RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 LCE3DQ9BYE3 92 aa2.15□□□□□ -2.07
USF3-204ENST00000496826 FBN1P35555 2871 aaKnown RBP2.15□□□□□ -2.07
USF3-204ENST00000496826 LCE3EQ5T5B0 92 aa2.15□□□□□ -2.07
USF3-204ENST00000496826 MXRA5Q9NR99 2828 aa2.14□□□□□ -2.07
USF3-204ENST00000496826 MUC3AQ02505 3323 aa2.13□□□□□ -2.07
USF3-204ENST00000496826 NBPF19A0A087WUL8 3843 aa2.12□□□□□ -2.07
USF3-204ENST00000496826 DNHD1Q96M86 4753 aa2.11□□□□□ -2.07
USF3-204ENST00000496826 LAMA5O15230 3695 aa2.11□□□□□ -2.07
USF3-204ENST00000496826 CSMD1Q96PZ7 3565 aa2.11□□□□□ -2.07
USF3-204ENST00000496826 SMG1Q96Q15 3661 aaKnown RBP2.1□□□□□ -2.07
USF3-204ENST00000496826 LCE2CQ5TA81 110 aa2.1□□□□□ -2.07
USF3-204ENST00000496826 SPRR2GQ9BYE4 73 aa2.09□□□□□ -2.08
USF3-204ENST00000496826 SPENQ96T58 3664 aaKnown RBP2.08□□□□□ -2.08
USF3-204ENST00000496826 FBN2P35556 2912 aa2.07□□□□□ -2.08
USF3-204ENST00000496826 SVEP1Q4LDE5 3571 aa2.06□□□□□ -2.08
USF3-204ENST00000496826 VWFP04275 2813 aa2.05□□□□□ -2.08
USF3-204ENST00000496826 RYR3Q15413 4870 aa2.05□□□□□ -2.08
USF3-204ENST00000496826 LCE3BQ5TA77 95 aa2.05□□□□□ -2.08
USF3-204ENST00000496826 KRTAP19-5Q3LI72 72 aa2.05□□□□□ -2.08
USF3-204ENST00000496826 RELNP78509 3460 aa2.05□□□□□ -2.08
USF3-204ENST00000496826 EPPK1P58107 5090 aaKnown RBP2.04□□□□□ -2.08
USF3-204ENST00000496826 MT1GP13640 62 aa2.03□□□□□ -2.08
USF3-204ENST00000496826 HYDINQ4G0P3 5121 aa2.02□□□□□ -2.09
USF3-204ENST00000496826 LCE2DQ5TA82 110 aaPredicted RBP2.01□□□□□ -2.09
USF3-204ENST00000496826 VPS13CQ709C8 3753 aa1.99□□□□□ -2.09
USF3-204ENST00000496826 SPRR5A0A1B0GTR4 108 aa1.98□□□□□ -2.09
USF3-204ENST00000496826 CUBNO60494 3623 aa1.98□□□□□ -2.09
USF3-204ENST00000496826 BIRC6Q9NR09 4857 aa1.97□□□□□ -2.09
USF3-204ENST00000496826 TRRAPQ9Y4A5 3859 aa1.96□□□□□ -2.1
USF3-204ENST00000496826 AKAP9Q99996 3911 aa1.94□□□□□ -2.1
USF3-204ENST00000496826 BSNQ9UPA5 3926 aa1.94□□□□□ -2.1
USF3-204ENST00000496826 MT1FP04733 61 aa1.93□□□□□ -2.1
USF3-204ENST00000496826 CSMD2Q7Z408 3487 aa1.92□□□□□ -2.1
USF3-204ENST00000496826 MYCBP2O75592 4640 aa1.91□□□□□ -2.1
USF3-204ENST00000496826 HERC2O95714 4834 aa1.89□□□□□ -2.11
USF3-204ENST00000496826 ABCA13Q86UQ4 5058 aa1.89□□□□□ -2.11
USF3-204ENST00000496826 MT1HP80294 61 aa1.89□□□□□ -2.11
USF3-204ENST00000496826 KMT2CQ8NEZ4 4911 aaKnown RBP1.88□□□□□ -2.11
USF3-204ENST00000496826 MT1LQ93083 61 aa1.88□□□□□ -2.11
USF3-204ENST00000496826 MT2AP02795 61 aa1.87□□□□□ -2.11
USF3-204ENST00000496826 CSMD3Q7Z407 3707 aa1.87□□□□□ -2.11
USF3-204ENST00000496826 CMYA5Q8N3K9 4069 aa1.86□□□□□ -2.11
USF3-204ENST00000496826 DNAH2Q9P225 4427 aa1.85□□□□□ -2.11
USF3-204ENST00000496826 DNAH3Q8TD57 4116 aa1.85□□□□□ -2.11
USF3-204ENST00000496826 LCE1BQ5T7P3 118 aa1.84□□□□□ -2.11
USF3-204ENST00000496826 KRTAP19-8Q3LI54 63 aa1.83□□□□□ -2.12
USF3-204ENST00000496826 LCE1DQ5T752 114 aa1.83□□□□□ -2.12
USF3-204ENST00000496826 PRM1P04553 51 aa1.82□□□□□ -2.12
USF3-204ENST00000496826 HUWE1Q7Z6Z7 4374 aaKnown RBP1.82□□□□□ -2.12
USF3-204ENST00000496826 HMCN2Q8NDA2 5059 aa1.82□□□□□ -2.12
USF3-204ENST00000496826 LCE5AQ5TCM9 118 aa1.82□□□□□ -2.12
USF3-204ENST00000496826 HSPG2P98160 4391 aa1.81□□□□□ -2.12
USF3-204ENST00000496826 LCE1CQ5T751 118 aa1.8□□□□□ -2.12
USF3-204ENST00000496826 LCE1EQ5T753 118 aa1.8□□□□□ -2.12
USF3-204ENST00000496826 LCE1FQ5T754 118 aa1.8□□□□□ -2.12
USF3-204ENST00000496826 LCE1AQ5T7P2 110 aa1.8□□□□□ -2.12
USF3-204ENST00000496826 KRTAP19-3Q7Z4W3 81 aa1.8□□□□□ -2.12
USF3-204ENST00000496826 KIAA1109Q2LD37 5005 aa1.8□□□□□ -2.12
USF3-204ENST00000496826 MT1EP04732 61 aa1.77□□□□□ -2.13
USF3-204ENST00000496826 ZNF469Q96JG9 3925 aaPredicted RBP1.77□□□□□ -2.13
USF3-204ENST00000496826 LCE2AQ5TA79 106 aaPredicted RBP1.76□□□□□ -2.13
USF3-204ENST00000496826 RNF213Q63HN8 5207 aa1.76□□□□□ -2.13
USF3-204ENST00000496826 MT1XP80297 61 aa1.75□□□□□ -2.13
USF3-204ENST00000496826 LYSTQ99698 3801 aa1.75□□□□□ -2.13
USF3-204ENST00000496826 MT1BP07438 61 aa1.75□□□□□ -2.13
USF3-204ENST00000496826 DNAH11Q96DT5 4516 aa1.74□□□□□ -2.13
USF3-204ENST00000496826 DNAH6Q9C0G6 4158 aa1.74□□□□□ -2.13
USF3-204ENST00000496826 MT1MQ8N339 61 aa1.73□□□□□ -2.13
USF3-204ENST00000496826 ANK3Q12955 4377 aaKnown RBP1.73□□□□□ -2.13
USF3-204ENST00000496826 FRAS1Q86XX4 4008 aa1.73□□□□□ -2.13
USF3-204ENST00000496826 MT4P47944 62 aa1.73□□□□□ -2.13
USF3-204ENST00000496826 FAT2Q9NYQ8 4349 aa1.73□□□□□ -2.13
USF3-204ENST00000496826 KRTAP20-1Q3LI63 56 aa1.72□□□□□ -2.13
USF3-204ENST00000496826 DNAH7Q8WXX0 4024 aa1.72□□□□□ -2.13
USF3-204ENST00000496826 LCE4AQ5TA78 99 aa1.71□□□□□ -2.14
USF3-204ENST00000496826 DYNC1H1Q14204 4646 aaKnown RBP1.71□□□□□ -2.14
USF3-204ENST00000496826 DNAH5Q8TE73 4624 aa1.71□□□□□ -2.14
USF3-204ENST00000496826 FLGP20930 4061 aaPredicted RBP1.71□□□□□ -2.14
USF3-204ENST00000496826 PKHD1P08F94 4074 aa1.7□□□□□ -2.14
USF3-204ENST00000496826 KMT2AQ03164 3969 aa1.7□□□□□ -2.14
USF3-204ENST00000496826 DNAH8Q96JB1 4490 aa1.7□□□□□ -2.14
USF3-204ENST00000496826 DNAH17Q9UFH2 4485 aa1.7□□□□□ -2.14
USF3-204ENST00000496826 DNAH1Q9P2D7 4330 aa1.7□□□□□ -2.14
USF3-204ENST00000496826 FAT4Q6V0I7 4981 aa1.69□□□□□ -2.14
USF3-204ENST00000496826 MT1AP04731 61 aa1.69□□□□□ -2.14
USF3-204ENST00000496826 FAT3Q8TDW7 4589 aa1.68□□□□□ -2.14
USF3-204ENST00000496826 HECTD4Q9Y4D8 3996 aa1.67□□□□□ -2.14
USF3-204ENST00000496826 KRTAP9-9Q9BYP9 154 aa1.67□□□□□ -2.14
USF3-204ENST00000496826 PLECQ15149 4684 aaKnown RBP1.66□□□□□ -2.14
USF3-204ENST00000496826 LRP1Q07954 4544 aaKnown RBP1.66□□□□□ -2.14
USF3-204ENST00000496826 APOBP04114 4563 aaKnown RBP1.66□□□□□ -2.14
USF3-204ENST00000496826 KRTAP4-5Q9BYR2 181 aa1.66□□□□□ -2.14
USF3-204ENST00000496826 KRTAP9-6A0A140TA67 174 aa1.65□□□□□ -2.14
USF3-204ENST00000496826 KRTAP9-7A8MTY7 169 aa1.65□□□□□ -2.14
USF3-204ENST00000496826 DNAH10Q8IVF4 4471 aa1.65□□□□□ -2.14
USF3-204ENST00000496826 STARD9Q9P2P6 4700 aa1.65□□□□□ -2.15
USF3-204ENST00000496826 KRTAP17-1Q9BYP8 105 aa1.64□□□□□ -2.15
USF3-204ENST00000496826 SACSQ9NZJ4 4579 aa1.64□□□□□ -2.15
USF3-204ENST00000496826 DNAH9Q9NYC9 4486 aa1.63□□□□□ -2.15
USF3-204ENST00000496826 KRTAP2-3P0C7H8 128 aa1.63□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms