RNA–Protein interactions for RNA: ENST00000510884.5

NUP54-210, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 441 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-210ENST00000510884 ANK3Q12955 4377 aaKnown RBP2.67□□□□□ -1.98
NUP54-210ENST00000510884 KNL1Q8NG31 2342 aa2.67□□□□□ -1.98
NUP54-210ENST00000510884 DEFB110Q30KQ9 67 aa2.66□□□□□ -1.98
NUP54-210ENST00000510884 STAB2Q8WWQ8 2551 aa2.65□□□□□ -1.98
NUP54-210ENST00000510884 SORL1Q92673 2214 aa2.65□□□□□ -1.98
NUP54-210ENST00000510884 DEFB109BQ30KR1 87 aa2.65□□□□□ -1.99
NUP54-210ENST00000510884 DYNC2H1Q8NCM8 4307 aaKnown RBP2.64□□□□□ -1.99
NUP54-210ENST00000510884 H0YAA0 97 aa2.64□□□□□ -1.99
NUP54-210ENST00000510884 SACSQ9NZJ4 4579 aa2.64□□□□□ -1.99
NUP54-210ENST00000510884 SPINK13Q1W4C9 94 aa2.63□□□□□ -1.99
NUP54-210ENST00000510884 CNTRLQ7Z7A1 2325 aa2.63□□□□□ -1.99
NUP54-210ENST00000510884 A8MTW9 85 aa2.62□□□□□ -1.99
NUP54-210ENST00000510884 H3BUA1 57 aa2.62□□□□□ -1.99
NUP54-210ENST00000510884 KRTAP21-2Q3LI59 83 aa2.62□□□□□ -1.99
NUP54-210ENST00000510884 UBE2DNLQ8IWF7 75 aa2.62□□□□□ -1.99
NUP54-210ENST00000510884 APELAP0DMC3 54 aa2.61□□□□□ -1.99
NUP54-210ENST00000510884 H1FX-AS1Q4G0G2 97 aa2.61□□□□□ -1.99
NUP54-210ENST00000510884 Q6ZRN7 208 aaPredicted RBP2.61□□□□□ -1.99
NUP54-210ENST00000510884 CMYA5Q8N3K9 4069 aa2.59□□□□□ -1.99
NUP54-210ENST00000510884 RPL37P61927 97 aaKnown RBP2.59□□□□□ -1.99
NUP54-210ENST00000510884 CLPSL2Q6UWE3 100 aa2.59□□□□□ -1.99
NUP54-210ENST00000510884 PLCE1Q9P212 2302 aa2.59□□□□□ -2
NUP54-210ENST00000510884 IGFL1Q6UW32 110 aa2.58□□□□□ -2
NUP54-210ENST00000510884 Q6ZSA8 131 aa2.58□□□□□ -2
NUP54-210ENST00000510884 DEFB105AQ8NG35 78 aa2.58□□□□□ -2
NUP54-210ENST00000510884 AKAP6Q13023 2319 aa2.56□□□□□ -2
NUP54-210ENST00000510884 SPRR1AP35321 89 aa2.55□□□□□ -2
NUP54-210ENST00000510884 FRAS1Q86XX4 4008 aa2.55□□□□□ -2
NUP54-210ENST00000510884 DMBT1Q9UGM3 2413 aaPredicted RBP2.55□□□□□ -2
NUP54-210ENST00000510884 H3BUX3 64 aa2.54□□□□□ -2
NUP54-210ENST00000510884 RHPN1-AS1Q9BWJ2 59 aa2.54□□□□□ -2
NUP54-210ENST00000510884 CSMD3Q7Z407 3707 aa2.54□□□□□ -2
NUP54-210ENST00000510884 LYSTQ99698 3801 aa2.53□□□□□ -2
NUP54-210ENST00000510884 DEFB130BP0DP73 79 aa2.53□□□□□ -2
NUP54-210ENST00000510884 DEFB130AP0DP74 79 aa2.53□□□□□ -2
NUP54-210ENST00000510884 HRNRQ86YZ3 2850 aaPredicted RBP2.52□□□□□ -2.01
NUP54-210ENST00000510884 ROS1P08922 2347 aa2.52□□□□□ -2.01
NUP54-210ENST00000510884 LYNX1P0DP58 116 aa2.52□□□□□ -2.01
NUP54-210ENST00000510884 HECTD4Q9Y4D8 3996 aa2.51□□□□□ -2.01
NUP54-210ENST00000510884 RNF213Q63HN8 5207 aa2.51□□□□□ -2.01
NUP54-210ENST00000510884 SPRR1BP22528 89 aa2.51□□□□□ -2.01
NUP54-210ENST00000510884 UNQ6190/PRO20217Q6UXQ8 127 aa2.51□□□□□ -2.01
NUP54-210ENST00000510884 FSIP2Q5CZC0 6907 aa2.5□□□□□ -2.01
NUP54-210ENST00000510884 BRD3OSQ6XYD6 125 aa2.5□□□□□ -2.01
NUP54-210ENST00000510884 ALMS1Q8TCU4 4167 aa2.49□□□□□ -2.01
NUP54-210ENST00000510884 K7EIL1 84 aa2.49□□□□□ -2.01
NUP54-210ENST00000510884 DEFB108BQ8NET1 73 aa2.49□□□□□ -2.01
NUP54-210ENST00000510884 FAT4Q6V0I7 4981 aa2.48□□□□□ -2.01
NUP54-210ENST00000510884 SRRM2Q9UQ35 2752 aaKnown RBP2.48□□□□□ -2.01
NUP54-210ENST00000510884 KRTAP13-1Q8IUC0 172 aa2.46□□□□□ -2.02
NUP54-210ENST00000510884 HTN1P15515 57 aa2.45□□□□□ -2.02
NUP54-210ENST00000510884 PRLHP81277 87 aa2.45□□□□□ -2.02
NUP54-210ENST00000510884 NOP10Q9NPE3 64 aaKnown RBP2.45□□□□□ -2.02
NUP54-210ENST00000510884 HMCN2Q8NDA2 5059 aa2.45□□□□□ -2.02
NUP54-210ENST00000510884 DEFB1P60022 68 aa2.44□□□□□ -2.02
NUP54-210ENST00000510884 C10orf95Q9H7T3 257 aa2.44□□□□□ -2.02
NUP54-210ENST00000510884 CRCT1Q9UGL9 99 aa2.44□□□□□ -2.02
NUP54-210ENST00000510884 ABCA1O95477 2261 aa2.44□□□□□ -2.02
NUP54-210ENST00000510884 KRTAP12-4P60329 112 aa2.42□□□□□ -2.02
NUP54-210ENST00000510884 KMT2AQ03164 3969 aa2.41□□□□□ -2.02
NUP54-210ENST00000510884 PKHD1P08F94 4074 aa2.4□□□□□ -2.03
NUP54-210ENST00000510884 WNK2Q9Y3S1 2297 aa2.4□□□□□ -2.03
NUP54-210ENST00000510884 LELP1Q5T871 98 aa2.39□□□□□ -2.03
NUP54-210ENST00000510884 DNAH9Q9NYC9 4486 aa2.38□□□□□ -2.03
NUP54-210ENST00000510884 HSPG2P98160 4391 aa2.38□□□□□ -2.03
NUP54-210ENST00000510884 PRO0255Q9UI72 69 aa2.38□□□□□ -2.03
NUP54-210ENST00000510884 KRTAP13-2Q52LG2 175 aa2.37□□□□□ -2.03
NUP54-210ENST00000510884 S4R3F8 94 aa2.37□□□□□ -2.03
NUP54-210ENST00000510884 DNAH7Q8WXX0 4024 aa2.37□□□□□ -2.03
NUP54-210ENST00000510884 HUWE1Q7Z6Z7 4374 aaKnown RBP2.36□□□□□ -2.03
NUP54-210ENST00000510884 SPINK1P00995 79 aa2.36□□□□□ -2.03
NUP54-210ENST00000510884 APLNQ9ULZ1 77 aa2.36□□□□□ -2.03
NUP54-210ENST00000510884 MYCBP2O75592 4640 aa2.36□□□□□ -2.03
NUP54-210ENST00000510884 Q5VSD8 79 aa2.35□□□□□ -2.03
NUP54-210ENST00000510884 FAT2Q9NYQ8 4349 aa2.33□□□□□ -2.04
NUP54-210ENST00000510884 STARD9Q9P2P6 4700 aa2.33□□□□□ -2.04
NUP54-210ENST00000510884 DNAH3Q8TD57 4116 aa2.33□□□□□ -2.04
NUP54-210ENST00000510884 KRTAP12-3P60328 96 aa2.32□□□□□ -2.04
NUP54-210ENST00000510884 FLG2Q5D862 2391 aaPredicted RBP2.3□□□□□ -2.04
NUP54-210ENST00000510884 DNAH10Q8IVF4 4471 aa2.29□□□□□ -2.04
NUP54-210ENST00000510884 DEFB136Q30KP8 78 aa2.26□□□□□ -2.05
NUP54-210ENST00000510884 DNAH11Q96DT5 4516 aa2.26□□□□□ -2.05
NUP54-210ENST00000510884 PLECQ15149 4684 aaKnown RBP2.26□□□□□ -2.05
NUP54-210ENST00000510884 DYNC1H1Q14204 4646 aaKnown RBP2.24□□□□□ -2.05
NUP54-210ENST00000510884 H3BNG1 76 aa2.24□□□□□ -2.05
NUP54-210ENST00000510884 HMCN1Q96RW7 5635 aa2.24□□□□□ -2.05
NUP54-210ENST00000510884 LRP2P98164 4655 aa2.24□□□□□ -2.05
NUP54-210ENST00000510884 APOBP04114 4563 aaKnown RBP2.24□□□□□ -2.05
NUP54-210ENST00000510884 A0A0D9SG42 100 aa2.23□□□□□ -2.05
NUP54-210ENST00000510884 M0QZ58 72 aa2.23□□□□□ -2.05
NUP54-210ENST00000510884 SSPOA2VEC9 5147 aa2.23□□□□□ -2.05
NUP54-210ENST00000510884 KRTAP12-1P59990 96 aa2.21□□□□□ -2.06
NUP54-210ENST00000510884 NEBP20929 6669 aa2.2□□□□□ -2.06
NUP54-210ENST00000510884 DNAH2Q9P225 4427 aa2.2□□□□□ -2.06
NUP54-210ENST00000510884 KRTAP13-4Q3LI77 160 aa2.19□□□□□ -2.06
NUP54-210ENST00000510884 LINC01556Q5JQF7 62 aa2.19□□□□□ -2.06
NUP54-210ENST00000510884 VPS13DQ5THJ4 4388 aa2.18□□□□□ -2.06
NUP54-210ENST00000510884 SPINK6Q6UWN8 80 aa2.17□□□□□ -2.06
NUP54-210ENST00000510884 SYNE2Q8WXH0 6885 aaKnown RBP2.17□□□□□ -2.06
NUP54-210ENST00000510884 FAT1Q14517 4588 aa2.17□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms