RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 HTN1P15515 57 aa0.76□□□□□ -2.29
CD44-233ENST00000531141 SPAG11BQ08648 103 aa0.76□□□□□ -2.29
CD44-233ENST00000531141 SPINK13Q1W4C9 94 aa0.76□□□□□ -2.29
CD44-233ENST00000531141 RPL39P5Q59GN2 51 aa0.76□□□□□ -2.29
CD44-233ENST00000531141 Q5BKY6 102 aa0.76□□□□□ -2.29
CD44-233ENST00000531141 Q5VV11 94 aa0.76□□□□□ -2.29
CD44-233ENST00000531141 SPAG11AQ6PDA7 123 aa0.76□□□□□ -2.29
CD44-233ENST00000531141 TMEM167AQ8TBQ9 72 aa0.76□□□□□ -2.29
CD44-233ENST00000531141 LINC00208Q96KT6 92 aa0.76□□□□□ -2.29
CD44-233ENST00000531141 C20orf78Q9BR46 151 aa0.76□□□□□ -2.29
CD44-233ENST00000531141 MANBALQ9NQG1 85 aa0.76□□□□□ -2.29
CD44-233ENST00000531141 CDC42SE2Q9NRR3 84 aa0.76□□□□□ -2.29
CD44-233ENST00000531141 HIGD1BQ9P298 99 aa0.76□□□□□ -2.29
CD44-233ENST00000531141 GNG13Q9P2W3 67 aa0.76□□□□□ -2.29
CD44-233ENST00000531141 PRO0255Q9UI72 69 aa0.76□□□□□ -2.29
CD44-233ENST00000531141 TRBV25-1A0A075B6N4 114 aa0.75□□□□□ -2.29
CD44-233ENST00000531141 IGKV2D-29A0A075B6S2 120 aaPredicted RBP0.75□□□□□ -2.29
CD44-233ENST00000531141 MYMXA0A1B0GTQ4 84 aa0.75□□□□□ -2.29
CD44-233ENST00000531141 CEBPZOSA8MTT3 80 aa0.75□□□□□ -2.29
CD44-233ENST00000531141 CHKB-CPT1BH3BT56 60 aa0.75□□□□□ -2.29
CD44-233ENST00000531141 H7BZZ5 65 aa0.75□□□□□ -2.29
CD44-233ENST00000531141 COX8AP10176 69 aa0.75□□□□□ -2.29
CD44-233ENST00000531141 SPRR2DP22532 72 aa0.75□□□□□ -2.29
CD44-233ENST00000531141 GCHFRP30047 84 aa0.75□□□□□ -2.29
CD44-233ENST00000531141 IFI27P40305 119 aaPredicted RBP0.75□□□□□ -2.29
CD44-233ENST00000531141 SERF2P84101 59 aa0.75□□□□□ -2.29
CD44-233ENST00000531141 COX17Q14061 63 aa0.75□□□□□ -2.29
CD44-233ENST00000531141 ATXN8Q156A1 80 aa0.75□□□□□ -2.29
CD44-233ENST00000531141 SPINK9Q5DT21 86 aa0.75□□□□□ -2.29
CD44-233ENST00000531141 NMSQ5H8A3 153 aa0.75□□□□□ -2.29
CD44-233ENST00000531141 Q6JHZ5 121 aa0.75□□□□□ -2.29
CD44-233ENST00000531141 BAGE3Q86Y29 109 aa0.75□□□□□ -2.29
CD44-233ENST00000531141 BAGE2Q86Y30 109 aa0.75□□□□□ -2.29
CD44-233ENST00000531141 FXYD6-FXYD2A0A087WZ82 144 aa0.74□□□□□ -2.29
CD44-233ENST00000531141 A0A0G2JND7 137 aa0.74□□□□□ -2.29
CD44-233ENST00000531141 F8VRH5 84 aa0.74□□□□□ -2.29
CD44-233ENST00000531141 UQCR11O14957 56 aa0.74□□□□□ -2.29
CD44-233ENST00000531141 MT2AP02795 61 aa0.74□□□□□ -2.29
CD44-233ENST00000531141 MGPP08493 103 aa0.74□□□□□ -2.29
CD44-233ENST00000531141 FXYD6P3P58550 94 aa0.74□□□□□ -2.29
CD44-233ENST00000531141 DEFB1P60022 68 aa0.74□□□□□ -2.29
CD44-233ENST00000531141 SNRPGP62308 76 aaKnown RBP0.74□□□□□ -2.29
CD44-233ENST00000531141 C10orf113Q5VZT2 155 aa0.74□□□□□ -2.29
CD44-233ENST00000531141 TMEM263Q8WUH6 116 aaKnown RBP0.74□□□□□ -2.29
CD44-233ENST00000531141 SMIM4Q8WVI0 70 aa0.74□□□□□ -2.29
CD44-233ENST00000531141 FXYD6Q9H0Q3 95 aa0.74□□□□□ -2.29
CD44-233ENST00000531141 A0A1B0GUT8 65 aa0.73□□□□□ -2.29
CD44-233ENST00000531141 D6R8Y8 96 aa0.73□□□□□ -2.29
CD44-233ENST00000531141 LEPROTL1O95214 131 aa0.73□□□□□ -2.29
CD44-233ENST00000531141 MT1FP04733 61 aa0.73□□□□□ -2.29
CD44-233ENST00000531141 PRCDQ00LT1 54 aa0.73□□□□□ -2.29
CD44-233ENST00000531141 PIGYQ3MUY2 71 aa0.73□□□□□ -2.29
CD44-233ENST00000531141 SFTA2Q6UW10 78 aa0.73□□□□□ -2.29
CD44-233ENST00000531141 MUSTN1Q8IVN3 82 aa0.73□□□□□ -2.29
CD44-233ENST00000531141 TOMM5Q8N4H5 51 aa0.73□□□□□ -2.29
CD44-233ENST00000531141 Q96NJ1 140 aa0.73□□□□□ -2.29
CD44-233ENST00000531141 SPRR2FQ96RM1 72 aa0.73□□□□□ -2.29
CD44-233ENST00000531141 PRR15LQ9BU68 103 aa0.73□□□□□ -2.29
CD44-233ENST00000531141 ABRACLQ9P1F3 81 aa0.73□□□□□ -2.29
CD44-233ENST00000531141 LINC01558Q9Y6Z2 57 aa0.73□□□□□ -2.29
CD44-233ENST00000531141 ARL2-SNX15V9GYD0 113 aa0.73□□□□□ -2.29
CD44-233ENST00000531141 TRGV1A0A0A0MS02 117 aa0.72□□□□□ -2.29
CD44-233ENST00000531141 LINC01549A6NIU2 74 aa0.72□□□□□ -2.29
CD44-233ENST00000531141 F8WEM9 126 aa0.72□□□□□ -2.29
CD44-233ENST00000531141 H3BVH4 76 aa0.72□□□□□ -2.29
CD44-233ENST00000531141 C3orf79P0CE67 100 aa0.72□□□□□ -2.29
CD44-233ENST00000531141 ACYP2P14621 99 aa0.72□□□□□ -2.29
CD44-233ENST00000531141 COX6A2Q02221 97 aa0.72□□□□□ -2.29
CD44-233ENST00000531141 LINC01590Q5TEZ4 76 aa0.72□□□□□ -2.29
CD44-233ENST00000531141 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa0.72□□□□□ -2.29
CD44-233ENST00000531141 SMIM11BQ8TCY0 68 aa0.72□□□□□ -2.29
CD44-233ENST00000531141 CMC2Q9NRP2 79 aa0.72□□□□□ -2.29
CD44-233ENST00000531141 UBE2D4Q9Y2X8 147 aa0.72□□□□□ -2.29
CD44-233ENST00000531141 TRAV1-2A0A0B4J238 106 aa0.71□□□□□ -2.3
CD44-233ENST00000531141 CTXND1A0A1B0GTU2 59 aa0.71□□□□□ -2.3
CD44-233ENST00000531141 A8MTW9 85 aa0.71□□□□□ -2.3
CD44-233ENST00000531141 K7EIM0 57 aa0.71□□□□□ -2.3
CD44-233ENST00000531141 ARMS2P0C7Q2 107 aa0.71□□□□□ -2.3
CD44-233ENST00000531141 PLNP26678 52 aa0.71□□□□□ -2.3
CD44-233ENST00000531141 RPL37P61927 97 aaKnown RBP0.71□□□□□ -2.3
CD44-233ENST00000531141 UBL5Q9BZL1 73 aa0.71□□□□□ -2.3
CD44-233ENST00000531141 NMES1Q9C002 83 aa0.71□□□□□ -2.3
CD44-233ENST00000531141 H0Y9P7 68 aa0.7□□□□□ -2.3
CD44-233ENST00000531141 I3L2K1 104 aa0.7□□□□□ -2.3
CD44-233ENST00000531141 K7EMI3 77 aa0.7□□□□□ -2.3
CD44-233ENST00000531141 SPINK4O60575 86 aa0.7□□□□□ -2.3
CD44-233ENST00000531141 WT1-ASQ06250 92 aa0.7□□□□□ -2.3
CD44-233ENST00000531141 PLAC4Q8WY50 150 aa0.7□□□□□ -2.3
CD44-233ENST00000531141 SPRR4Q96PI1 79 aa0.7□□□□□ -2.3
CD44-233ENST00000531141 A0A096LNI7 61 aa0.69□□□□□ -2.3
CD44-233ENST00000531141 GVQW2A0A096LPI5 108 aaPredicted RBP0.69□□□□□ -2.3
CD44-233ENST00000531141 TRBV7-4A0A0J9YYF1 115 aa0.69□□□□□ -2.3
CD44-233ENST00000531141 TRBV6-1A0A0K0K1D8 114 aa0.69□□□□□ -2.3
CD44-233ENST00000531141 ENHOQ6UWT2 76 aa0.69□□□□□ -2.3
CD44-233ENST00000531141 Q6ZRX8 168 aa0.69□□□□□ -2.3
CD44-233ENST00000531141 DEFB107AQ8IZN7 70 aa0.69□□□□□ -2.3
CD44-233ENST00000531141 TTTY10Q9BZA0 68 aa0.69□□□□□ -2.3
CD44-233ENST00000531141 MT4P47944 62 aa0.68□□□□□ -2.3
CD44-233ENST00000531141 NREPQ16612 68 aa0.68□□□□□ -2.3
CD44-233ENST00000531141 PSENENQ9NZ42 101 aa0.68□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms