RNA–Protein interactions for RNA: ENST00000517490.5

CPNE3-203, Transcript of copine 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPNE3, Length 4,865 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-203ENST00000517490 DNAH3Q8TD57 4116 aa3.29□□□□□ -1.88
CPNE3-203ENST00000517490 KRTAP15-1Q3LI76 137 aa3.28□□□□□ -1.88
CPNE3-203ENST00000517490 TNP1P09430 55 aa3.28□□□□□ -1.88
CPNE3-203ENST00000517490 KRTAP19-4Q3LI73 84 aa3.23□□□□□ -1.89
CPNE3-203ENST00000517490 LCE2CQ5TA81 110 aa3.22□□□□□ -1.89
CPNE3-203ENST00000517490 DYNC2H1Q8NCM8 4307 aaKnown RBP3.22□□□□□ -1.89
CPNE3-203ENST00000517490 KRTAP10-4P60372 401 aaPredicted RBP3.21□□□□□ -1.89
CPNE3-203ENST00000517490 DNAH2Q9P225 4427 aa3.21□□□□□ -1.9
CPNE3-203ENST00000517490 DNAH11Q96DT5 4516 aa3.21□□□□□ -1.9
CPNE3-203ENST00000517490 ANK2Q01484 3957 aa3.2□□□□□ -1.9
CPNE3-203ENST00000517490 CMYA5Q8N3K9 4069 aa3.2□□□□□ -1.9
CPNE3-203ENST00000517490 DNAH6Q9C0G6 4158 aa3.2□□□□□ -1.9
CPNE3-203ENST00000517490 STARD9Q9P2P6 4700 aa3.17□□□□□ -1.9
CPNE3-203ENST00000517490 INE1O15225 51 aa3.15□□□□□ -1.9
CPNE3-203ENST00000517490 LCE2BO14633 110 aa3.15□□□□□ -1.9
CPNE3-203ENST00000517490 LRP1BQ9NZR2 4599 aa3.15□□□□□ -1.91
CPNE3-203ENST00000517490 HECTD4Q9Y4D8 3996 aa3.14□□□□□ -1.91
CPNE3-203ENST00000517490 DNAH5Q8TE73 4624 aa3.13□□□□□ -1.91
CPNE3-203ENST00000517490 FRAS1Q86XX4 4008 aa3.12□□□□□ -1.91
CPNE3-203ENST00000517490 LYSTQ99698 3801 aa3.11□□□□□ -1.91
CPNE3-203ENST00000517490 SACSQ9NZJ4 4579 aa3.09□□□□□ -1.92
CPNE3-203ENST00000517490 MT1HL1P0DM35 61 aa3.08□□□□□ -1.92
CPNE3-203ENST00000517490 KMT2AQ03164 3969 aa3.08□□□□□ -1.92
CPNE3-203ENST00000517490 DNAH7Q8WXX0 4024 aa3.07□□□□□ -1.92
CPNE3-203ENST00000517490 KRTAP10-10P60014 251 aa3.05□□□□□ -1.92
CPNE3-203ENST00000517490 VPS13BQ7Z7G8 4022 aa3.05□□□□□ -1.92
CPNE3-203ENST00000517490 LCE2AQ5TA79 106 aaPredicted RBP3.04□□□□□ -1.92
CPNE3-203ENST00000517490 DYNC1H1Q14204 4646 aaKnown RBP3.03□□□□□ -1.92
CPNE3-203ENST00000517490 PRKDCP78527 4128 aaKnown RBP3.03□□□□□ -1.92
CPNE3-203ENST00000517490 LORP23490 312 aaPredicted RBP3.03□□□□□ -1.92
CPNE3-203ENST00000517490 FAT1Q14517 4588 aa3□□□□□ -1.93
CPNE3-203ENST00000517490 KRTAP17-1Q9BYP8 105 aa2.98□□□□□ -1.93
CPNE3-203ENST00000517490 FAT2Q9NYQ8 4349 aa2.97□□□□□ -1.93
CPNE3-203ENST00000517490 APOBP04114 4563 aaKnown RBP2.91□□□□□ -1.94
CPNE3-203ENST00000517490 FAT3Q8TDW7 4589 aa2.91□□□□□ -1.94
CPNE3-203ENST00000517490 PKD1P98161 4303 aa2.9□□□□□ -1.95
CPNE3-203ENST00000517490 MT3P25713 68 aa2.89□□□□□ -1.95
CPNE3-203ENST00000517490 DNHD1Q96M86 4753 aa2.88□□□□□ -1.95
CPNE3-203ENST00000517490 PKHD1L1Q86WI1 4243 aa2.87□□□□□ -1.95
CPNE3-203ENST00000517490 HYDINQ4G0P3 5121 aa2.85□□□□□ -1.95
CPNE3-203ENST00000517490 MYCBP2O75592 4640 aa2.84□□□□□ -1.96
CPNE3-203ENST00000517490 LRP1Q07954 4544 aaKnown RBP2.83□□□□□ -1.96
CPNE3-203ENST00000517490 KRTAP4-1Q9BYQ7 146 aa2.82□□□□□ -1.96
CPNE3-203ENST00000517490 KRTAP4-5Q9BYR2 181 aa2.81□□□□□ -1.96
CPNE3-203ENST00000517490 PKHD1P08F94 4074 aa2.8□□□□□ -1.96
CPNE3-203ENST00000517490 LCE3AQ5TA76 89 aa2.79□□□□□ -1.96
CPNE3-203ENST00000517490 BIRC6Q9NR09 4857 aa2.77□□□□□ -1.97
CPNE3-203ENST00000517490 RYR2Q92736 4967 aa2.75□□□□□ -1.97
CPNE3-203ENST00000517490 HSPG2P98160 4391 aa2.75□□□□□ -1.97
CPNE3-203ENST00000517490 RYR1P21817 5038 aa2.74□□□□□ -1.97
CPNE3-203ENST00000517490 KRTAP10-12P60413 245 aa2.74□□□□□ -1.97
CPNE3-203ENST00000517490 KRTAP12-3P60328 96 aa2.74□□□□□ -1.97
CPNE3-203ENST00000517490 TNXBP22105 4242 aa2.73□□□□□ -1.97
CPNE3-203ENST00000517490 SPRR5A0A1B0GTR4 108 aa2.73□□□□□ -1.97
CPNE3-203ENST00000517490 SPRR2GQ9BYE4 73 aa2.72□□□□□ -1.97
CPNE3-203ENST00000517490 LRP2P98164 4655 aa2.7□□□□□ -1.98
CPNE3-203ENST00000517490 KIAA1109Q2LD37 5005 aa2.68□□□□□ -1.98
CPNE3-203ENST00000517490 RYR3Q15413 4870 aa2.67□□□□□ -1.98
CPNE3-203ENST00000517490 HERC1Q15751 4861 aa2.67□□□□□ -1.98
CPNE3-203ENST00000517490 KMT2CQ8NEZ4 4911 aaKnown RBP2.66□□□□□ -1.98
CPNE3-203ENST00000517490 KRTAP8-1Q8IUC2 63 aa2.66□□□□□ -1.98
CPNE3-203ENST00000517490 HERC2O95714 4834 aa2.63□□□□□ -1.99
CPNE3-203ENST00000517490 CRCT1Q9UGL9 99 aa2.63□□□□□ -1.99
CPNE3-203ENST00000517490 MUC17Q685J3 4493 aa2.61□□□□□ -1.99
CPNE3-203ENST00000517490 KRTAP19-1Q8IUB9 90 aa2.61□□□□□ -1.99
CPNE3-203ENST00000517490 MT2AP02795 61 aa2.6□□□□□ -1.99
CPNE3-203ENST00000517490 KRTAP19-2Q3LHN2 52 aa2.6□□□□□ -1.99
CPNE3-203ENST00000517490 MT1HP80294 61 aa2.6□□□□□ -1.99
CPNE3-203ENST00000517490 LPAP08519 4548 aa2.58□□□□□ -2
CPNE3-203ENST00000517490 MT1FP04733 61 aa2.58□□□□□ -2
CPNE3-203ENST00000517490 KRTAP19-8Q3LI54 63 aa2.56□□□□□ -2
CPNE3-203ENST00000517490 KRTAP9-6A0A140TA67 174 aa2.52□□□□□ -2.01
CPNE3-203ENST00000517490 FLGP20930 4061 aaPredicted RBP2.52□□□□□ -2.01
CPNE3-203ENST00000517490 LCE3CQ5T5A8 94 aa2.51□□□□□ -2.01
CPNE3-203ENST00000517490 MT1XP80297 61 aa2.5□□□□□ -2.01
CPNE3-203ENST00000517490 KRTAP10-5P60370 271 aa2.5□□□□□ -2.01
CPNE3-203ENST00000517490 KRTAP19-5Q3LI72 72 aa2.48□□□□□ -2.01
CPNE3-203ENST00000517490 MT1BP07438 61 aa2.47□□□□□ -2.01
CPNE3-203ENST00000517490 KRTAP10-7P60409 375 aaPredicted RBP2.47□□□□□ -2.01
CPNE3-203ENST00000517490 KRTAP9-8Q9BYQ0 159 aa2.45□□□□□ -2.02
CPNE3-203ENST00000517490 PCLOQ9Y6V0 5065 aa2.43□□□□□ -2.02
CPNE3-203ENST00000517490 LOC100996750A0A140TA64 210 aa2.42□□□□□ -2.02
CPNE3-203ENST00000517490 KRTAP4-6Q9BYQ5 205 aa2.42□□□□□ -2.02
CPNE3-203ENST00000517490 ABCA13Q86UQ4 5058 aa2.4□□□□□ -2.03
CPNE3-203ENST00000517490 EPPK1P58107 5090 aaKnown RBP2.38□□□□□ -2.03
CPNE3-203ENST00000517490 KRTAP9-3Q9BYQ3 159 aa2.37□□□□□ -2.03
CPNE3-203ENST00000517490 LCE5AQ5TCM9 118 aa2.32□□□□□ -2.04
CPNE3-203ENST00000517490 KRTAP9-4Q9BYQ2 154 aa2.3□□□□□ -2.04
CPNE3-203ENST00000517490 HMCN2Q8NDA2 5059 aa2.28□□□□□ -2.04
CPNE3-203ENST00000517490 KRTAP9-2Q9BYQ4 174 aa2.28□□□□□ -2.04
CPNE3-203ENST00000517490 KRTAP4-8A0A0G2JLE6 195 aa2.28□□□□□ -2.04
CPNE3-203ENST00000517490 KRTAP4-8Q9BYQ9 185 aa2.28□□□□□ -2.04
CPNE3-203ENST00000517490 KRTAP19-6Q3LI70 58 aa2.25□□□□□ -2.05
CPNE3-203ENST00000517490 MUC2Q02817 5179 aa2.24□□□□□ -2.05
CPNE3-203ENST00000517490 KRTAP9-7A8MTY7 169 aa2.24□□□□□ -2.05
CPNE3-203ENST00000517490 LCE4AQ5TA78 99 aa2.24□□□□□ -2.05
CPNE3-203ENST00000517490 SPRR2FQ96RM1 72 aa2.23□□□□□ -2.05
CPNE3-203ENST00000517490 KRTAP2-3P0C7H8 128 aa2.23□□□□□ -2.05
CPNE3-203ENST00000517490 KRTAP2-4Q9BYR9 128 aa2.23□□□□□ -2.05
CPNE3-203ENST00000517490 KRTAP2-1Q9BYU5 128 aa2.23□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms