RNA–Protein interactions for RNA: ENST00000507906.5

USP53-204, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 4

Gene USP53, Length 546 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-204ENST00000507906 CENPEQ02224 2701 aa0.74□□□□□ -2.29
USP53-204ENST00000507906 DNAH6Q9C0G6 4158 aa0.74□□□□□ -2.29
USP53-204ENST00000507906 DNAH17Q9UFH2 4485 aa0.74□□□□□ -2.29
USP53-204ENST00000507906 MUC3AQ02505 3323 aa0.74□□□□□ -2.29
USP53-204ENST00000507906 A0A096LNI7 61 aa0.74□□□□□ -2.29
USP53-204ENST00000507906 DEFB4AO15263 64 aa0.74□□□□□ -2.29
USP53-204ENST00000507906 DEFB124Q8NES8 71 aa0.74□□□□□ -2.29
USP53-204ENST00000507906 DYNC2H1Q8NCM8 4307 aaKnown RBP0.74□□□□□ -2.29
USP53-204ENST00000507906 SETD2Q9BYW2 2564 aaPredicted RBP0.74□□□□□ -2.29
USP53-204ENST00000507906 HUWE1Q7Z6Z7 4374 aaKnown RBP0.74□□□□□ -2.29
USP53-204ENST00000507906 CACNA1AO00555 2505 aa0.74□□□□□ -2.29
USP53-204ENST00000507906 NF1P21359 2839 aa0.74□□□□□ -2.29
USP53-204ENST00000507906 CMYA5Q8N3K9 4069 aa0.74□□□□□ -2.29
USP53-204ENST00000507906 ZNF469Q96JG9 3925 aaPredicted RBP0.73□□□□□ -2.29
USP53-204ENST00000507906 TRRAPQ9Y4A5 3859 aa0.73□□□□□ -2.29
USP53-204ENST00000507906 HTN3P15516 51 aa0.73□□□□□ -2.29
USP53-204ENST00000507906 DEFB135Q30KP9 77 aa0.73□□□□□ -2.29
USP53-204ENST00000507906 COX6B2Q6YFQ2 88 aa0.73□□□□□ -2.29
USP53-204ENST00000507906 HIVEP1P15822 2718 aa0.73□□□□□ -2.29
USP53-204ENST00000507906 DNAH11Q96DT5 4516 aa0.73□□□□□ -2.29
USP53-204ENST00000507906 DNAH10Q8IVF4 4471 aa0.73□□□□□ -2.29
USP53-204ENST00000507906 AHNAK2Q8IVF2 5795 aa0.73□□□□□ -2.29
USP53-204ENST00000507906 USP9YO00507 2555 aaPredicted RBP0.73□□□□□ -2.29
USP53-204ENST00000507906 DNAH9Q9NYC9 4486 aa0.73□□□□□ -2.29
USP53-204ENST00000507906 FAM208BQ5VWN6 2430 aa0.73□□□□□ -2.29
USP53-204ENST00000507906 CFAP46Q8IYW2 2715 aa0.73□□□□□ -2.29
USP53-204ENST00000507906 VPS13CQ709C8 3753 aa0.72□□□□□ -2.29
USP53-204ENST00000507906 ANK2Q01484 3957 aa0.72□□□□□ -2.29
USP53-204ENST00000507906 ACANP16112 2415 aa0.72□□□□□ -2.29
USP53-204ENST00000507906 SPINK1P00995 79 aa0.72□□□□□ -2.29
USP53-204ENST00000507906 SPART-AS1P0CW21 52 aa0.72□□□□□ -2.29
USP53-204ENST00000507906 TENM3Q9P273 2699 aa0.72□□□□□ -2.29
USP53-204ENST00000507906 VWFP04275 2813 aa0.72□□□□□ -2.29
USP53-204ENST00000507906 MXRA5Q9NR99 2828 aa0.72□□□□□ -2.29
USP53-204ENST00000507906 ZANQ9Y493 2812 aa0.72□□□□□ -2.29
USP53-204ENST00000507906 NBEAL2Q6ZNJ1 2754 aa0.72□□□□□ -2.29
USP53-204ENST00000507906 SRRM2Q9UQ35 2752 aaKnown RBP0.72□□□□□ -2.29
USP53-204ENST00000507906 CSMD2Q7Z408 3487 aa0.72□□□□□ -2.29
USP53-204ENST00000507906 DMBT1Q9UGM3 2413 aaPredicted RBP0.72□□□□□ -2.29
USP53-204ENST00000507906 SACSQ9NZJ4 4579 aa0.71□□□□□ -2.3
USP53-204ENST00000507906 PDZD2O15018 2839 aa0.71□□□□□ -2.3
USP53-204ENST00000507906 ABCA12Q86UK0 2595 aa0.71□□□□□ -2.3
USP53-204ENST00000507906 EPG5Q9HCE0 2579 aa0.71□□□□□ -2.3
USP53-204ENST00000507906 DNAH7Q8WXX0 4024 aa0.71□□□□□ -2.3
USP53-204ENST00000507906 DNAH3Q8TD57 4116 aa0.71□□□□□ -2.3
USP53-204ENST00000507906 SPINK6Q6UWN8 80 aa0.71□□□□□ -2.3
USP53-204ENST00000507906 S4R3F8 94 aa0.71□□□□□ -2.3
USP53-204ENST00000507906 HECTD1Q9ULT8 2610 aa0.71□□□□□ -2.3
USP53-204ENST00000507906 PKD1L1Q8TDX9 2849 aa0.71□□□□□ -2.3
USP53-204ENST00000507906 FASNP49327 2511 aaKnown RBP0.71□□□□□ -2.3
USP53-204ENST00000507906 CUBNO60494 3623 aa0.7□□□□□ -2.3
USP53-204ENST00000507906 ITPR3Q14573 2671 aa0.7□□□□□ -2.3
USP53-204ENST00000507906 NBEAL1Q6ZS30 2694 aa0.7□□□□□ -2.3
USP53-204ENST00000507906 NSD1Q96L73 2696 aaPredicted RBP0.7□□□□□ -2.3
USP53-204ENST00000507906 SVEP1Q4LDE5 3571 aa0.7□□□□□ -2.3
USP53-204ENST00000507906 TENM4Q6N022 2769 aa0.7□□□□□ -2.3
USP53-204ENST00000507906 STAB2Q8WWQ8 2551 aa0.7□□□□□ -2.3
USP53-204ENST00000507906 FLNAP21333 2647 aaKnown RBP0.69□□□□□ -2.3
USP53-204ENST00000507906 ITPR2Q14571 2701 aa0.69□□□□□ -2.3
USP53-204ENST00000507906 GPR98Q8WXG9 6306 aa0.69□□□□□ -2.3
USP53-204ENST00000507906 TGP01266 2768 aa0.69□□□□□ -2.3
USP53-204ENST00000507906 PKHD1L1Q86WI1 4243 aa0.69□□□□□ -2.3
USP53-204ENST00000507906 CSMD3Q7Z407 3707 aa0.69□□□□□ -2.3
USP53-204ENST00000507906 ZNF292O60281 2723 aa0.69□□□□□ -2.3
USP53-204ENST00000507906 POLQO75417 2590 aa0.68□□□□□ -2.3
USP53-204ENST00000507906 DEFB123Q8N688 67 aa0.68□□□□□ -2.3
USP53-204ENST00000507906 TEP1Q99973 2627 aaKnown RBP0.68□□□□□ -2.3
USP53-204ENST00000507906 COL7A1Q02388 2944 aa0.68□□□□□ -2.3
USP53-204ENST00000507906 USP24Q9UPU5 2620 aa0.68□□□□□ -2.3
USP53-204ENST00000507906 DNAH5Q8TE73 4624 aa0.67□□□□□ -2.3
USP53-204ENST00000507906 MGAM2Q2M2H8 2515 aa0.67□□□□□ -2.3
USP53-204ENST00000507906 HECTD4Q9Y4D8 3996 aa0.67□□□□□ -2.3
USP53-204ENST00000507906 ATRQ13535 2644 aa0.67□□□□□ -2.3
USP53-204ENST00000507906 KRTAP5-10Q6L8G5 202 aa0.67□□□□□ -2.3
USP53-204ENST00000507906 MYO18BQ8IUG5 2567 aa0.67□□□□□ -2.3
USP53-204ENST00000507906 BDP1A6H8Y1 2624 aa0.67□□□□□ -2.3
USP53-204ENST00000507906 APLNQ9ULZ1 77 aa0.66□□□□□ -2.3
USP53-204ENST00000507906 NIPBLQ6KC79 2804 aaeCLIP0.66□□□□□ -2.3
USP53-204ENST00000507906 PKD1P98161 4303 aa0.66□□□□□ -2.3
USP53-204ENST00000507906 MYCBP2O75592 4640 aa0.66□□□□□ -2.3
USP53-204ENST00000507906 HSPG2P98160 4391 aa0.66□□□□□ -2.3
USP53-204ENST00000507906 IGSF10Q6WRI0 2623 aa0.66□□□□□ -2.3
USP53-204ENST00000507906 TNXBP22105 4242 aa0.65□□□□□ -2.3
USP53-204ENST00000507906 LYSTQ99698 3801 aa0.65□□□□□ -2.3
USP53-204ENST00000507906 FAT2Q9NYQ8 4349 aa0.65□□□□□ -2.31
USP53-204ENST00000507906 FLNBO75369 2602 aaKnown RBP0.65□□□□□ -2.31
USP53-204ENST00000507906 KRTAP2-3P0C7H8 128 aa0.65□□□□□ -2.31
USP53-204ENST00000507906 KRTAP2-4Q9BYR9 128 aa0.65□□□□□ -2.31
USP53-204ENST00000507906 KRTAP2-1Q9BYU5 128 aa0.65□□□□□ -2.31
USP53-204ENST00000507906 STAB1Q9NY15 2570 aa0.65□□□□□ -2.31
USP53-204ENST00000507906 KMT2AQ03164 3969 aa0.65□□□□□ -2.31
USP53-204ENST00000507906 APOBP04114 4563 aaKnown RBP0.65□□□□□ -2.31
USP53-204ENST00000507906 VPS13BQ7Z7G8 4022 aa0.64□□□□□ -2.31
USP53-204ENST00000507906 LRP1Q07954 4544 aaKnown RBP0.64□□□□□ -2.31
USP53-204ENST00000507906 MAST4O15021 2626 aa0.64□□□□□ -2.31
USP53-204ENST00000507906 RPS29P62273 56 aaKnown RBP0.64□□□□□ -2.31
USP53-204ENST00000507906 SMR3AQ99954 134 aa0.64□□□□□ -2.31
USP53-204ENST00000507906 FLGP20930 4061 aaPredicted RBP0.64□□□□□ -2.31
USP53-204ENST00000507906 FAT3Q8TDW7 4589 aa0.64□□□□□ -2.31
USP53-204ENST00000507906 PLECQ15149 4684 aaKnown RBP0.64□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms