RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 MT1HL1P0DM35 61 aa1.81□□□□□ -2.12
CD44-219ENST00000525685 PRLHP81277 87 aa1.81□□□□□ -2.12
CD44-219ENST00000525685 Q5VV11 94 aa1.81□□□□□ -2.12
CD44-219ENST00000525685 KRTAP13-1Q8IUC0 172 aa1.81□□□□□ -2.12
CD44-219ENST00000525685 SPTSSBQ8NFR3 76 aa1.81□□□□□ -2.12
CD44-219ENST00000525685 LIMD2Q9BT23 127 aa1.81□□□□□ -2.12
CD44-219ENST00000525685 TNXBP22105 4242 aa1.81□□□□□ -2.12
CD44-219ENST00000525685 COX6CP09669 75 aa1.8□□□□□ -2.12
CD44-219ENST00000525685 SPRR1AP35321 89 aa1.8□□□□□ -2.12
CD44-219ENST00000525685 RPL28P46779 137 aaKnown RBP1.8□□□□□ -2.12
CD44-219ENST00000525685 LINC00308Q8TCZ7 52 aa1.8□□□□□ -2.12
CD44-219ENST00000525685 KCNQ1DNQ9H478 68 aa1.8□□□□□ -2.12
CD44-219ENST00000525685 HMCN2Q8NDA2 5059 aa1.8□□□□□ -2.12
CD44-219ENST00000525685 HERC1Q15751 4861 aa1.79□□□□□ -2.12
CD44-219ENST00000525685 TRAV23DV6A0A075B6W5 121 aa1.79□□□□□ -2.12
CD44-219ENST00000525685 H3BQ85 93 aa1.79□□□□□ -2.12
CD44-219ENST00000525685 ROMO1P60602 79 aa1.79□□□□□ -2.12
CD44-219ENST00000525685 CASC2Q6XLA1 102 aa1.79□□□□□ -2.12
CD44-219ENST00000525685 TRBV7-4A0A0J9YYF1 115 aa1.78□□□□□ -2.12
CD44-219ENST00000525685 LOC101927531A0A1B0GV80 90 aa1.78□□□□□ -2.12
CD44-219ENST00000525685 ETDCA0A1B0GVM5 59 aa1.78□□□□□ -2.12
CD44-219ENST00000525685 CHKB-CPT1BH3BT56 60 aa1.78□□□□□ -2.12
CD44-219ENST00000525685 Q6ZRX8 168 aa1.78□□□□□ -2.12
CD44-219ENST00000525685 MUSTN1Q8IVN3 82 aa1.78□□□□□ -2.12
CD44-219ENST00000525685 SPRR4Q96PI1 79 aa1.78□□□□□ -2.12
CD44-219ENST00000525685 HIGD2AQ9BW72 106 aa1.78□□□□□ -2.12
CD44-219ENST00000525685 FLG2Q5D862 2391 aaPredicted RBP1.77□□□□□ -2.13
CD44-219ENST00000525685 A0A087WVE0 104 aa1.77□□□□□ -2.13
CD44-219ENST00000525685 Q9BRP9 147 aa1.77□□□□□ -2.13
CD44-219ENST00000525685 IGKV3D-7A0A0C4DH55 119 aa1.76□□□□□ -2.13
CD44-219ENST00000525685 A8MWP4 228 aa1.76□□□□□ -2.13
CD44-219ENST00000525685 COX7BP24311 80 aa1.76□□□□□ -2.13
CD44-219ENST00000525685 ELOF1P60002 83 aaKnown RBP1.76□□□□□ -2.13
CD44-219ENST00000525685 Q6ZQT0 140 aa1.76□□□□□ -2.13
CD44-219ENST00000525685 TMEM254Q8TBM7 123 aa1.76□□□□□ -2.13
CD44-219ENST00000525685 SNURFQ9Y675 71 aa1.76□□□□□ -2.13
CD44-219ENST00000525685 SRRM2Q9UQ35 2752 aaKnown RBP1.76□□□□□ -2.13
CD44-219ENST00000525685 A0A087WSZ3 146 aa1.75□□□□□ -2.13
CD44-219ENST00000525685 A6NED7 52 aa1.75□□□□□ -2.13
CD44-219ENST00000525685 DNAL4O96015 105 aa1.75□□□□□ -2.13
CD44-219ENST00000525685 KRTAP25-1Q3LHN0 102 aa1.75□□□□□ -2.13
CD44-219ENST00000525685 SMIM11BQ8TCY0 68 aa1.75□□□□□ -2.13
CD44-219ENST00000525685 BAALC-AS2P0C853 105 aa1.74□□□□□ -2.13
CD44-219ENST00000525685 SPRR1BP22528 89 aa1.74□□□□□ -2.13
CD44-219ENST00000525685 OBSCN-AS1Q96MR7 158 aa1.74□□□□□ -2.13
CD44-219ENST00000525685 C14orf132Q9NPU4 83 aa1.74□□□□□ -2.13
CD44-219ENST00000525685 IGLV5-48A0A075B6I7 105 aa1.73□□□□□ -2.13
CD44-219ENST00000525685 H7C2G1 150 aa1.73□□□□□ -2.13
CD44-219ENST00000525685 KRTAP12-3P60328 96 aa1.73□□□□□ -2.13
CD44-219ENST00000525685 KRTAP21-2Q3LI59 83 aa1.73□□□□□ -2.13
CD44-219ENST00000525685 LINC00575Q6W349 94 aa1.73□□□□□ -2.13
CD44-219ENST00000525685 LINC00846Q9NV44 126 aa1.73□□□□□ -2.13
CD44-219ENST00000525685 MIR22HGQ0VDD5 57 aa1.72□□□□□ -2.13
CD44-219ENST00000525685 DEFB105AQ8NG35 78 aa1.72□□□□□ -2.13
CD44-219ENST00000525685 PRR15LQ9BU68 103 aa1.72□□□□□ -2.13
CD44-219ENST00000525685 RPS29P62273 56 aaKnown RBP1.71□□□□□ -2.14
CD44-219ENST00000525685 NREPQ16612 68 aa1.71□□□□□ -2.14
CD44-219ENST00000525685 SPAG11AQ6PDA7 123 aa1.71□□□□□ -2.14
CD44-219ENST00000525685 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP1.71□□□□□ -2.14
CD44-219ENST00000525685 Q6ZQY7 126 aa1.71□□□□□ -2.14
CD44-219ENST00000525685 SSBP3-AS1Q7Z2R9 100 aa1.71□□□□□ -2.14
CD44-219ENST00000525685 ZCCHC13Q8WW36 166 aaKnown RBP1.71□□□□□ -2.14
CD44-219ENST00000525685 C20orf166-AS1Q96NR2 134 aa1.71□□□□□ -2.14
CD44-219ENST00000525685 UBL5Q9BZL1 73 aa1.71□□□□□ -2.14
CD44-219ENST00000525685 ORMDL1Q9P0S3 153 aa1.71□□□□□ -2.14
CD44-219ENST00000525685 DMBT1Q9UGM3 2413 aaPredicted RBP1.71□□□□□ -2.14
CD44-219ENST00000525685 MUC17Q685J3 4493 aa1.71□□□□□ -2.14
CD44-219ENST00000525685 LPAP08519 4548 aa1.7□□□□□ -2.14
CD44-219ENST00000525685 RNF213Q63HN8 5207 aa1.7□□□□□ -2.14
CD44-219ENST00000525685 A0A0G2JQZ4 141 aa1.7□□□□□ -2.14
CD44-219ENST00000525685 A0A1W2PNM2 257 aa1.7□□□□□ -2.14
CD44-219ENST00000525685 H0YGX0 51 aa1.7□□□□□ -2.14
CD44-219ENST00000525685 H3BPC8 53 aa1.7□□□□□ -2.14
CD44-219ENST00000525685 NDUFB1O75438 58 aa1.7□□□□□ -2.14
CD44-219ENST00000525685 SPINK1P00995 79 aa1.7□□□□□ -2.14
CD44-219ENST00000525685 LINC01558Q9Y6Z2 57 aa1.7□□□□□ -2.14
CD44-219ENST00000525685 LRP2P98164 4655 aa1.69□□□□□ -2.14
CD44-219ENST00000525685 JMJD7-PLA2G4BH0Y9G9 81 aa1.69□□□□□ -2.14
CD44-219ENST00000525685 CSAG1Q6PB30 78 aa1.69□□□□□ -2.14
CD44-219ENST00000525685 TPRXLQ17RH7 258 aa1.68□□□□□ -2.14
CD44-219ENST00000525685 DMAC1Q96GE9 116 aa1.67□□□□□ -2.14
CD44-219ENST00000525685 LINC00208Q96KT6 92 aa1.67□□□□□ -2.14
CD44-219ENST00000525685 A0A1B0GU33 70 aa1.65□□□□□ -2.15
CD44-219ENST00000525685 PDE6GP18545 87 aa1.65□□□□□ -2.15
CD44-219ENST00000525685 LOC110117498A0A087WWA1 95 aa1.64□□□□□ -2.15
CD44-219ENST00000525685 C9orf92A6NGG3 77 aa1.64□□□□□ -2.15
CD44-219ENST00000525685 H0Y9P7 68 aa1.64□□□□□ -2.15
CD44-219ENST00000525685 SPINK7P58062 85 aa1.64□□□□□ -2.15
CD44-219ENST00000525685 SPATA8Q6RVD6 105 aa1.64□□□□□ -2.15
CD44-219ENST00000525685 Q96NJ1 140 aa1.64□□□□□ -2.15
CD44-219ENST00000525685 UQCR11O14957 56 aa1.63□□□□□ -2.15
CD44-219ENST00000525685 KRTAP12-4P60329 112 aa1.63□□□□□ -2.15
CD44-219ENST00000525685 RPL37P61927 97 aaKnown RBP1.62□□□□□ -2.15
CD44-219ENST00000525685 KRTAP4-1Q9BYQ7 146 aa1.62□□□□□ -2.15
CD44-219ENST00000525685 KRTAP6-3Q3LI67 103 aa1.61□□□□□ -2.15
CD44-219ENST00000525685 PCOTHQ58A44 107 aa1.61□□□□□ -2.15
CD44-219ENST00000525685 LINC00472Q9H8W2 130 aa1.61□□□□□ -2.15
CD44-219ENST00000525685 FAT4Q6V0I7 4981 aa1.6□□□□□ -2.15
CD44-219ENST00000525685 MUC2Q02817 5179 aa1.6□□□□□ -2.15
CD44-219ENST00000525685 COA5Q86WW8 74 aa1.59□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 225 ms