RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 DMXL2Q8TDJ6 3036 aa1.3□□□□□ -2.2
CD44-229ENST00000528672 USF3Q68DE3 2245 aa1.3□□□□□ -2.2
CD44-229ENST00000528672 DEFB119Q8N690 84 aa1.29□□□□□ -2.2
CD44-229ENST00000528672 RNF213Q63HN8 5207 aa1.29□□□□□ -2.2
CD44-229ENST00000528672 NBASA2RRP1 2371 aa1.28□□□□□ -2.2
CD44-229ENST00000528672 AHNAK2Q8IVF2 5795 aa1.28□□□□□ -2.2
CD44-229ENST00000528672 SPRR1AP35321 89 aa1.28□□□□□ -2.2
CD44-229ENST00000528672 KRTAP20-1Q3LI63 56 aa1.28□□□□□ -2.2
CD44-229ENST00000528672 DEFB105AQ8NG35 78 aa1.27□□□□□ -2.21
CD44-229ENST00000528672 APLNQ9ULZ1 77 aa1.27□□□□□ -2.21
CD44-229ENST00000528672 CUBNO60494 3623 aa1.27□□□□□ -2.21
CD44-229ENST00000528672 SVEP1Q4LDE5 3571 aa1.26□□□□□ -2.21
CD44-229ENST00000528672 CNTRLQ7Z7A1 2325 aa1.26□□□□□ -2.21
CD44-229ENST00000528672 WNK2Q9Y3S1 2297 aa1.26□□□□□ -2.21
CD44-229ENST00000528672 LAMA5O15230 3695 aa1.25□□□□□ -2.21
CD44-229ENST00000528672 H3BUA1 57 aa1.25□□□□□ -2.21
CD44-229ENST00000528672 KRTAP12-4P60329 112 aa1.25□□□□□ -2.21
CD44-229ENST00000528672 DEFB109BQ30KR1 87 aa1.25□□□□□ -2.21
CD44-229ENST00000528672 ATMQ13315 3056 aa1.24□□□□□ -2.21
CD44-229ENST00000528672 DCHS2Q6V1P9 2916 aa1.24□□□□□ -2.21
CD44-229ENST00000528672 PRLHP81277 87 aa1.24□□□□□ -2.21
CD44-229ENST00000528672 KLK9Q2XQG4 91 aa1.24□□□□□ -2.21
CD44-229ENST00000528672 ACANP16112 2415 aa1.24□□□□□ -2.21
CD44-229ENST00000528672 SPRR1BP22528 89 aa1.23□□□□□ -2.21
CD44-229ENST00000528672 Q5VSD8 79 aa1.23□□□□□ -2.21
CD44-229ENST00000528672 S4R3F8 94 aa1.23□□□□□ -2.21
CD44-229ENST00000528672 CHD9Q3L8U1 2897 aa1.22□□□□□ -2.21
CD44-229ENST00000528672 STATHP02808 62 aa1.22□□□□□ -2.21
CD44-229ENST00000528672 PRO0255Q9UI72 69 aa1.22□□□□□ -2.21
CD44-229ENST00000528672 HMCN2Q8NDA2 5059 aa1.22□□□□□ -2.21
CD44-229ENST00000528672 MAP1AP78559 2803 aaPredicted RBP1.21□□□□□ -2.22
CD44-229ENST00000528672 STAB2Q8WWQ8 2551 aa1.19□□□□□ -2.22
CD44-229ENST00000528672 CENPEQ02224 2701 aa1.19□□□□□ -2.22
CD44-229ENST00000528672 APC2O95996 2303 aa1.19□□□□□ -2.22
CD44-229ENST00000528672 MGAQ8IWI9 3026 aa1.19□□□□□ -2.22
CD44-229ENST00000528672 AHNAKQ09666 5890 aaKnown RBP1.19□□□□□ -2.22
CD44-229ENST00000528672 SPINK1P00995 79 aa1.18□□□□□ -2.22
CD44-229ENST00000528672 ROS1P08922 2347 aa1.18□□□□□ -2.22
CD44-229ENST00000528672 PKDREJQ9NTG1 2253 aa1.18□□□□□ -2.22
CD44-229ENST00000528672 SONP18583 2426 aaKnown RBP1.17□□□□□ -2.22
CD44-229ENST00000528672 DMBT1Q9UGM3 2413 aaPredicted RBP1.17□□□□□ -2.22
CD44-229ENST00000528672 MUC5BQ9HC84 5762 aaPredicted RBP1.17□□□□□ -2.22
CD44-229ENST00000528672 H0YGG7 62 aa1.17□□□□□ -2.22
CD44-229ENST00000528672 APELAP0DMC3 54 aa1.17□□□□□ -2.22
CD44-229ENST00000528672 DNAH11Q96DT5 4516 aa1.17□□□□□ -2.22
CD44-229ENST00000528672 SPTBN1Q01082 2364 aaKnown RBP1.16□□□□□ -2.22
CD44-229ENST00000528672 VPS13CQ709C8 3753 aa1.16□□□□□ -2.22
CD44-229ENST00000528672 COX14Q96I36 57 aa1.16□□□□□ -2.22
CD44-229ENST00000528672 VPS13DQ5THJ4 4388 aa1.16□□□□□ -2.22
CD44-229ENST00000528672 KMT2DO14686 5537 aa1.16□□□□□ -2.22
CD44-229ENST00000528672 DEFB1P60022 68 aa1.15□□□□□ -2.23
CD44-229ENST00000528672 MYCBP2O75592 4640 aa1.15□□□□□ -2.23
CD44-229ENST00000528672 DSTQ03001 7570 aaKnown RBP1.14□□□□□ -2.23
CD44-229ENST00000528672 A0A0D9SG42 100 aa1.14□□□□□ -2.23
CD44-229ENST00000528672 NOP10Q9NPE3 64 aaKnown RBP1.14□□□□□ -2.23
CD44-229ENST00000528672 SRRM2Q9UQ35 2752 aaKnown RBP1.14□□□□□ -2.23
CD44-229ENST00000528672 HMCN1Q96RW7 5635 aa1.14□□□□□ -2.23
CD44-229ENST00000528672 LAMA1P25391 3075 aa1.13□□□□□ -2.23
CD44-229ENST00000528672 AKAP9Q99996 3911 aa1.12□□□□□ -2.23
CD44-229ENST00000528672 PRKDCP78527 4128 aaKnown RBP1.12□□□□□ -2.23
CD44-229ENST00000528672 COL7A1Q02388 2944 aa1.12□□□□□ -2.23
CD44-229ENST00000528672 KRTAP4-1Q9BYQ7 146 aa1.11□□□□□ -2.23
CD44-229ENST00000528672 ACACAQ13085 2346 aa1.1□□□□□ -2.23
CD44-229ENST00000528672 SACSQ9NZJ4 4579 aa1.1□□□□□ -2.23
CD44-229ENST00000528672 DNAH1Q9P2D7 4330 aa1.09□□□□□ -2.23
CD44-229ENST00000528672 RHPN1-AS1Q9BWJ2 59 aa1.09□□□□□ -2.23
CD44-229ENST00000528672 TACC2O95359 2948 aa1.08□□□□□ -2.24
CD44-229ENST00000528672 ANK2Q01484 3957 aa1.08□□□□□ -2.24
CD44-229ENST00000528672 AKAP6Q13023 2319 aa1.08□□□□□ -2.24
CD44-229ENST00000528672 SMR3AQ99954 134 aa1.08□□□□□ -2.24
CD44-229ENST00000528672 DNAH8Q96JB1 4490 aa1.07□□□□□ -2.24
CD44-229ENST00000528672 FAT3Q8TDW7 4589 aa1.07□□□□□ -2.24
CD44-229ENST00000528672 DYNC2H1Q8NCM8 4307 aaKnown RBP1.07□□□□□ -2.24
CD44-229ENST00000528672 H3BUX3 64 aa1.07□□□□□ -2.24
CD44-229ENST00000528672 KRTAP2-3P0C7H8 128 aa1.07□□□□□ -2.24
CD44-229ENST00000528672 KRTAP2-4Q9BYR9 128 aa1.07□□□□□ -2.24
CD44-229ENST00000528672 HTN1P15515 57 aa1.06□□□□□ -2.24
CD44-229ENST00000528672 FCGBPQ9Y6R7 5405 aaPredicted RBP1.06□□□□□ -2.24
CD44-229ENST00000528672 USH2AO75445 5202 aa1.06□□□□□ -2.24
CD44-229ENST00000528672 M0QZ58 72 aa1.05□□□□□ -2.24
CD44-229ENST00000528672 KRTAP5-10Q6L8G5 202 aa1.05□□□□□ -2.24
CD44-229ENST00000528672 DEFB108BQ8NET1 73 aa1.05□□□□□ -2.24
CD44-229ENST00000528672 KRTAP10-4P60372 401 aaPredicted RBP1.04□□□□□ -2.24
CD44-229ENST00000528672 DEFB110Q30KQ9 67 aa1.03□□□□□ -2.24
CD44-229ENST00000528672 DEFB124Q8NES8 71 aa1.03□□□□□ -2.24
CD44-229ENST00000528672 DEFB136Q30KP8 78 aa1.02□□□□□ -2.25
CD44-229ENST00000528672 LYSTQ99698 3801 aa1.01□□□□□ -2.25
CD44-229ENST00000528672 ZNF469Q96JG9 3925 aaPredicted RBP1.01□□□□□ -2.25
CD44-229ENST00000528672 CSMD3Q7Z407 3707 aa1.01□□□□□ -2.25
CD44-229ENST00000528672 MUC5ACP98088 5654 aa1□□□□□ -2.25
CD44-229ENST00000528672 KRTAP2-1Q9BYU5 128 aa1□□□□□ -2.25
CD44-229ENST00000528672 MUC12Q9UKN1 5478 aa1□□□□□ -2.25
CD44-229ENST00000528672 DNAH2Q9P225 4427 aa0.99□□□□□ -2.25
CD44-229ENST00000528672 TRRAPQ9Y4A5 3859 aa0.99□□□□□ -2.25
CD44-229ENST00000528672 A0A096LNI7 61 aa0.99□□□□□ -2.25
CD44-229ENST00000528672 SPINK6Q6UWN8 80 aa0.98□□□□□ -2.25
CD44-229ENST00000528672 VPS13BQ7Z7G8 4022 aa0.98□□□□□ -2.25
CD44-229ENST00000528672 DNAH10Q8IVF4 4471 aa0.97□□□□□ -2.25
CD44-229ENST00000528672 KMT2AQ03164 3969 aa0.97□□□□□ -2.25
CD44-229ENST00000528672 DNAH3Q8TD57 4116 aa0.96□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms