 KIAA1109Q2LD37 5005 aa3.54□□□□□ -1.84
CTNND1-230ENST00000532245 LYSTQ99698 3801 aa3.54□□□□□ -1.84
CTNND1-230ENST00000532245 MT1HP80294 61 aa3.52□□□□□ -1.85
CTNND1-230ENST00000532245 VPS13BQ7Z7G8 4022 aa3.52□□□□□ -1.85
CTNND1-230ENST00000532245 KRTAP3-2Q9BYR7 98 aa3.51□□□□□ -1.85
CTNND1-230ENST00000532245 DNAH8Q96JB1 4490 aa3.48□□□□□ -1.85
CTNND1-230ENST00000532245 RYR2Q92736 4967 aa3.48□□□□□ -1.85
CTNND1-230ENST00000532245 LORP23490 312 aaPredicted RBP3.48□□□□□ -1.85
CTNND1-230ENST00000532245 KRTAP10-12P60413 245 aa3.47□□□□□ -1.85
CTNND1-230ENST00000532245 KRTAP15-1Q3LI76 137 aa3.46□□□□□ -1.85
CTNND1-230ENST00000532245 BIRC6Q9NR09 4857 aa3.45□□□□□ -1.86
CTNND1-230ENST00000532245 APOBP04114 4563 aaKnown RBP3.44□□□□□ -1.86
CTNND1-230ENST00000532245 DNAH6Q9C0G6 4158 aa3.43□□□□□ -1.86
CTNND1-230ENST00000532245 CRCT1Q9UGL9 99 aa3.41□□□□□ -1.86
CTNND1-230ENST00000532245 MT2AP02795 61 aa3.41□□□□□ -1.86
CTNND1-230ENST00000532245 HYDINQ4G0P3 5121 aa3.4□□□□□ -1.86
CTNND1-230ENST00000532245 HERC2O95714 4834 aa3.4□□□□□ -1.86
CTNND1-230ENST00000532245 DNAH7Q8WXX0 4024 aa3.4□□□□□ -1.86
CTNND1-230ENST00000532245 LRP1Q07954 4544 aaKnown RBP3.38□□□□□ -1.87
CTNND1-230ENST00000532245 KRTAP8-1Q8IUC2 63 aa3.37□□□□□ -1.87
CTNND1-230ENST00000532245 MYCBP2O75592 4640 aa3.36□□□□□ -1.87
CTNND1-230ENST00000532245 HSPG2P98160 4391 aa3.36□□□□□ -1.87
CTNND1-230ENST00000532245 MT1FP04733 61 aa3.35□□□□□ -1.87
CTNND1-230ENST00000532245 FAT3Q8TDW7 4589 aa3.33□□□□□ -1.88
CTNND1-230ENST00000532245 FRAS1Q86XX4 4008 aa3.32□□□□□ -1.88
CTNND1-230ENST00000532245 KMT2CQ8NEZ4 4911 aaKnown RBP3.31□□□□□ -1.88
CTNND1-230ENST00000532245 LCE3AQ5TA76 89 aa3.31□□□□□ -1.88
CTNND1-230ENST00000532245 KRTAP12-3P60328 96 aa3.31□□□□□ -1.88
CTNND1-230ENST00000532245 HECTD4Q9Y4D8 3996 aa3.31□□□□□ -1.88
CTNND1-230ENST00000532245 PKHD1P08F94 4074 aa3.3□□□□□ -1.88
CTNND1-230ENST00000532245 SPRR2GQ9BYE4 73 aa3.25□□□□□ -1.89
CTNND1-230ENST00000532245 PCLOQ9Y6V0 5065 aa3.24□□□□□ -1.89
CTNND1-230ENST00000532245 EPPK1P58107 5090 aaKnown RBP3.23□□□□□ -1.89
CTNND1-230ENST00000532245 SPRR2FQ96RM1 72 aa3.22□□□□□ -1.89
CTNND1-230ENST00000532245 HERC1Q15751 4861 aa3.2□□□□□ -1.9
CTNND1-230ENST00000532245 PKD1P98161 4303 aa3.2□□□□□ -1.9
CTNND1-230ENST00000532245 LRP2P98164 4655 aa3.19□□□□□ -1.9
CTNND1-230ENST00000532245 PKHD1L1Q86WI1 4243 aa3.17□□□□□ -1.9
CTNND1-230ENST00000532245 LPAP08519 4548 aa3.17□□□□□ -1.9
CTNND1-230ENST00000532245 INE1O15225 51 aa3.16□□□□□ -1.9
CTNND1-230ENST00000532245 ABCA13Q86UQ4 5058 aa3.13□□□□□ -1.91
CTNND1-230ENST00000532245 LCE2CQ5TA81 110 aa3.13□□□□□ -1.91
CTNND1-230ENST00000532245 KRTAP23-1A1A580 65 aa3.12□□□□□ -1.91
CTNND1-230ENST00000532245 KRTAP9-8Q9BYQ0 159 aa3.11□□□□□ -1.91
CTNND1-230ENST00000532245 KRTAP19-1Q8IUB9 90 aa3.1□□□□□ -1.91
CTNND1-230ENST00000532245 KRTAP19-5Q3LI72 72 aa3.07□□□□□ -1.92
CTNND1-230ENST00000532245 TNXBP22105 4242 aa3.06□□□□□ -1.92
CTNND1-230ENST00000532245 KRTAP19-8Q3LI54 63 aa3.06□□□□□ -1.92
CTNND1-230ENST00000532245 SPRR2EP22531 72 aa3.06□□□□□ -1.92
CTNND1-230ENST00000532245 SPRR2BP35325 72 aa3.06□□□□□ -1.92
CTNND1-230ENST00000532245 SPRR2AP35326 72 aa3.06□□□□□ -1.92
CTNND1-230ENST00000532245 KRTAP10-7P60409 375 aaPredicted RBP3.04□□□□□ -1.92
CTNND1-230ENST00000532245 KRTAP9-3Q9BYQ3 159 aa3.04□□□□□ -1.92
CTNND1-230ENST00000532245 KRTAP10-5P60370 271 aa3.04□□□□□ -1.92
CTNND1-230ENST00000532245 MT1BP07438 61 aa3.02□□□□□ -1.93
CTNND1-230ENST00000532245 KRTAP9-2Q9BYQ4 174 aa3.02□□□□□ -1.93
CTNND1-230ENST00000532245 MT1XP80297 61 aa2.99□□□□□ -1.93
CTNND1-230ENST00000532245 KRTAP19-2Q3LHN2 52 aa2.99□□□□□ -1.93
CTNND1-230ENST00000532245 LCE2BO14633 110 aa2.95□□□□□ -1.94
CTNND1-230ENST00000532245 SPRR2DP22532 72 aa2.95□□□□□ -1.94
CTNND1-230ENST00000532245 KRTAP4-8A0A0G2JLE6 195 aa2.94□□□□□ -1.94
CTNND1-230ENST00000532245 KRTAP4-8Q9BYQ9 185 aa2.94□□□□□ -1.94
CTNND1-230ENST00000532245 UBR4Q5T4S7 5183 aa2.92□□□□□ -1.94
CTNND1-230ENST00000532245 FSIP2Q5CZC0 6907 aa2.91□□□□□ -1.94
CTNND1-230ENST00000532245 RNF213Q63HN8 5207 aa2.9□□□□□ -1.94
CTNND1-230ENST00000532245 FAT4Q6V0I7 4981 aa2.9□□□□□ -1.94
CTNND1-230ENST00000532245 LCE3CQ5T5A8 94 aa2.9□□□□□ -1.95
CTNND1-230ENST00000532245 LCE2AQ5TA79 106 aaPredicted RBP2.89□□□□□ -1.95
CTNND1-230ENST00000532245 KRTAP9-6A0A140TA67 174 aa2.87□□□□□ -1.95
CTNND1-230ENST00000532245 MUC17Q685J3 4493 aa2.87□□□□□ -1.95
CTNND1-230ENST00000532245 FLGP20930 4061 aaPredicted RBP2.86□□□□□ -1.95
CTNND1-230ENST00000532245 LCE2DQ5TA82 110 aaPredicted RBP2.86□□□□□ -1.95
CTNND1-230ENST00000532245 KRTAP19-4Q3LI73 84 aa2.85□□□□□ -1.95
CTNND1-230ENST00000532245 HMCN2Q8NDA2 5059 aa2.84□□□□□ -1.95
CTNND1-230ENST00000532245 MT1GP13640 62 aa2.81□□□□□ -1.96
CTNND1-230ENST00000532245 KRTAP19-6Q3LI70 58 aa2.81□□□□□ -1.96
CTNND1-230ENST00000532245 KRTAP12-4P60329 112 aa2.74□□□□□ -1.97
CTNND1-230ENST00000532245 KRTAP19-3Q7Z4W3 81 aa2.73□□□□□ -1.97
CTNND1-230ENST00000532245 LCE3BQ5TA77 95 aa2.73□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms