RNA–Protein interactions for RNA: ENST00000527467.5

CTNND1-216, Transcript of catenin delta 1, humanhuman

TSL 1 (best) BASIC

Gene CTNND1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNND1-216ENST00000527467 DNAH1Q9P2D7 4330 aa3.38□□□□□ -1.87
CTNND1-216ENST00000527467 TRRAPQ9Y4A5 3859 aa3.38□□□□□ -1.87
CTNND1-216ENST00000527467 DNHD1Q96M86 4753 aa3.36□□□□□ -1.87
CTNND1-216ENST00000527467 CRCT1Q9UGL9 99 aa3.36□□□□□ -1.87
CTNND1-216ENST00000527467 BIRC6Q9NR09 4857 aa3.35□□□□□ -1.87
CTNND1-216ENST00000527467 KRTAP10-4P60372 401 aaPredicted RBP3.34□□□□□ -1.87
CTNND1-216ENST00000527467 PRKDCP78527 4128 aaKnown RBP3.31□□□□□ -1.88
CTNND1-216ENST00000527467 KRTAP10-6P60371 365 aaPredicted RBP3.28□□□□□ -1.88
CTNND1-216ENST00000527467 MEGF8Q7Z7M0 2845 aa3.28□□□□□ -1.88
CTNND1-216ENST00000527467 KRTAP10-12P60413 245 aa3.28□□□□□ -1.88
CTNND1-216ENST00000527467 DNAH11Q96DT5 4516 aa3.27□□□□□ -1.89
CTNND1-216ENST00000527467 KRTAP3-1Q9BYR8 98 aa3.27□□□□□ -1.89
CTNND1-216ENST00000527467 VPS13DQ5THJ4 4388 aa3.25□□□□□ -1.89
CTNND1-216ENST00000527467 LYSTQ99698 3801 aa3.24□□□□□ -1.89
CTNND1-216ENST00000527467 DNAH17Q9UFH2 4485 aa3.24□□□□□ -1.89
CTNND1-216ENST00000527467 KRTAP10-5P60370 271 aa3.23□□□□□ -1.89
CTNND1-216ENST00000527467 KRTAP12-3P60328 96 aa3.23□□□□□ -1.89
CTNND1-216ENST00000527467 FRAS1Q86XX4 4008 aa3.21□□□□□ -1.9
CTNND1-216ENST00000527467 PLECQ15149 4684 aaKnown RBP3.2□□□□□ -1.9
CTNND1-216ENST00000527467 STARD9Q9P2P6 4700 aa3.19□□□□□ -1.9
CTNND1-216ENST00000527467 DNAH10Q8IVF4 4471 aa3.18□□□□□ -1.9
CTNND1-216ENST00000527467 DNAH2Q9P225 4427 aa3.18□□□□□ -1.9
CTNND1-216ENST00000527467 LOC100996750A0A140TA64 210 aa3.18□□□□□ -1.9
CTNND1-216ENST00000527467 KRTAP4-6Q9BYQ5 205 aa3.18□□□□□ -1.9
CTNND1-216ENST00000527467 FAT2Q9NYQ8 4349 aa3.17□□□□□ -1.9
CTNND1-216ENST00000527467 KRTAP9-6A0A140TA67 174 aa3.17□□□□□ -1.9
CTNND1-216ENST00000527467 RYR2Q92736 4967 aa3.16□□□□□ -1.9
CTNND1-216ENST00000527467 SACSQ9NZJ4 4579 aa3.15□□□□□ -1.9
CTNND1-216ENST00000527467 DNAH8Q96JB1 4490 aa3.15□□□□□ -1.9
CTNND1-216ENST00000527467 LRP1BQ9NZR2 4599 aa3.15□□□□□ -1.9
CTNND1-216ENST00000527467 PKHD1L1Q86WI1 4243 aa3.15□□□□□ -1.91
CTNND1-216ENST00000527467 HECTD4Q9Y4D8 3996 aa3.14□□□□□ -1.91
CTNND1-216ENST00000527467 DYNC1H1Q14204 4646 aaKnown RBP3.13□□□□□ -1.91
CTNND1-216ENST00000527467 COL7A1Q02388 2944 aa3.11□□□□□ -1.91
CTNND1-216ENST00000527467 KRTAP9-2Q9BYQ4 174 aa3.11□□□□□ -1.91
CTNND1-216ENST00000527467 CSMD3Q7Z407 3707 aa3.1□□□□□ -1.91
CTNND1-216ENST00000527467 LCE3AQ5TA76 89 aa3.1□□□□□ -1.91
CTNND1-216ENST00000527467 LCE2AQ5TA79 106 aaPredicted RBP3.09□□□□□ -1.92
CTNND1-216ENST00000527467 VPS13BQ7Z7G8 4022 aa3.08□□□□□ -1.92
CTNND1-216ENST00000527467 PKD1P98161 4303 aa3.08□□□□□ -1.92
CTNND1-216ENST00000527467 LORP23490 312 aaPredicted RBP3.07□□□□□ -1.92
CTNND1-216ENST00000527467 MT1HP80294 61 aa3.07□□□□□ -1.92
CTNND1-216ENST00000527467 HERC2O95714 4834 aa3.06□□□□□ -1.92
CTNND1-216ENST00000527467 RYR1P21817 5038 aa3.06□□□□□ -1.92
CTNND1-216ENST00000527467 LCE2BO14633 110 aa3.05□□□□□ -1.92
CTNND1-216ENST00000527467 PCLOQ9Y6V0 5065 aa3.04□□□□□ -1.92
CTNND1-216ENST00000527467 HYDINQ4G0P3 5121 aa3.04□□□□□ -1.92
CTNND1-216ENST00000527467 KMT2AQ03164 3969 aa3.04□□□□□ -1.92
CTNND1-216ENST00000527467 DNAH5Q8TE73 4624 aa3.03□□□□□ -1.93
CTNND1-216ENST00000527467 SRRM2Q9UQ35 2752 aaKnown RBP3.02□□□□□ -1.93
CTNND1-216ENST00000527467 PKHD1P08F94 4074 aa3.02□□□□□ -1.93
CTNND1-216ENST00000527467 HERC1Q15751 4861 aa3.01□□□□□ -1.93
CTNND1-216ENST00000527467 RYR3Q15413 4870 aa3□□□□□ -1.93
CTNND1-216ENST00000527467 KRTAP8-1Q8IUC2 63 aa2.99□□□□□ -1.93
CTNND1-216ENST00000527467 APOBP04114 4563 aaKnown RBP2.98□□□□□ -1.93
CTNND1-216ENST00000527467 KMT2CQ8NEZ4 4911 aaKnown RBP2.97□□□□□ -1.93
CTNND1-216ENST00000527467 KRTAP19-4Q3LI73 84 aa2.95□□□□□ -1.94
CTNND1-216ENST00000527467 HSPG2P98160 4391 aa2.93□□□□□ -1.94
CTNND1-216ENST00000527467 KRTAP10-7P60409 375 aaPredicted RBP2.93□□□□□ -1.94
CTNND1-216ENST00000527467 MYCBP2O75592 4640 aa2.91□□□□□ -1.94
CTNND1-216ENST00000527467 FAT1Q14517 4588 aa2.9□□□□□ -1.94
CTNND1-216ENST00000527467 MT2AP02795 61 aa2.9□□□□□ -1.95
CTNND1-216ENST00000527467 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.88□□□□□ -1.95
CTNND1-216ENST00000527467 LCE2CQ5TA81 110 aa2.88□□□□□ -1.95
CTNND1-216ENST00000527467 EPPK1P58107 5090 aaKnown RBP2.87□□□□□ -1.95
CTNND1-216ENST00000527467 KRTAP9-7A8MTY7 169 aa2.87□□□□□ -1.95
CTNND1-216ENST00000527467 FAT3Q8TDW7 4589 aa2.86□□□□□ -1.95
CTNND1-216ENST00000527467 SPRR2FQ96RM1 72 aa2.85□□□□□ -1.95
CTNND1-216ENST00000527467 SPRR2EP22531 72 aa2.85□□□□□ -1.95
CTNND1-216ENST00000527467 SPRR2BP35325 72 aa2.85□□□□□ -1.95
CTNND1-216ENST00000527467 SPRR2AP35326 72 aa2.85□□□□□ -1.95
CTNND1-216ENST00000527467 KRTAP4-1Q9BYQ7 146 aa2.85□□□□□ -1.95
CTNND1-216ENST00000527467 KIAA1109Q2LD37 5005 aa2.85□□□□□ -1.95
CTNND1-216ENST00000527467 TNXBP22105 4242 aa2.81□□□□□ -1.96
CTNND1-216ENST00000527467 KRTAP20-1Q3LI63 56 aa2.81□□□□□ -1.96
CTNND1-216ENST00000527467 KRTAP19-1Q8IUB9 90 aa2.8□□□□□ -1.96
CTNND1-216ENST00000527467 SPRR2DP22532 72 aa2.8□□□□□ -1.96
CTNND1-216ENST00000527467 MUC17Q685J3 4493 aa2.79□□□□□ -1.96
CTNND1-216ENST00000527467 MT1FP04733 61 aa2.78□□□□□ -1.96
CTNND1-216ENST00000527467 ABCA13Q86UQ4 5058 aa2.75□□□□□ -1.97
CTNND1-216ENST00000527467 LCE3CQ5T5A8 94 aa2.74□□□□□ -1.97
CTNND1-216ENST00000527467 SPRR2GQ9BYE4 73 aa2.73□□□□□ -1.97
CTNND1-216ENST00000527467 KRTAP6-3Q3LI67 103 aa2.73□□□□□ -1.97
CTNND1-216ENST00000527467 KRTAP12-4P60329 112 aa2.71□□□□□ -1.98
CTNND1-216ENST00000527467 KRTAP4-8Q9BYQ9 185 aa2.7□□□□□ -1.98
CTNND1-216ENST00000527467 KRTAP19-6Q3LI70 58 aa2.69□□□□□ -1.98
CTNND1-216ENST00000527467 KRTAP19-5Q3LI72 72 aa2.68□□□□□ -1.98
CTNND1-216ENST00000527467 KRTAP2-3P0C7H8 128 aa2.67□□□□□ -1.98
CTNND1-216ENST00000527467 KRTAP2-4Q9BYR9 128 aa2.67□□□□□ -1.98
CTNND1-216ENST00000527467 KRTAP9-9Q9BYP9 154 aa2.66□□□□□ -1.98
CTNND1-216ENST00000527467 KRTAP9-4Q9BYQ2 154 aa2.66□□□□□ -1.98
CTNND1-216ENST00000527467 KRTAP19-8Q3LI54 63 aa2.65□□□□□ -1.99
CTNND1-216ENST00000527467 KRTAP4-12Q9BQ66 201 aa2.64□□□□□ -1.99
CTNND1-216ENST00000527467 KRTAP9-8Q9BYQ0 159 aa2.64□□□□□ -1.99
CTNND1-216ENST00000527467 MT3P25713 68 aa2.63□□□□□ -1.99
CTNND1-216ENST00000527467 KRTAP9-3Q9BYQ3 159 aa2.63□□□□□ -1.99
CTNND1-216ENST00000527467 LCE3BQ5TA77 95 aa2.62□□□□□ -1.99
CTNND1-216ENST00000527467 HMCN2Q8NDA2 5059 aa2.58□□□□□ -2
CTNND1-216ENST00000527467 LRP1Q07954 4544 aaKnown RBP2.57□□□□□ -2
CTNND1-216ENST00000527467 LCE3DQ9BYE3 92 aa2.57□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms