RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 USMG5Q96IX5 58 aa1.37□□□□□ -2.19
CD44-223ENST00000526553 LINC00208Q96KT6 92 aa1.37□□□□□ -2.19
CD44-223ENST00000526553 OBSCN-AS1Q96MR7 158 aa1.37□□□□□ -2.19
CD44-223ENST00000526553 TP53AIP1Q9HCN2 124 aa1.37□□□□□ -2.19
CD44-223ENST00000526553 LINC00846Q9NV44 126 aa1.37□□□□□ -2.19
CD44-223ENST00000526553 FAT1Q14517 4588 aa1.37□□□□□ -2.19
CD44-223ENST00000526553 DEFB131BA0A096LNP1 70 aa1.36□□□□□ -2.19
CD44-223ENST00000526553 TRAV22A0A0B4J277 110 aa1.36□□□□□ -2.19
CD44-223ENST00000526553 TRBV10-1A0A0K0K1A3 114 aa1.36□□□□□ -2.19
CD44-223ENST00000526553 H3BUA1 57 aa1.36□□□□□ -2.19
CD44-223ENST00000526553 HTN3P15516 51 aa1.36□□□□□ -2.19
CD44-223ENST00000526553 COX7BP24311 80 aa1.36□□□□□ -2.19
CD44-223ENST00000526553 RPL39P5Q59GN2 51 aa1.36□□□□□ -2.19
CD44-223ENST00000526553 HMCN2Q8NDA2 5059 aa1.36□□□□□ -2.19
CD44-223ENST00000526553 RNF213Q63HN8 5207 aa1.35□□□□□ -2.19
CD44-223ENST00000526553 NDUFA4O00483 81 aa1.35□□□□□ -2.19
CD44-223ENST00000526553 UQCR11O14957 56 aa1.35□□□□□ -2.19
CD44-223ENST00000526553 COX7B2Q8TF08 81 aa1.35□□□□□ -2.19
CD44-223ENST00000526553 C22orf24Q9Y442 160 aa1.35□□□□□ -2.19
CD44-223ENST00000526553 PKHD1L1Q86WI1 4243 aa1.35□□□□□ -2.19
CD44-223ENST00000526553 TRBV7-4A0A0J9YYF1 115 aa1.34□□□□□ -2.19
CD44-223ENST00000526553 I3L2K1 104 aa1.34□□□□□ -2.19
CD44-223ENST00000526553 NCR3O14931 201 aa1.34□□□□□ -2.19
CD44-223ENST00000526553 SMR3BP02814 79 aaPredicted RBP1.34□□□□□ -2.19
CD44-223ENST00000526553 ACYP2P14621 99 aa1.34□□□□□ -2.19
CD44-223ENST00000526553 CRIP1P50238 77 aa1.34□□□□□ -2.19
CD44-223ENST00000526553 WT1-ASQ06250 92 aa1.34□□□□□ -2.19
CD44-223ENST00000526553 Q5VSD8 79 aa1.34□□□□□ -2.19
CD44-223ENST00000526553 DNAH8Q96JB1 4490 aa1.34□□□□□ -2.2
CD44-223ENST00000526553 FAT3Q8TDW7 4589 aa1.33□□□□□ -2.2
CD44-223ENST00000526553 A0A087WVE0 104 aa1.33□□□□□ -2.2
CD44-223ENST00000526553 H0Y9P7 68 aa1.33□□□□□ -2.2
CD44-223ENST00000526553 DEFB131AP59861 70 aa1.33□□□□□ -2.2
CD44-223ENST00000526553 MIR22HGQ0VDD5 57 aa1.33□□□□□ -2.2
CD44-223ENST00000526553 Q8IZM0 81 aa1.33□□□□□ -2.2
CD44-223ENST00000526553 SMIM11BQ8TCY0 68 aa1.33□□□□□ -2.2
CD44-223ENST00000526553 DMAC1Q96GE9 116 aa1.33□□□□□ -2.2
CD44-223ENST00000526553 CDC42SE2Q9NRR3 84 aa1.33□□□□□ -2.2
CD44-223ENST00000526553 TOMM7Q9P0U1 55 aa1.33□□□□□ -2.2
CD44-223ENST00000526553 LINC00474Q9P2X8 69 aa1.33□□□□□ -2.2
CD44-223ENST00000526553 LINC01558Q9Y6Z2 57 aa1.33□□□□□ -2.2
CD44-223ENST00000526553 NBDYA0A0U1RRE5 68 aa1.32□□□□□ -2.2
CD44-223ENST00000526553 M0QY20 66 aa1.32□□□□□ -2.2
CD44-223ENST00000526553 SPART-AS1P0CW21 52 aa1.32□□□□□ -2.2
CD44-223ENST00000526553 LINC00575Q6W349 94 aa1.32□□□□□ -2.2
CD44-223ENST00000526553 RPL39LQ96EH5 51 aaKnown RBP1.32□□□□□ -2.2
CD44-223ENST00000526553 RHPN1-AS1Q9BWJ2 59 aa1.32□□□□□ -2.2
CD44-223ENST00000526553 CDKN2A-AS1Q9UH64 79 aa1.32□□□□□ -2.2
CD44-223ENST00000526553 LRP1Q07954 4544 aaKnown RBP1.31□□□□□ -2.2
CD44-223ENST00000526553 A0A1B0GU69 56 aa1.31□□□□□ -2.2
CD44-223ENST00000526553 A6NN06 94 aa1.31□□□□□ -2.2
CD44-223ENST00000526553 PRB4P10163 310 aaPredicted RBP1.31□□□□□ -2.2
CD44-223ENST00000526553 CCL18P55774 89 aa1.31□□□□□ -2.2
CD44-223ENST00000526553 RPL39P62891 51 aaKnown RBP1.31□□□□□ -2.2
CD44-223ENST00000526553 KLK9Q2XQG4 91 aa1.31□□□□□ -2.2
CD44-223ENST00000526553 KCNQ1DNQ9H478 68 aa1.31□□□□□ -2.2
CD44-223ENST00000526553 TNXBP22105 4242 aa1.3□□□□□ -2.2
CD44-223ENST00000526553 DEFB130BP0DP73 79 aa1.3□□□□□ -2.2
CD44-223ENST00000526553 DEFB130AP0DP74 79 aa1.3□□□□□ -2.2
CD44-223ENST00000526553 DEFB104AQ8WTQ1 72 aa1.3□□□□□ -2.2
CD44-223ENST00000526553 LRP2P98164 4655 aa1.3□□□□□ -2.2
CD44-223ENST00000526553 Q5VV11 94 aa1.29□□□□□ -2.2
CD44-223ENST00000526553 Q6ZQY7 126 aa1.29□□□□□ -2.2
CD44-223ENST00000526553 IGKV2D-29A0A075B6S2 120 aaPredicted RBP1.28□□□□□ -2.2
CD44-223ENST00000526553 A0A087WTM6 91 aa1.28□□□□□ -2.2
CD44-223ENST00000526553 HTN1P15515 57 aa1.28□□□□□ -2.2
CD44-223ENST00000526553 DEFB1P60022 68 aa1.28□□□□□ -2.2
CD44-223ENST00000526553 RPL37AP61513 92 aaKnown RBP1.28□□□□□ -2.2
CD44-223ENST00000526553 FAT4Q6V0I7 4981 aa1.27□□□□□ -2.21
CD44-223ENST00000526553 IGLV5-48A0A075B6I7 105 aa1.27□□□□□ -2.21
CD44-223ENST00000526553 A0A096LPF7 62 aa1.27□□□□□ -2.21
CD44-223ENST00000526553 GVQW2A0A096LPI5 108 aaPredicted RBP1.27□□□□□ -2.21
CD44-223ENST00000526553 SPATA8Q6RVD6 105 aa1.27□□□□□ -2.21
CD44-223ENST00000526553 NOP10Q9NPE3 64 aaKnown RBP1.27□□□□□ -2.21
CD44-223ENST00000526553 TRGV1A0A0A0MS02 117 aa1.26□□□□□ -2.21
CD44-223ENST00000526553 LINC00959A0A1B0GUT2 108 aa1.26□□□□□ -2.21
CD44-223ENST00000526553 SPINK13Q1W4C9 94 aa1.26□□□□□ -2.21
CD44-223ENST00000526553 WFDC10BQ8IUB3 73 aa1.26□□□□□ -2.21
CD44-223ENST00000526553 SPRR4Q96PI1 79 aa1.26□□□□□ -2.21
CD44-223ENST00000526553 CRIPTQ9P021 101 aa1.26□□□□□ -2.21
CD44-223ENST00000526553 KRTAP10-4P60372 401 aaPredicted RBP1.25□□□□□ -2.21
CD44-223ENST00000526553 COX6B2Q6YFQ2 88 aa1.25□□□□□ -2.21
CD44-223ENST00000526553 C6orf48Q9UBA6 75 aa1.25□□□□□ -2.21
CD44-223ENST00000526553 PRO0255Q9UI72 69 aa1.25□□□□□ -2.21
CD44-223ENST00000526553 LPAP08519 4548 aa1.25□□□□□ -2.21
CD44-223ENST00000526553 COX6A2Q02221 97 aa1.24□□□□□ -2.21
CD44-223ENST00000526553 DEFB105AQ8NG35 78 aa1.24□□□□□ -2.21
CD44-223ENST00000526553 H3BNG1 76 aa1.23□□□□□ -2.21
CD44-223ENST00000526553 CSAG1Q6PB30 78 aa1.23□□□□□ -2.21
CD44-223ENST00000526553 MRPL34Q9BQ48 92 aaKnown RBP1.23□□□□□ -2.21
CD44-223ENST00000526553 MT1HL1P0DM35 61 aa1.22□□□□□ -2.21
CD44-223ENST00000526553 Q6ZRX8 168 aa1.22□□□□□ -2.21
CD44-223ENST00000526553 WFDC13Q8IUB5 93 aa1.22□□□□□ -2.21
CD44-223ENST00000526553 MUC2Q02817 5179 aa1.21□□□□□ -2.21
CD44-223ENST00000526553 A8MTW9 85 aa1.21□□□□□ -2.22
CD44-223ENST00000526553 LELP1Q5T871 98 aa1.21□□□□□ -2.22
CD44-223ENST00000526553 SSBP3-AS1Q7Z2R9 100 aa1.21□□□□□ -2.22
CD44-223ENST00000526553 FSIP2Q5CZC0 6907 aa1.21□□□□□ -2.22
CD44-223ENST00000526553 K7EQZ3 153 aa1.2□□□□□ -2.22
CD44-223ENST00000526553 SPINK7P58062 85 aa1.2□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms