RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 DNAH9Q9NYC9 4486 aa4.91□□□□□ -1.62
LIMCH1-208ENST00000508501 PLECQ15149 4684 aaKnown RBP4.81□□□□□ -1.64
LIMCH1-208ENST00000508501 CMYA5Q8N3K9 4069 aa4.81□□□□□ -1.64
LIMCH1-208ENST00000508501 STARD9Q9P2P6 4700 aa4.79□□□□□ -1.64
LIMCH1-208ENST00000508501 DNAH10Q8IVF4 4471 aa4.78□□□□□ -1.64
LIMCH1-208ENST00000508501 LCE3AQ5TA76 89 aa4.78□□□□□ -1.64
LIMCH1-208ENST00000508501 LYSTQ99698 3801 aa4.77□□□□□ -1.65
LIMCH1-208ENST00000508501 CRCT1Q9UGL9 99 aa4.73□□□□□ -1.65
LIMCH1-208ENST00000508501 KRTAP10-5P60370 271 aa4.72□□□□□ -1.65
LIMCH1-208ENST00000508501 DNAH1Q9P2D7 4330 aa4.72□□□□□ -1.65
LIMCH1-208ENST00000508501 KMT2AQ03164 3969 aa4.71□□□□□ -1.66
LIMCH1-208ENST00000508501 KRTAP19-4Q3LI73 84 aa4.7□□□□□ -1.66
LIMCH1-208ENST00000508501 KMT2CQ8NEZ4 4911 aaKnown RBP4.68□□□□□ -1.66
LIMCH1-208ENST00000508501 DNAH3Q8TD57 4116 aa4.65□□□□□ -1.67
LIMCH1-208ENST00000508501 DNAH7Q8WXX0 4024 aa4.63□□□□□ -1.67
LIMCH1-208ENST00000508501 DNAH11Q96DT5 4516 aa4.61□□□□□ -1.67
LIMCH1-208ENST00000508501 HYDINQ4G0P3 5121 aa4.6□□□□□ -1.67
LIMCH1-208ENST00000508501 MT1HL1P0DM35 61 aa4.59□□□□□ -1.67
LIMCH1-208ENST00000508501 VPS13DQ5THJ4 4388 aa4.57□□□□□ -1.68
LIMCH1-208ENST00000508501 KIAA1109Q2LD37 5005 aa4.57□□□□□ -1.68
LIMCH1-208ENST00000508501 DNAH5Q8TE73 4624 aa4.57□□□□□ -1.68
LIMCH1-208ENST00000508501 FAT1Q14517 4588 aa4.57□□□□□ -1.68
LIMCH1-208ENST00000508501 SACSQ9NZJ4 4579 aa4.55□□□□□ -1.68
LIMCH1-208ENST00000508501 FRAS1Q86XX4 4008 aa4.54□□□□□ -1.68
LIMCH1-208ENST00000508501 RYR3Q15413 4870 aa4.53□□□□□ -1.68
LIMCH1-208ENST00000508501 KRTAP4-5Q9BYR2 181 aa4.52□□□□□ -1.69
LIMCH1-208ENST00000508501 DNAH8Q96JB1 4490 aa4.51□□□□□ -1.69
LIMCH1-208ENST00000508501 PKHD1P08F94 4074 aa4.49□□□□□ -1.69
LIMCH1-208ENST00000508501 DNAH2Q9P225 4427 aa4.49□□□□□ -1.69
LIMCH1-208ENST00000508501 DYNC1H1Q14204 4646 aaKnown RBP4.49□□□□□ -1.69
LIMCH1-208ENST00000508501 LRP1BQ9NZR2 4599 aa4.48□□□□□ -1.69
LIMCH1-208ENST00000508501 RYR2Q92736 4967 aa4.48□□□□□ -1.69
LIMCH1-208ENST00000508501 DYNC2H1Q8NCM8 4307 aaKnown RBP4.46□□□□□ -1.69
LIMCH1-208ENST00000508501 DNAH6Q9C0G6 4158 aa4.46□□□□□ -1.7
LIMCH1-208ENST00000508501 KRTAP8-1Q8IUC2 63 aa4.45□□□□□ -1.7
LIMCH1-208ENST00000508501 RYR1P21817 5038 aa4.45□□□□□ -1.7
LIMCH1-208ENST00000508501 HECTD4Q9Y4D8 3996 aa4.44□□□□□ -1.7
LIMCH1-208ENST00000508501 ALMS1Q8TCU4 4167 aa4.44□□□□□ -1.7
LIMCH1-208ENST00000508501 EPPK1P58107 5090 aaKnown RBP4.43□□□□□ -1.7
LIMCH1-208ENST00000508501 DNAH17Q9UFH2 4485 aa4.43□□□□□ -1.7
LIMCH1-208ENST00000508501 LORP23490 312 aaPredicted RBP4.42□□□□□ -1.7
LIMCH1-208ENST00000508501 KRTAP10-4P60372 401 aaPredicted RBP4.39□□□□□ -1.71
LIMCH1-208ENST00000508501 APOBP04114 4563 aaKnown RBP4.37□□□□□ -1.71
LIMCH1-208ENST00000508501 VPS13BQ7Z7G8 4022 aa4.37□□□□□ -1.71
LIMCH1-208ENST00000508501 MYCBP2O75592 4640 aa4.35□□□□□ -1.71
LIMCH1-208ENST00000508501 LRP1Q07954 4544 aaKnown RBP4.33□□□□□ -1.72
LIMCH1-208ENST00000508501 KRTAP17-1Q9BYP8 105 aa4.33□□□□□ -1.72
LIMCH1-208ENST00000508501 FAT3Q8TDW7 4589 aa4.32□□□□□ -1.72
LIMCH1-208ENST00000508501 LCE3CQ5T5A8 94 aa4.32□□□□□ -1.72
LIMCH1-208ENST00000508501 HERC2O95714 4834 aa4.3□□□□□ -1.72
LIMCH1-208ENST00000508501 FAT2Q9NYQ8 4349 aa4.3□□□□□ -1.72
LIMCH1-208ENST00000508501 SPRR2GQ9BYE4 73 aa4.3□□□□□ -1.72
LIMCH1-208ENST00000508501 PKD1P98161 4303 aa4.25□□□□□ -1.73
LIMCH1-208ENST00000508501 KRTAP10-7P60409 375 aaPredicted RBP4.25□□□□□ -1.73
LIMCH1-208ENST00000508501 BIRC6Q9NR09 4857 aa4.24□□□□□ -1.73
LIMCH1-208ENST00000508501 HSPG2P98160 4391 aa4.22□□□□□ -1.73
LIMCH1-208ENST00000508501 ABCA13Q86UQ4 5058 aa4.19□□□□□ -1.74
LIMCH1-208ENST00000508501 KRTAP19-5Q3LI72 72 aa4.16□□□□□ -1.74
LIMCH1-208ENST00000508501 SPRR5A0A1B0GTR4 108 aa4.15□□□□□ -1.74
LIMCH1-208ENST00000508501 HERC1Q15751 4861 aa4.13□□□□□ -1.75
LIMCH1-208ENST00000508501 LRP2P98164 4655 aa4.12□□□□□ -1.75
LIMCH1-208ENST00000508501 KRTAP12-4P60329 112 aa4.11□□□□□ -1.75
LIMCH1-208ENST00000508501 PCLOQ9Y6V0 5065 aa4.08□□□□□ -1.76
LIMCH1-208ENST00000508501 MT2AP02795 61 aa4.06□□□□□ -1.76
LIMCH1-208ENST00000508501 LPAP08519 4548 aa4.02□□□□□ -1.77
LIMCH1-208ENST00000508501 MT1HP80294 61 aa4□□□□□ -1.77
LIMCH1-208ENST00000508501 RNF213Q63HN8 5207 aa4□□□□□ -1.77
LIMCH1-208ENST00000508501 UBR4Q5T4S7 5183 aa3.98□□□□□ -1.77
LIMCH1-208ENST00000508501 SPRR2FQ96RM1 72 aa3.96□□□□□ -1.78
LIMCH1-208ENST00000508501 MT3P25713 68 aa3.96□□□□□ -1.78
LIMCH1-208ENST00000508501 MUC2Q02817 5179 aa3.95□□□□□ -1.78
LIMCH1-208ENST00000508501 KRTAP19-8Q3LI54 63 aa3.95□□□□□ -1.78
LIMCH1-208ENST00000508501 LCE3EQ5T5B0 92 aa3.94□□□□□ -1.78
LIMCH1-208ENST00000508501 LCE3DQ9BYE3 92 aa3.94□□□□□ -1.78
LIMCH1-208ENST00000508501 PKHD1L1Q86WI1 4243 aa3.92□□□□□ -1.78
LIMCH1-208ENST00000508501 KRTAP4-1Q9BYQ7 146 aa3.9□□□□□ -1.78
LIMCH1-208ENST00000508501 MT1FP04733 61 aa3.9□□□□□ -1.79
LIMCH1-208ENST00000508501 LCE3BQ5TA77 95 aa3.87□□□□□ -1.79
LIMCH1-208ENST00000508501 TNXBP22105 4242 aa3.85□□□□□ -1.79
LIMCH1-208ENST00000508501 FSIP2Q5CZC0 6907 aa3.82□□□□□ -1.8
LIMCH1-208ENST00000508501 MT1GP13640 62 aa3.82□□□□□ -1.8
LIMCH1-208ENST00000508501 FAT4Q6V0I7 4981 aa3.8□□□□□ -1.8
LIMCH1-208ENST00000508501 HMCN2Q8NDA2 5059 aa3.78□□□□□ -1.8
LIMCH1-208ENST00000508501 KRTAP19-1Q8IUB9 90 aa3.76□□□□□ -1.81
LIMCH1-208ENST00000508501 MT1XP80297 61 aa3.72□□□□□ -1.81
LIMCH1-208ENST00000508501 MT1LQ93083 61 aa3.68□□□□□ -1.82
LIMCH1-208ENST00000508501 SPRR2EP22531 72 aa3.66□□□□□ -1.82
LIMCH1-208ENST00000508501 SPRR2BP35325 72 aa3.66□□□□□ -1.82
LIMCH1-208ENST00000508501 SPRR2AP35326 72 aa3.66□□□□□ -1.82
LIMCH1-208ENST00000508501 LCE2BO14633 110 aa3.64□□□□□ -1.83
LIMCH1-208ENST00000508501 MT1BP07438 61 aa3.61□□□□□ -1.83
LIMCH1-208ENST00000508501 PRM1P04553 51 aa3.58□□□□□ -1.84
LIMCH1-208ENST00000508501 SPRR2DP22532 72 aa3.57□□□□□ -1.84
LIMCH1-208ENST00000508501 KRTAP19-3Q7Z4W3 81 aa3.53□□□□□ -1.84
LIMCH1-208ENST00000508501 LCE2CQ5TA81 110 aa3.51□□□□□ -1.85
LIMCH1-208ENST00000508501 MT1EP04732 61 aa3.49□□□□□ -1.85
LIMCH1-208ENST00000508501 MUC17Q685J3 4493 aa3.47□□□□□ -1.85
LIMCH1-208ENST00000508501 KRTAP19-2Q3LHN2 52 aa3.45□□□□□ -1.86
LIMCH1-208ENST00000508501 KRTAP9-8Q9BYQ0 159 aa3.42□□□□□ -1.86
LIMCH1-208ENST00000508501 USH2AO75445 5202 aa3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms