RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 SPRR1BP22528 89 aa2.46□□□□□ -2.02
CD44-226ENST00000527889 RPL37AP61513 92 aaKnown RBP2.46□□□□□ -2.02
CD44-226ENST00000527889 LRP1Q07954 4544 aaKnown RBP2.46□□□□□ -2.02
CD44-226ENST00000527889 A0A1W2PNM2 257 aa2.45□□□□□ -2.02
CD44-226ENST00000527889 MIR22HGQ0VDD5 57 aa2.45□□□□□ -2.02
CD44-226ENST00000527889 MOBPQ13875 183 aa2.45□□□□□ -2.02
CD44-226ENST00000527889 IGFL1Q6UW32 110 aa2.45□□□□□ -2.02
CD44-226ENST00000527889 LINC00846Q9NV44 126 aa2.45□□□□□ -2.02
CD44-226ENST00000527889 FAT3Q8TDW7 4589 aa2.45□□□□□ -2.02
CD44-226ENST00000527889 PDE6GP18545 87 aa2.44□□□□□ -2.02
CD44-226ENST00000527889 KRTAP10-6P60371 365 aaPredicted RBP2.44□□□□□ -2.02
CD44-226ENST00000527889 LINC00483Q53H64 154 aa2.44□□□□□ -2.02
CD44-226ENST00000527889 PRR15LQ9BU68 103 aa2.44□□□□□ -2.02
CD44-226ENST00000527889 IGKV3D-7A0A0C4DH55 119 aa2.43□□□□□ -2.02
CD44-226ENST00000527889 SNURFQ9Y675 71 aa2.43□□□□□ -2.02
CD44-226ENST00000527889 A0A087WSZ3 146 aa2.42□□□□□ -2.02
CD44-226ENST00000527889 LOC101927531A0A1B0GV80 90 aa2.42□□□□□ -2.02
CD44-226ENST00000527889 KRTAP1-4P0C5Y4 121 aa2.42□□□□□ -2.02
CD44-226ENST00000527889 KRTAP10-4P60372 401 aaPredicted RBP2.42□□□□□ -2.02
CD44-226ENST00000527889 KRTAP13-2Q52LG2 175 aa2.42□□□□□ -2.02
CD44-226ENST00000527889 TNXBP22105 4242 aa2.42□□□□□ -2.02
CD44-226ENST00000527889 A8MUU9 505 aa2.41□□□□□ -2.02
CD44-226ENST00000527889 SPINK6Q6UWN8 80 aa2.41□□□□□ -2.02
CD44-226ENST00000527889 C20orf166-AS1Q96NR2 134 aa2.41□□□□□ -2.02
CD44-226ENST00000527889 UBL5Q9BZL1 73 aa2.41□□□□□ -2.02
CD44-226ENST00000527889 A0A087WVE0 104 aa2.4□□□□□ -2.03
CD44-226ENST00000527889 NDUFB1O75438 58 aa2.4□□□□□ -2.03
CD44-226ENST00000527889 KRTAP10-7P60409 375 aaPredicted RBP2.4□□□□□ -2.03
CD44-226ENST00000527889 NREPQ16612 68 aa2.4□□□□□ -2.03
CD44-226ENST00000527889 Q5VSD8 79 aa2.4□□□□□ -2.03
CD44-226ENST00000527889 DSCR10P59022 87 aa2.39□□□□□ -2.03
CD44-226ENST00000527889 DEFB116Q30KQ4 102 aa2.39□□□□□ -2.03
CD44-226ENST00000527889 SPAG11AQ6PDA7 123 aa2.39□□□□□ -2.03
CD44-226ENST00000527889 DMAC1Q96GE9 116 aa2.39□□□□□ -2.03
CD44-226ENST00000527889 SSBP3-AS1Q7Z2R9 100 aa2.38□□□□□ -2.03
CD44-226ENST00000527889 Q8N9L7 120 aa2.38□□□□□ -2.03
CD44-226ENST00000527889 IGKV4-1P06312 121 aa2.37□□□□□ -2.03
CD44-226ENST00000527889 CSAG1Q6PB30 78 aa2.37□□□□□ -2.03
CD44-226ENST00000527889 Q96NJ1 140 aa2.37□□□□□ -2.03
CD44-226ENST00000527889 SSPOA2VEC9 5147 aa2.37□□□□□ -2.03
CD44-226ENST00000527889 A8MU10 97 aa2.36□□□□□ -2.03
CD44-226ENST00000527889 LINC00304Q8N9R0 145 aa2.36□□□□□ -2.03
CD44-226ENST00000527889 LINC00472Q9H8W2 130 aa2.36□□□□□ -2.03
CD44-226ENST00000527889 K7EQZ3 153 aa2.35□□□□□ -2.03
CD44-226ENST00000527889 KRTAP5-11Q6L8G4 156 aa2.35□□□□□ -2.03
CD44-226ENST00000527889 SPANXA2-OT1Q8N9U9 137 aa2.35□□□□□ -2.03
CD44-226ENST00000527889 LCE1FQ5T754 118 aa2.33□□□□□ -2.04
CD44-226ENST00000527889 WFDC13Q8IUB5 93 aa2.33□□□□□ -2.04
CD44-226ENST00000527889 LINC00208Q96KT6 92 aa2.33□□□□□ -2.04
CD44-226ENST00000527889 A0A1B0GU33 70 aa2.32□□□□□ -2.04
CD44-226ENST00000527889 H0Y9P7 68 aa2.32□□□□□ -2.04
CD44-226ENST00000527889 SPINK1P00995 79 aa2.32□□□□□ -2.04
CD44-226ENST00000527889 P0C880 135 aa2.32□□□□□ -2.04
CD44-226ENST00000527889 KRTAP10-8P60410 259 aa2.32□□□□□ -2.04
CD44-226ENST00000527889 MMP24-AS1A0A0U1RRL7 71 aa2.31□□□□□ -2.04
CD44-226ENST00000527889 UQCR11O14957 56 aa2.31□□□□□ -2.04
CD44-226ENST00000527889 MT1HL1P0DM35 61 aa2.31□□□□□ -2.04
CD44-226ENST00000527889 KRTAP25-1Q3LHN0 102 aa2.31□□□□□ -2.04
CD44-226ENST00000527889 LINC01558Q9Y6Z2 57 aa2.31□□□□□ -2.04
CD44-226ENST00000527889 RPS29P62273 56 aaKnown RBP2.3□□□□□ -2.04
CD44-226ENST00000527889 LCE1EQ5T753 118 aa2.29□□□□□ -2.04
CD44-226ENST00000527889 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.28□□□□□ -2.04
CD44-226ENST00000527889 SPINT4Q6UDR6 99 aa2.28□□□□□ -2.04
CD44-226ENST00000527889 NEBP20929 6669 aa2.28□□□□□ -2.04
CD44-226ENST00000527889 GPR98Q8WXG9 6306 aa2.28□□□□□ -2.04
CD44-226ENST00000527889 C9orf92A6NGG3 77 aa2.27□□□□□ -2.05
CD44-226ENST00000527889 KRTAP20-1Q3LI63 56 aa2.27□□□□□ -2.05
CD44-226ENST00000527889 MRPL34Q9BQ48 92 aaKnown RBP2.27□□□□□ -2.05
CD44-226ENST00000527889 LPAP08519 4548 aa2.27□□□□□ -2.05
CD44-226ENST00000527889 Q5W150 140 aa2.26□□□□□ -2.05
CD44-226ENST00000527889 SYNE2Q8WXH0 6885 aaKnown RBP2.25□□□□□ -2.05
CD44-226ENST00000527889 SPINK7P58062 85 aa2.23□□□□□ -2.05
CD44-226ENST00000527889 KRTAP10-5P60370 271 aa2.23□□□□□ -2.05
CD44-226ENST00000527889 ZCCHC13Q8WW36 166 aaKnown RBP2.23□□□□□ -2.05
CD44-226ENST00000527889 TP53AIP1Q9HCN2 124 aa2.23□□□□□ -2.05
CD44-226ENST00000527889 KRTAP10-12P60413 245 aa2.22□□□□□ -2.05
CD44-226ENST00000527889 KRTAP13-3Q3SY46 172 aa2.22□□□□□ -2.05
CD44-226ENST00000527889 SPATA8Q6RVD6 105 aa2.21□□□□□ -2.06
CD44-226ENST00000527889 COA5Q86WW8 74 aa2.21□□□□□ -2.06
CD44-226ENST00000527889 PCOTHQ58A44 107 aa2.2□□□□□ -2.06
CD44-226ENST00000527889 PRO2289Q9P1D8 64 aa2.2□□□□□ -2.06
CD44-226ENST00000527889 USH2AO75445 5202 aa2.2□□□□□ -2.06
CD44-226ENST00000527889 A0A1B0GU69 56 aa2.19□□□□□ -2.06
CD44-226ENST00000527889 FCGBPQ9Y6R7 5405 aaPredicted RBP2.19□□□□□ -2.06
CD44-226ENST00000527889 TPRXLQ17RH7 258 aa2.18□□□□□ -2.06
CD44-226ENST00000527889 R4GN34 69 aa2.18□□□□□ -2.06
CD44-226ENST00000527889 MUC17Q685J3 4493 aa2.17□□□□□ -2.06
CD44-226ENST00000527889 ACYP2P14621 99 aa2.17□□□□□ -2.06
CD44-226ENST00000527889 RPL37P61927 97 aaKnown RBP2.17□□□□□ -2.06
CD44-226ENST00000527889 HRES1P13985 223 aa2.15□□□□□ -2.07
CD44-226ENST00000527889 LCE3CQ5T5A8 94 aa2.15□□□□□ -2.07
CD44-226ENST00000527889 MACF1Q9UPN3 7388 aaKnown RBP2.14□□□□□ -2.07
CD44-226ENST00000527889 KMT2DO14686 5537 aa2.12□□□□□ -2.07
CD44-226ENST00000527889 KRTAP4-1Q9BYQ7 146 aa2.11□□□□□ -2.07
CD44-226ENST00000527889 FLGP20930 4061 aaPredicted RBP2.11□□□□□ -2.07
CD44-226ENST00000527889 MUC12Q9UKN1 5478 aa2.1□□□□□ -2.07
CD44-226ENST00000527889 KRTAP6-3Q3LI67 103 aa2.1□□□□□ -2.07
CD44-226ENST00000527889 KRTAP9-6A8MVA2 160 aa2.08□□□□□ -2.08
CD44-226ENST00000527889 COX6B2Q6YFQ2 88 aa2.08□□□□□ -2.08
CD44-226ENST00000527889 INE1O15225 51 aa2.06□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms